Wall clock time and date at job start Mon Mar 30 2020 06:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35896 * 116.99987 * 2 1 4 4 C 1.38832 * 120.01612 * 270.30424 * 3 2 1 5 5 C 1.50696 * 119.94773 * 0.02562 * 4 3 2 6 6 C 1.38193 * 120.10466 * 180.29785 * 4 3 2 7 7 C 1.38139 * 120.13365 * 359.73047 * 6 4 3 8 8 C 1.38994 * 120.02977 * 359.97438 * 7 6 4 9 9 S 1.76193 * 120.05141 * 180.02562 * 8 7 6 10 10 C 1.81402 * 103.00198 * 359.97438 * 9 8 7 11 11 C 1.38559 * 120.01754 * 90.05281 * 3 2 1 12 12 C 1.50704 * 120.06313 * 359.97438 * 11 3 2 13 13 C 1.53003 * 109.46858 * 90.92785 * 12 11 3 14 14 C 1.50704 * 109.46847 * 175.95090 * 13 12 11 15 15 H 1.08000 * 119.99801 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99833 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00108 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99557 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47537 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47087 * 120.00247 * 18 16 14 21 21 H 1.48501 * 109.47148 * 240.00107 * 18 16 14 22 22 H 1.09000 * 109.47085 * 176.03192 * 1 2 3 23 23 H 1.09000 * 109.47323 * 296.03272 * 1 2 3 24 24 H 1.08997 * 109.47102 * 56.03297 * 1 2 3 25 25 H 1.08996 * 109.47388 * 270.29800 * 5 4 3 26 26 H 1.09001 * 109.46986 * 30.29799 * 5 4 3 27 27 H 1.09003 * 109.47278 * 150.29186 * 5 4 3 28 28 H 1.07991 * 119.93507 * 179.74444 * 6 4 3 29 29 H 1.07995 * 119.98462 * 179.97438 * 7 6 4 30 30 H 1.09006 * 109.46728 * 60.00128 * 10 9 8 31 31 H 1.09000 * 109.47440 * 179.97438 * 10 9 8 32 32 H 1.09000 * 109.47048 * 299.99849 * 10 9 8 33 33 H 1.08991 * 109.47053 * 330.92823 * 12 11 3 34 34 H 1.09006 * 109.46888 * 210.92448 * 12 11 3 35 35 H 1.08998 * 109.47355 * 55.95751 * 13 12 11 36 36 H 1.08998 * 109.47365 * 295.95059 * 13 12 11 37 37 H 0.97000 * 119.99688 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 2.3556 1.8325 -1.2021 5 6 2.0064 1.1639 -2.5067 6 6 2.9885 3.0610 -1.2043 7 6 3.3103 3.6774 -0.0107 8 6 2.9975 3.0628 1.1961 9 16 3.4071 3.8488 2.7189 10 6 4.2001 5.3896 2.1824 11 6 2.3616 1.8280 1.1997 12 6 2.0209 1.1579 2.5059 13 6 3.1998 0.2939 2.9586 14 6 2.8989 -0.2970 4.3119 15 1 1.9607 -0.0785 4.8001 16 6 3.8212 -1.1174 4.9263 17 7 4.9635 -1.3838 4.3316 18 14 3.4480 -1.8503 6.6035 19 1 2.1061 -1.4003 7.0529 20 1 3.4674 -3.3324 6.5114 21 1 4.4736 -1.4015 7.5792 22 1 -0.3633 -1.0252 -0.0711 23 1 -0.3634 0.4510 0.9234 24 1 -0.3633 0.5742 -0.8523 25 1 2.8355 0.5316 -2.8243 26 1 1.1136 0.5528 -2.3742 27 1 1.8174 1.9235 -3.2652 28 1 3.2317 3.5403 -2.1410 29 1 3.8053 4.6373 -0.0152 30 1 3.4971 5.9717 1.5864 31 1 4.5001 5.9674 3.0566 32 1 5.0792 5.1558 1.5819 33 1 1.1401 0.5299 2.3732 34 1 1.8157 1.9169 3.2609 35 1 4.0976 0.9087 3.0221 36 1 3.3592 -0.5090 2.2389 37 1 5.6124 -1.9607 4.7641 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260217582.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:41 Heat of formation + Delta-G solvation = -30.641509 kcal Electronic energy + Delta-G solvation = -18161.658318 eV Core-core repulsion = 15415.971610 eV Total energy + Delta-G solvation = -2745.686708 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.91186 -36.94792 -34.36087 -32.55664 -31.42456 -29.08528 -28.67460 -27.34400 -26.06884 -24.89183 -21.92475 -21.50886 -19.87153 -17.81136 -16.50974 -16.24892 -15.67858 -15.17235 -15.12882 -14.38395 -13.82874 -13.70373 -13.64923 -13.22178 -13.15063 -12.81036 -12.46884 -12.26801 -12.09612 -11.97184 -11.69968 -11.49538 -11.09233 -10.89098 -10.76555 -10.51129 -9.93947 -9.83673 -9.65557 -9.36091 -9.08164 -8.92051 -8.23274 -8.13850 -6.94898 -5.88499 -3.90299 1.36870 1.59529 1.84866 2.76726 3.37646 3.44539 3.48806 3.66547 4.21773 4.54842 4.98091 5.10139 5.15410 5.18572 5.21540 5.41291 5.47058 5.47210 5.54737 5.68553 5.71732 5.74536 5.80968 5.87848 6.04169 6.16806 6.25251 6.50370 6.68505 6.71309 6.87793 6.92120 7.15658 7.82094 7.88476 7.98241 8.13141 8.52389 9.16007 9.72097 11.22766 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016365 B = 0.006791 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.595368 B = 4122.158246 C = 5323.610379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.322 6.322 3 C 0.107 3.893 4 C -0.112 4.112 5 C -0.105 4.105 6 C -0.108 4.108 7 C -0.136 4.136 8 C -0.084 4.084 9 S -0.075 6.075 10 C -0.162 4.162 11 C -0.053 4.053 12 C -0.076 4.076 13 C 0.036 3.964 14 C -0.514 4.514 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 H 0.092 0.908 23 H 0.048 0.952 24 H 0.040 0.960 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.023 0.977 36 H 0.019 0.981 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.969 11.075 -11.528 17.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.239 6.239 3 C 0.062 3.938 4 C -0.115 4.115 5 C -0.161 4.161 6 C -0.128 4.128 7 C -0.160 4.160 8 C -0.197 4.197 9 S 0.168 5.832 10 C -0.331 4.331 11 C -0.059 4.059 12 C -0.113 4.113 13 C -0.001 4.001 14 C -0.553 4.553 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 H 0.110 0.890 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.037 0.963 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.857 10.554 -10.279 15.854 hybrid contribution 0.081 0.140 -0.420 0.450 sum -5.776 10.693 -10.699 16.192 Atomic orbital electron populations 1.22949 0.79753 1.02893 1.00346 1.86105 1.19161 1.24454 1.94142 1.18198 0.98314 0.86328 0.90970 1.20128 1.01332 0.95094 0.94909 1.20638 1.02088 1.00008 0.93384 1.20613 0.99982 0.94846 0.97345 1.21049 1.02942 1.00362 0.91670 1.21531 1.03510 0.98137 0.96547 1.86137 1.72627 1.17672 1.06715 1.23754 1.03693 0.99566 1.06067 1.20322 0.96815 0.91856 0.96914 1.20801 1.01770 0.98590 0.90175 1.19006 0.91617 0.93763 0.95729 1.21239 1.02531 1.28544 1.02956 0.92766 1.24988 0.95140 0.96577 0.97621 1.69993 1.07680 1.37448 1.38158 0.86582 0.78285 0.78878 0.84529 1.19784 1.21117 1.21069 0.88990 0.93367 0.94135 0.91114 0.91628 0.92050 0.85959 0.86118 0.90438 0.87794 0.90102 0.91979 0.91742 0.95906 0.96281 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.37 101.05 1.05 1.53 16 2 O -0.32 -5.94 8.84 -19.41 -0.17 -6.11 16 3 C 0.11 1.99 5.66 -39.24 -0.22 1.76 16 4 C -0.11 -1.73 5.90 -104.42 -0.62 -2.35 16 5 C -0.10 -1.27 9.78 36.00 0.35 -0.92 16 6 C -0.11 -1.53 9.69 -39.63 -0.38 -1.91 16 7 C -0.14 -2.05 9.36 -39.34 -0.37 -2.42 16 8 C -0.08 -1.53 6.11 -39.06 -0.24 -1.77 16 9 S -0.07 -1.29 20.79 -107.50 -2.24 -3.52 16 10 C -0.16 -1.89 9.15 101.05 0.92 -0.97 16 11 C -0.05 -1.07 5.17 -104.26 -0.54 -1.61 16 12 C -0.08 -1.71 4.61 -27.88 -0.13 -1.84 16 13 C 0.04 0.99 4.96 -27.88 -0.14 0.85 16 14 C -0.51 -15.10 9.11 -34.44 -0.31 -15.42 16 15 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -27.81 13.29 55.43 0.74 -27.08 16 18 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 19 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 22 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.05 0.68 7.19 -51.93 -0.37 0.30 16 24 H 0.04 0.47 7.32 -51.93 -0.38 0.09 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.78 6.34 -51.93 -0.33 0.45 16 27 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 28 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.12 1.48 5.87 -52.49 -0.31 1.18 16 30 H 0.08 0.78 7.75 -51.92 -0.40 0.37 16 31 H 0.10 1.04 8.14 -51.92 -0.42 0.62 16 32 H 0.08 0.90 7.75 -51.92 -0.40 0.49 16 33 H 0.06 1.36 6.26 -51.93 -0.33 1.04 16 34 H 0.06 1.44 6.84 -51.93 -0.36 1.08 16 35 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 317.31 15.07 4.78 4.78 Total: -1.00 -33.12 317.31 -8.00 -41.12 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -5.37 Total: -3.01 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: -0.72 Total: -23.44 kcal Atomic # 7 Polarization: -27.81 SS G_CDS: 0.74 Total: -27.08 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.17 Total: -6.11 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: -1.29 SS G_CDS: -2.24 Total: -3.52 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.12 -8.00 -41.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260217582.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.482 kcal (2) G-P(sol) polarization free energy of solvation -33.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds