Wall clock time and date at job start Mon Mar 30 2020 06:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35896 * 116.99987 * 2 1 4 4 C 1.38832 * 120.01612 * 270.30424 * 3 2 1 5 5 C 1.50696 * 119.94773 * 0.02562 * 4 3 2 6 6 C 1.38193 * 120.10466 * 180.29785 * 4 3 2 7 7 C 1.38139 * 120.13365 * 359.73047 * 6 4 3 8 8 C 1.38994 * 120.02977 * 359.97438 * 7 6 4 9 9 S 1.76193 * 120.05141 * 180.02562 * 8 7 6 10 10 C 1.81402 * 103.00198 * 359.97438 * 9 8 7 11 11 C 1.38559 * 120.01754 * 90.05281 * 3 2 1 12 12 C 1.50704 * 120.06313 * 359.97438 * 11 3 2 13 13 C 1.53003 * 109.46858 * 90.92785 * 12 11 3 14 14 C 1.50704 * 109.46847 * 175.95090 * 13 12 11 15 15 H 1.08000 * 119.99801 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99833 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00108 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99557 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47537 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47087 * 120.00247 * 18 16 14 21 21 H 1.48501 * 109.47148 * 240.00107 * 18 16 14 22 22 H 1.09000 * 109.47085 * 176.03192 * 1 2 3 23 23 H 1.09000 * 109.47323 * 296.03272 * 1 2 3 24 24 H 1.08997 * 109.47102 * 56.03297 * 1 2 3 25 25 H 1.08996 * 109.47388 * 270.29800 * 5 4 3 26 26 H 1.09001 * 109.46986 * 30.29799 * 5 4 3 27 27 H 1.09003 * 109.47278 * 150.29186 * 5 4 3 28 28 H 1.07991 * 119.93507 * 179.74444 * 6 4 3 29 29 H 1.07995 * 119.98462 * 179.97438 * 7 6 4 30 30 H 1.09006 * 109.46728 * 60.00128 * 10 9 8 31 31 H 1.09000 * 109.47440 * 179.97438 * 10 9 8 32 32 H 1.09000 * 109.47048 * 299.99849 * 10 9 8 33 33 H 1.08991 * 109.47053 * 330.92823 * 12 11 3 34 34 H 1.09006 * 109.46888 * 210.92448 * 12 11 3 35 35 H 1.08998 * 109.47355 * 55.95751 * 13 12 11 36 36 H 1.08998 * 109.47365 * 295.95059 * 13 12 11 37 37 H 0.97000 * 119.99688 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 2.3556 1.8325 -1.2021 5 6 2.0064 1.1639 -2.5067 6 6 2.9885 3.0610 -1.2043 7 6 3.3103 3.6774 -0.0107 8 6 2.9975 3.0628 1.1961 9 16 3.4071 3.8488 2.7189 10 6 4.2001 5.3896 2.1824 11 6 2.3616 1.8280 1.1997 12 6 2.0209 1.1579 2.5059 13 6 3.1998 0.2939 2.9586 14 6 2.8989 -0.2970 4.3119 15 1 1.9607 -0.0785 4.8001 16 6 3.8212 -1.1174 4.9263 17 7 4.9635 -1.3838 4.3316 18 14 3.4480 -1.8503 6.6035 19 1 2.1061 -1.4003 7.0529 20 1 3.4674 -3.3324 6.5114 21 1 4.4736 -1.4015 7.5792 22 1 -0.3633 -1.0252 -0.0711 23 1 -0.3634 0.4510 0.9234 24 1 -0.3633 0.5742 -0.8523 25 1 2.8355 0.5316 -2.8243 26 1 1.1136 0.5528 -2.3742 27 1 1.8174 1.9235 -3.2652 28 1 3.2317 3.5403 -2.1410 29 1 3.8053 4.6373 -0.0152 30 1 3.4971 5.9717 1.5864 31 1 4.5001 5.9674 3.0566 32 1 5.0792 5.1558 1.5819 33 1 1.1401 0.5299 2.3732 34 1 1.8157 1.9169 3.2609 35 1 4.0976 0.9087 3.0221 36 1 3.3592 -0.5090 2.2389 37 1 5.6124 -1.9607 4.7641 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260217582.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:41 Heat of formation + Delta-G solvation = -50.007368 kcal Electronic energy + Delta-G solvation = -18162.498085 eV Core-core repulsion = 15415.971610 eV Total energy + Delta-G solvation = -2746.526474 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.20017 -38.21723 -36.18461 -34.37729 -32.85308 -30.71284 -29.69579 -28.57551 -27.29350 -26.73534 -23.71528 -22.79363 -21.47977 -19.08950 -18.51211 -17.80847 -16.94795 -16.58224 -16.37803 -16.32464 -15.10548 -14.93540 -14.72649 -14.59438 -14.43069 -14.21679 -14.13292 -13.62334 -13.32113 -13.28678 -12.99181 -12.88606 -12.84403 -12.56264 -12.38938 -12.12119 -11.78551 -11.62880 -11.27432 -11.12580 -10.64903 -10.55587 -10.29461 -9.50892 -8.28004 -8.16991 -6.29630 0.13690 0.29829 0.64817 1.38142 1.39623 1.52965 1.62868 2.40052 2.46133 2.95886 3.14512 3.83741 3.94877 3.99288 4.30156 4.30874 4.36048 4.40294 4.43234 4.50571 4.62409 4.69337 4.70914 4.75866 4.81462 4.86559 4.90885 5.17059 5.21637 5.28025 5.32484 5.48498 5.55874 5.75651 5.77498 5.85310 6.23871 6.61463 6.85613 7.38457 8.94456 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016365 B = 0.006791 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.595368 B = 4122.158246 C = 5323.610379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.351 6.351 3 C 0.090 3.910 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.094 4.094 7 C -0.135 4.135 8 C -0.090 4.090 9 S -0.158 6.158 10 C -0.138 4.138 11 C -0.097 4.097 12 C -0.056 4.056 13 C 0.053 3.947 14 C -0.538 4.538 15 H 0.057 0.943 16 C 0.000 4.000 17 N -0.933 5.933 18 Si 0.967 3.033 19 H -0.262 1.262 20 H -0.276 1.276 21 H -0.276 1.276 22 H 0.109 0.891 23 H 0.037 0.963 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.094 0.906 28 H 0.167 0.833 29 H 0.154 0.846 30 H 0.101 0.899 31 H 0.122 0.878 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.059 0.941 35 H -0.007 1.007 36 H -0.021 1.021 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.308 12.641 -12.926 19.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.269 6.269 3 C 0.045 3.955 4 C -0.120 4.120 5 C -0.158 4.158 6 C -0.114 4.114 7 C -0.158 4.158 8 C -0.203 4.203 9 S 0.084 5.916 10 C -0.306 4.306 11 C -0.102 4.102 12 C -0.094 4.094 13 C 0.016 3.984 14 C -0.576 4.576 15 H 0.075 0.925 16 C -0.197 4.197 17 N -0.573 5.573 18 Si 0.791 3.209 19 H -0.186 1.186 20 H -0.202 1.202 21 H -0.201 1.201 22 H 0.127 0.873 23 H 0.056 0.944 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.113 0.887 28 H 0.185 0.815 29 H 0.172 0.828 30 H 0.119 0.881 31 H 0.140 0.860 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.012 0.988 36 H -0.003 1.003 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.215 12.126 -11.686 17.951 hybrid contribution 0.215 -0.284 -0.082 0.365 sum -6.000 11.843 -11.768 17.741 Atomic orbital electron populations 1.23157 0.77758 1.04470 1.00934 1.86038 1.21354 1.25132 1.94337 1.18512 0.98850 0.86406 0.91706 1.20533 1.00763 0.95639 0.95057 1.20705 1.02046 1.00789 0.92306 1.21159 0.97570 0.93919 0.98732 1.21473 1.02222 1.01422 0.90727 1.21623 1.03557 0.97675 0.97455 1.86311 1.73983 1.22121 1.09158 1.23806 1.03750 0.95821 1.07264 1.20210 1.00276 0.93688 0.96061 1.20379 0.99227 0.97645 0.92148 1.18697 0.92652 0.92670 0.94364 1.21633 1.02889 1.29149 1.03954 0.92459 1.25987 0.94715 0.96807 1.02196 1.70137 1.08800 1.38105 1.40250 0.85381 0.78677 0.78063 0.78820 1.18552 1.20192 1.20120 0.87251 0.94401 0.91574 0.91038 0.91651 0.88741 0.81520 0.82849 0.88055 0.85982 0.89095 0.92488 0.92255 0.98841 1.00297 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 10.37 113.37 1.18 2.02 16 2 O -0.35 -13.36 8.84 -92.38 -0.82 -14.18 16 3 C 0.09 3.40 5.66 22.49 0.13 3.52 16 4 C -0.12 -3.41 5.90 -19.73 -0.12 -3.53 16 5 C -0.10 -2.19 9.78 71.23 0.70 -1.50 16 6 C -0.09 -2.34 9.69 22.24 0.22 -2.12 16 7 C -0.13 -3.73 9.36 22.43 0.21 -3.52 16 8 C -0.09 -3.29 6.11 22.61 0.14 -3.15 16 9 S -0.16 -5.58 20.79 -56.49 -1.17 -6.76 16 10 C -0.14 -2.90 9.15 113.37 1.04 -1.87 16 11 C -0.10 -4.04 5.17 -19.63 -0.10 -4.14 16 12 C -0.06 -2.72 4.61 29.85 0.14 -2.58 16 13 C 0.05 3.15 4.96 29.85 0.15 3.29 16 14 C -0.54 -33.03 9.11 25.60 0.23 -32.80 16 15 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 16 C 0.00 0.03 5.46 84.66 0.46 0.49 16 17 N -0.93 -60.09 13.29 21.45 0.28 -59.80 16 18 Si 0.97 46.56 29.54 68.60 2.03 48.59 16 19 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 23 H 0.04 1.11 7.19 -2.39 -0.02 1.09 16 24 H 0.07 1.47 7.32 -2.39 -0.02 1.45 16 25 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.06 1.41 6.34 -2.39 -0.02 1.39 16 27 H 0.09 1.40 8.08 -2.39 -0.02 1.38 16 28 H 0.17 2.65 8.06 -2.92 -0.02 2.63 16 29 H 0.15 3.14 5.87 -2.91 -0.02 3.12 16 30 H 0.10 1.67 7.75 -2.39 -0.02 1.65 16 31 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.09 1.75 7.75 -2.39 -0.02 1.73 16 33 H 0.06 2.69 6.26 -2.39 -0.01 2.68 16 34 H 0.06 2.85 6.84 -2.38 -0.02 2.83 16 35 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 36 H -0.02 -1.40 8.14 -2.39 -0.02 -1.42 16 37 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -76.72 317.31 5.74 -70.98 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 1.05 Total: 7.04 kcal Atomic # 6 Polarization: -50.24 SS G_CDS: 4.36 Total: -45.87 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: 0.28 Total: -59.80 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -0.82 Total: -14.18 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Atomic # 16 Polarization: -5.58 SS G_CDS: -1.17 Total: -6.76 kcal Total: -76.72 5.74 -70.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260217582.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.974 kcal (2) G-P(sol) polarization free energy of solvation -76.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds