Wall clock time and date at job start Mon Mar 30 2020 07:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00029 * 2 1 4 4 H 1.48496 * 109.47402 * 264.72589 * 3 2 1 5 5 H 1.48493 * 109.46977 * 24.72740 * 3 2 1 6 6 H 1.48502 * 109.46880 * 144.72899 * 3 2 1 7 7 C 1.37884 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99562 * 353.56003 * 7 2 1 9 9 C 1.50700 * 119.99742 * 173.56436 * 7 2 1 10 10 H 1.08994 * 109.47455 * 0.41309 * 9 7 2 11 11 C 1.52995 * 109.46951 * 240.40979 * 9 7 2 12 12 C 1.50705 * 109.47271 * 175.31598 * 11 9 7 13 13 C 1.33637 * 126.03528 * 89.99997 * 12 11 9 14 14 N 1.31788 * 114.49906 * 180.02562 * 13 12 11 15 15 C 1.29023 * 117.12275 * 0.02562 * 14 13 12 16 16 S 1.70976 * 110.16989 * 359.72711 * 15 14 13 17 17 N 1.46898 * 109.46782 * 120.41234 * 9 7 2 18 18 C 1.46844 * 111.00262 * 290.80918 * 17 9 7 19 19 C 1.53044 * 109.52600 * 185.84278 * 18 17 9 20 20 C 1.53123 * 109.27413 * 300.81934 * 19 18 17 21 21 C 1.53122 * 109.21392 * 57.62445 * 20 19 18 22 22 C 1.46847 * 111.00399 * 55.01991 * 17 9 7 23 23 H 0.96995 * 120.00054 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47670 * 295.31656 * 11 9 7 25 25 H 1.09004 * 109.47356 * 55.31874 * 11 9 7 26 26 H 1.07998 * 122.75275 * 359.97438 * 13 12 11 27 27 H 1.07997 * 124.91291 * 179.97438 * 15 14 13 28 28 H 1.09002 * 109.46437 * 65.82555 * 18 17 9 29 29 H 1.09005 * 109.45237 * 305.85200 * 18 17 9 30 30 H 1.08995 * 109.50144 * 180.87852 * 19 18 17 31 31 H 1.09003 * 109.50214 * 60.76054 * 19 18 17 32 32 H 1.09001 * 109.51864 * 177.55735 * 20 19 18 33 33 H 1.09000 * 109.52425 * 297.68759 * 20 19 18 34 34 H 1.08998 * 109.50152 * 62.31135 * 21 20 19 35 35 H 1.08990 * 109.50332 * 182.43444 * 21 20 19 36 36 H 1.08995 * 109.46331 * 294.17905 * 22 17 9 37 37 H 1.09004 * 109.46144 * 54.15201 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6081 1.9821 -1.3941 5 1 1.3953 2.6822 0.5856 6 1 3.4865 1.4748 0.8085 7 6 2.0045 -1.1941 -0.0005 8 1 1.4696 -2.1264 0.1040 9 6 3.5044 -1.1981 -0.1468 10 1 3.8639 -0.1727 -0.2319 11 6 3.8921 -1.9804 -1.4032 12 6 5.3816 -1.8877 -1.6130 13 6 6.2981 -2.7292 -1.1253 14 7 7.5404 -2.4325 -1.4503 15 6 7.7227 -1.3873 -2.1844 16 16 6.2219 -0.6540 -2.5493 17 7 4.1096 -1.8330 1.0316 18 6 3.9431 -0.9941 2.2252 19 6 4.7081 -1.6139 3.3968 20 6 4.1714 -3.0233 3.6618 21 6 4.3108 -3.8632 2.3891 22 6 3.5587 -3.1772 1.2464 23 1 -0.4850 0.8400 0.0004 24 1 3.6065 -3.0254 -1.2832 25 1 3.3768 -1.5597 -2.2667 26 1 6.0419 -3.5821 -0.5143 27 1 8.6839 -1.0298 -2.5230 28 1 2.8848 -0.9270 2.4773 29 1 4.3326 0.0041 2.0245 30 1 4.5715 -0.9992 4.2865 31 1 5.7686 -1.6686 3.1508 32 1 4.7425 -3.4850 4.4673 33 1 3.1209 -2.9655 3.9468 34 1 5.3649 -3.9542 2.1269 35 1 3.8907 -4.8543 2.5594 36 1 2.5022 -3.1000 1.5030 37 1 3.6690 -3.7648 0.3349 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260219276.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:36 Heat of formation + Delta-G solvation = 36.373110 kcal Electronic energy + Delta-G solvation = -18956.478655 eV Core-core repulsion = 16245.990670 eV Total energy + Delta-G solvation = -2710.487985 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.24792 -38.27852 -34.67416 -32.24808 -31.12417 -30.11037 -28.09645 -25.85684 -23.84562 -23.32043 -22.34764 -20.23169 -19.41949 -18.85708 -17.47561 -16.96617 -15.48910 -15.00294 -14.51432 -14.10067 -13.97872 -13.69181 -13.46450 -13.19458 -13.00388 -12.74563 -12.54454 -12.38878 -11.77142 -11.45308 -11.25745 -10.94905 -10.70973 -10.59088 -10.42634 -10.24336 -10.06326 -9.67250 -9.62289 -9.25001 -9.24257 -8.84008 -8.71666 -8.31549 -7.11827 -6.26087 -4.28901 1.21446 1.81123 2.21118 3.17035 3.26186 3.27836 3.34894 4.25798 4.73806 4.81999 5.17887 5.38112 5.41191 5.49112 5.62807 5.64544 5.86633 5.90467 6.07429 6.13246 6.18786 6.22006 6.40248 6.40831 6.47315 6.55317 6.59970 6.64307 6.68451 6.85325 6.89130 6.96276 7.02819 7.47498 8.07730 8.12711 8.21526 8.35347 8.78916 9.37463 10.86106 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.014072 B = 0.010128 C = 0.006986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.305530 B = 2764.054210 C = 4007.182481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.082 3.918 3 Si 0.865 3.135 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.078 0.922 9 C 0.182 3.818 10 H 0.047 0.953 11 C -0.035 4.035 12 C -0.158 4.158 13 C 0.023 3.977 14 N -0.467 5.467 15 C -0.009 4.009 16 S 0.080 5.920 17 N -0.531 5.531 18 C 0.062 3.938 19 C -0.114 4.114 20 C -0.116 4.116 21 C -0.116 4.116 22 C 0.059 3.941 23 H 0.266 0.734 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.171 0.829 27 H 0.188 0.812 28 H 0.044 0.956 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.045 0.955 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.506 -2.718 -0.161 10.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.122 4.122 3 Si 0.692 3.308 4 H -0.198 1.198 5 H -0.214 1.214 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.096 0.904 9 C 0.074 3.926 10 H 0.065 0.935 11 C -0.076 4.076 12 C -0.279 4.279 13 C -0.126 4.126 14 N -0.181 5.181 15 C -0.307 4.307 16 S 0.331 5.669 17 N -0.255 5.255 18 C -0.066 4.066 19 C -0.152 4.152 20 C -0.153 4.153 21 C -0.154 4.154 22 C -0.069 4.069 23 H 0.076 0.924 24 H 0.098 0.902 25 H 0.093 0.907 26 H 0.188 0.812 27 H 0.205 0.795 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.074 -2.100 -0.668 11.291 hybrid contribution -0.690 0.461 0.692 1.081 sum 10.384 -1.640 0.024 10.512 Atomic orbital electron populations 1.69910 1.06362 1.27252 1.49015 1.25082 0.94623 0.98887 0.93652 0.87071 0.80471 0.83980 0.79290 1.19840 1.21415 1.18447 1.21463 0.90317 0.94950 1.51278 0.90373 1.19684 0.93403 0.93503 0.85978 0.93537 1.20535 0.84515 1.02446 1.00110 1.26347 1.02761 0.97143 1.01618 1.21527 0.85547 1.02526 1.02981 1.66248 1.23636 1.15649 1.12558 1.28023 1.02248 0.96919 1.03515 1.84022 1.01636 1.31608 1.49661 1.62480 1.57153 1.02090 1.03804 1.21851 0.98839 0.95844 0.90110 1.21584 1.00178 0.95877 0.97594 1.21509 1.00638 0.95989 0.97210 1.21603 1.00783 0.97572 0.95397 1.21880 0.97426 0.90852 0.96734 0.92438 0.90179 0.90733 0.81233 0.79482 0.93799 0.92437 0.92828 0.92127 0.93122 0.92453 0.92120 0.92769 0.93689 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.63 13.96 55.43 0.77 -24.86 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.86 20.43 26.98 -169.99 -4.59 15.84 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.26 -5.92 5.58 56.52 0.32 -5.61 16 7 C -0.54 -13.74 7.13 -34.44 -0.25 -13.98 16 8 H 0.08 2.18 7.01 -52.49 -0.37 1.81 16 9 C 0.18 3.93 1.68 -68.87 -0.12 3.81 16 10 H 0.05 1.08 4.60 -51.93 -0.24 0.84 16 11 C -0.04 -0.67 5.11 -27.88 -0.14 -0.81 16 12 C -0.16 -2.76 5.60 -35.92 -0.20 -2.96 16 13 C 0.02 0.39 11.13 -19.18 -0.21 0.17 16 14 N -0.47 -7.83 10.54 -15.75 -0.17 -8.00 16 15 C -0.01 -0.14 12.23 51.58 0.63 0.49 16 16 S 0.08 1.24 23.22 -107.50 -2.50 -1.26 16 17 N -0.53 -10.43 4.21 -228.08 -0.96 -11.39 16 18 C 0.06 1.22 5.18 -3.83 -0.02 1.20 16 19 C -0.11 -1.85 6.10 -26.65 -0.16 -2.02 16 20 C -0.12 -1.74 6.00 -26.60 -0.16 -1.90 16 21 C -0.12 -1.77 6.10 -26.65 -0.16 -1.93 16 22 C 0.06 1.08 4.71 -3.83 -0.02 1.06 16 23 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.08 1.47 6.20 -51.93 -0.32 1.15 16 25 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 26 H 0.17 2.75 8.06 -52.49 -0.42 2.33 16 27 H 0.19 2.00 8.06 -52.49 -0.42 1.57 16 28 H 0.04 0.97 7.57 -51.93 -0.39 0.58 16 29 H 0.06 1.19 6.85 -51.93 -0.36 0.83 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.04 0.94 6.69 -51.93 -0.35 0.59 16 37 H 0.06 1.08 6.09 -51.93 -0.32 0.76 16 LS Contribution 301.56 15.07 4.54 4.54 Total: -1.00 -27.87 301.56 -9.17 -37.03 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.37 Total: 2.84 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -0.91 Total: -14.75 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: -0.35 Total: -44.25 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.59 Total: 15.84 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.50 Total: -1.26 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.87 -9.17 -37.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260219276.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.407 kcal (2) G-P(sol) polarization free energy of solvation -27.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds