Wall clock time and date at job start Mon Mar 30 2020 07:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00029 * 2 1 4 4 H 1.48496 * 109.47402 * 264.72589 * 3 2 1 5 5 H 1.48493 * 109.46977 * 24.72740 * 3 2 1 6 6 H 1.48502 * 109.46880 * 144.72899 * 3 2 1 7 7 C 1.37884 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99562 * 353.56003 * 7 2 1 9 9 C 1.50700 * 119.99742 * 173.56436 * 7 2 1 10 10 H 1.08994 * 109.47455 * 0.41309 * 9 7 2 11 11 C 1.52995 * 109.46951 * 240.40979 * 9 7 2 12 12 C 1.50705 * 109.47271 * 175.31598 * 11 9 7 13 13 C 1.33637 * 126.03528 * 89.99997 * 12 11 9 14 14 N 1.31788 * 114.49906 * 180.02562 * 13 12 11 15 15 C 1.29023 * 117.12275 * 0.02562 * 14 13 12 16 16 S 1.70976 * 110.16989 * 359.72711 * 15 14 13 17 17 N 1.46898 * 109.46782 * 120.41234 * 9 7 2 18 18 C 1.46844 * 111.00262 * 290.80918 * 17 9 7 19 19 C 1.53044 * 109.52600 * 185.84278 * 18 17 9 20 20 C 1.53123 * 109.27413 * 300.81934 * 19 18 17 21 21 C 1.53122 * 109.21392 * 57.62445 * 20 19 18 22 22 C 1.46847 * 111.00399 * 55.01991 * 17 9 7 23 23 H 0.96995 * 120.00054 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47670 * 295.31656 * 11 9 7 25 25 H 1.09004 * 109.47356 * 55.31874 * 11 9 7 26 26 H 1.07998 * 122.75275 * 359.97438 * 13 12 11 27 27 H 1.07997 * 124.91291 * 179.97438 * 15 14 13 28 28 H 1.09002 * 109.46437 * 65.82555 * 18 17 9 29 29 H 1.09005 * 109.45237 * 305.85200 * 18 17 9 30 30 H 1.08995 * 109.50144 * 180.87852 * 19 18 17 31 31 H 1.09003 * 109.50214 * 60.76054 * 19 18 17 32 32 H 1.09001 * 109.51864 * 177.55735 * 20 19 18 33 33 H 1.09000 * 109.52425 * 297.68759 * 20 19 18 34 34 H 1.08998 * 109.50152 * 62.31135 * 21 20 19 35 35 H 1.08990 * 109.50332 * 182.43444 * 21 20 19 36 36 H 1.08995 * 109.46331 * 294.17905 * 22 17 9 37 37 H 1.09004 * 109.46144 * 54.15201 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6081 1.9821 -1.3941 5 1 1.3953 2.6822 0.5856 6 1 3.4865 1.4748 0.8085 7 6 2.0045 -1.1941 -0.0005 8 1 1.4696 -2.1264 0.1040 9 6 3.5044 -1.1981 -0.1468 10 1 3.8639 -0.1727 -0.2319 11 6 3.8921 -1.9804 -1.4032 12 6 5.3816 -1.8877 -1.6130 13 6 6.2981 -2.7292 -1.1253 14 7 7.5404 -2.4325 -1.4503 15 6 7.7227 -1.3873 -2.1844 16 16 6.2219 -0.6540 -2.5493 17 7 4.1096 -1.8330 1.0316 18 6 3.9431 -0.9941 2.2252 19 6 4.7081 -1.6139 3.3968 20 6 4.1714 -3.0233 3.6618 21 6 4.3108 -3.8632 2.3891 22 6 3.5587 -3.1772 1.2464 23 1 -0.4850 0.8400 0.0004 24 1 3.6065 -3.0254 -1.2832 25 1 3.3768 -1.5597 -2.2667 26 1 6.0419 -3.5821 -0.5143 27 1 8.6839 -1.0298 -2.5230 28 1 2.8848 -0.9270 2.4773 29 1 4.3326 0.0041 2.0245 30 1 4.5715 -0.9992 4.2865 31 1 5.7686 -1.6686 3.1508 32 1 4.7425 -3.4850 4.4673 33 1 3.1209 -2.9655 3.9468 34 1 5.3649 -3.9542 2.1269 35 1 3.8907 -4.8543 2.5594 36 1 2.5022 -3.1000 1.5030 37 1 3.6690 -3.7648 0.3349 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260219276.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:36 Heat of formation + Delta-G solvation = 19.011546 kcal Electronic energy + Delta-G solvation = -18957.231509 eV Core-core repulsion = 16245.990670 eV Total energy + Delta-G solvation = -2711.240839 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.58842 -39.74811 -36.22266 -34.20210 -32.54757 -31.53255 -29.66398 -27.44988 -25.40659 -24.73496 -23.78694 -21.77140 -20.72467 -20.41371 -18.97637 -18.69460 -17.07669 -16.43044 -16.16628 -15.63068 -15.34436 -15.13072 -14.80825 -14.69205 -14.59718 -14.23219 -14.20977 -13.80856 -13.29455 -13.04853 -12.80186 -12.67914 -12.34840 -12.07260 -11.96849 -11.76754 -11.49421 -11.44129 -11.10119 -10.91597 -10.74842 -10.49250 -10.04390 -9.63814 -8.83420 -8.35718 -6.40001 -0.02325 0.57874 0.97981 1.26630 1.30206 1.37255 2.07929 2.26290 2.95365 3.44011 3.61638 4.03678 4.06836 4.16390 4.22452 4.39998 4.47652 4.53709 4.61355 4.68749 4.74864 4.88380 4.90477 5.07703 5.10400 5.12051 5.15975 5.24577 5.26076 5.33923 5.38962 5.45297 5.52204 5.65307 6.16835 6.47047 6.59754 6.69508 6.89235 7.29310 8.80279 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.014072 B = 0.010128 C = 0.006986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.305530 B = 2764.054210 C = 4007.182481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.029 3.971 3 Si 0.918 3.082 4 H -0.262 1.262 5 H -0.291 1.291 6 H -0.247 1.247 7 C -0.528 4.528 8 H 0.041 0.959 9 C 0.186 3.814 10 H 0.036 0.964 11 C -0.025 4.025 12 C -0.190 4.190 13 C 0.032 3.968 14 N -0.492 5.492 15 C 0.015 3.985 16 S 0.094 5.906 17 N -0.520 5.520 18 C 0.060 3.940 19 C -0.107 4.107 20 C -0.115 4.115 21 C -0.108 4.108 22 C 0.062 3.938 23 H 0.265 0.735 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.174 0.826 27 H 0.229 0.771 28 H 0.010 0.990 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.008 0.992 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.852 -2.807 0.046 14.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.171 4.171 3 Si 0.743 3.257 4 H -0.187 1.187 5 H -0.217 1.217 6 H -0.171 1.171 7 C -0.568 4.568 8 H 0.059 0.941 9 C 0.078 3.922 10 H 0.054 0.946 11 C -0.066 4.066 12 C -0.310 4.310 13 C -0.116 4.116 14 N -0.205 5.205 15 C -0.282 4.282 16 S 0.345 5.655 17 N -0.244 5.244 18 C -0.068 4.068 19 C -0.145 4.145 20 C -0.152 4.152 21 C -0.146 4.146 22 C -0.066 4.066 23 H 0.074 0.926 24 H 0.099 0.901 25 H 0.082 0.918 26 H 0.191 0.809 27 H 0.246 0.754 28 H 0.028 0.972 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.027 0.973 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.436 -2.200 -0.459 14.610 hybrid contribution -1.671 0.417 0.589 1.820 sum 12.765 -1.783 0.130 12.890 Atomic orbital electron populations 1.70045 1.08057 1.27910 1.51869 1.25792 0.95166 1.02208 0.93896 0.86205 0.79593 0.80053 0.79879 1.18738 1.21728 1.17144 1.21655 0.92468 0.93234 1.49411 0.94072 1.19582 0.90654 0.93853 0.88160 0.94560 1.20176 0.86330 1.01854 0.98196 1.26024 1.01650 0.99172 1.04196 1.21614 0.85716 1.02183 1.02121 1.66328 1.23190 1.16909 1.14098 1.28767 1.03296 0.95246 1.00925 1.83996 1.01890 1.30676 1.48973 1.62513 1.56144 1.02518 1.03197 1.21896 0.97352 0.95998 0.91578 1.21542 0.99894 0.96626 0.96412 1.21523 1.00366 0.95386 0.97964 1.21568 1.00894 0.98124 0.94019 1.21910 0.95782 0.90443 0.98485 0.92603 0.90132 0.91795 0.80936 0.75433 0.97192 0.93469 0.91207 0.91222 0.90045 0.93721 0.90981 0.90822 0.97318 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.68 13.96 21.45 0.30 -56.38 16 2 C 0.03 1.60 5.47 84.66 0.46 2.06 16 3 Si 0.92 42.85 26.98 68.60 1.85 44.70 16 4 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.25 -10.93 5.58 99.48 0.55 -10.37 16 7 C -0.53 -28.01 7.13 25.60 0.18 -27.83 16 8 H 0.04 2.44 7.01 -2.91 -0.02 2.42 16 9 C 0.19 8.11 1.68 44.17 0.07 8.19 16 10 H 0.04 1.67 4.60 -2.39 -0.01 1.66 16 11 C -0.02 -0.95 5.11 29.85 0.15 -0.80 16 12 C -0.19 -6.34 5.60 24.64 0.14 -6.21 16 13 C 0.03 1.03 11.13 83.65 0.93 1.96 16 14 N -0.49 -14.87 10.54 -203.75 -2.15 -17.02 16 15 C 0.02 0.38 12.23 130.66 1.60 1.98 16 16 S 0.09 2.64 23.22 -56.49 -1.31 1.33 16 17 N -0.52 -20.31 4.21 -875.51 -3.69 -24.00 16 18 C 0.06 2.37 5.18 86.33 0.45 2.82 16 19 C -0.11 -3.24 6.10 30.65 0.19 -3.05 16 20 C -0.11 -3.18 6.00 30.68 0.18 -3.00 16 21 C -0.11 -3.08 6.10 30.65 0.19 -2.89 16 22 C 0.06 2.26 4.71 86.33 0.41 2.67 16 23 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 24 H 0.08 3.00 6.20 -2.39 -0.01 2.98 16 25 H 0.06 2.53 8.14 -2.38 -0.02 2.51 16 26 H 0.17 5.24 8.06 -2.91 -0.02 5.22 16 27 H 0.23 3.63 8.06 -2.91 -0.02 3.61 16 28 H 0.01 0.45 7.57 -2.39 -0.02 0.43 16 29 H 0.05 1.92 6.85 -2.38 -0.02 1.90 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.01 0.37 6.69 -2.39 -0.02 0.36 16 37 H 0.07 2.33 6.09 -2.38 -0.01 2.31 16 Total: -1.00 -62.16 301.56 0.85 -61.31 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.90 Total: 14.16 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 4.95 Total: -24.09 kcal Atomic # 7 Polarization: -91.86 SS G_CDS: -5.54 Total: -97.40 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.85 Total: 44.70 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -1.31 Total: 1.33 kcal Total: -62.16 0.85 -61.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260219276.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.317 kcal (2) G-P(sol) polarization free energy of solvation -62.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds