Wall clock time and date at job start Mon Mar 30 2020 06:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76198 * 102.99840 * 2 1 4 4 C 1.38941 * 120.02763 * 359.97438 * 3 2 1 5 5 C 1.38065 * 119.97610 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.98626 * 180.02562 * 5 4 3 7 7 C 1.38726 * 120.02619 * 359.97438 * 5 4 3 8 8 O 1.36010 * 119.97753 * 180.02562 * 7 5 4 9 9 C 1.38688 * 120.05235 * 0.03611 * 7 5 4 10 10 C 1.38121 * 120.02443 * 0.02562 * 9 7 5 11 11 C 1.50693 * 120.01232 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47189 * 245.42783 * 11 10 9 13 13 C 1.52993 * 109.47567 * 5.43211 * 11 10 9 14 14 C 1.50708 * 109.47026 * 125.43315 * 11 10 9 15 15 H 1.08003 * 119.99768 * 359.16502 * 14 11 10 16 16 C 1.37875 * 120.00182 * 179.16301 * 14 11 10 17 17 N 1.31517 * 119.99885 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 120.00306 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47065 * 59.99668 * 18 16 14 20 20 H 1.48493 * 109.47373 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47005 * 300.00222 * 18 16 14 22 22 H 1.09003 * 109.47100 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47450 * 300.00216 * 1 2 3 24 24 H 1.09000 * 109.46642 * 60.00284 * 1 2 3 25 25 H 1.08001 * 120.00650 * 0.28204 * 4 3 2 26 26 H 1.09001 * 109.47256 * 90.00524 * 6 5 4 27 27 H 1.09002 * 109.47331 * 210.00695 * 6 5 4 28 28 H 1.09005 * 109.47033 * 330.00231 * 6 5 4 29 29 H 0.96701 * 113.99769 * 89.99377 * 8 7 5 30 30 H 1.08001 * 119.99572 * 179.97438 * 9 7 5 31 31 H 1.08999 * 109.46492 * 60.00338 * 12 11 10 32 32 H 1.08997 * 109.47308 * 180.02562 * 12 11 10 33 33 H 1.08994 * 109.47005 * 300.00477 * 12 11 10 34 34 H 1.08999 * 109.47415 * 59.99467 * 13 11 10 35 35 H 1.08997 * 109.47342 * 180.02562 * 13 11 10 36 36 H 1.09008 * 109.46997 * 300.00042 * 13 11 10 37 37 H 0.96998 * 120.00097 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1946 2.6649 -0.0005 5 6 1.5064 4.0099 0.0000 6 6 0.4049 5.0383 0.0000 7 6 2.8332 4.4149 0.0016 8 8 3.1392 5.7401 0.0027 9 6 3.8479 3.4696 0.0019 10 6 3.5385 2.1235 0.0001 11 6 4.6413 1.0965 -0.0001 12 6 4.6069 0.3115 -1.3130 13 6 5.9931 1.7996 0.1384 14 6 4.4466 0.1500 1.1563 15 1 3.6157 0.2873 1.8325 16 6 5.3291 -0.8912 1.3512 17 7 6.3411 -1.0582 0.5280 18 14 5.0881 -2.0640 2.7850 19 1 3.7673 -2.7315 2.6620 20 1 6.1637 -3.0878 2.7732 21 1 5.1421 -1.3047 4.0600 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 0.1616 2.3497 0.0036 26 1 0.1390 5.2860 1.0277 27 1 0.7468 5.9369 -0.5135 28 1 -0.4680 4.6359 -0.5142 29 1 3.2266 6.1229 0.8864 30 1 4.8806 3.7859 0.0028 31 1 4.7478 0.9961 -2.1493 32 1 5.4043 -0.4316 -1.3130 33 1 3.6439 -0.1894 -1.4116 34 1 6.0176 2.3589 1.0736 35 1 6.7907 1.0568 0.1378 36 1 6.1339 2.4842 -0.6981 37 1 6.9622 -1.7905 0.6653 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260362828.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:43 Heat of formation + Delta-G solvation = -27.590362 kcal Electronic energy + Delta-G solvation = -18744.072234 eV Core-core repulsion = 15998.517834 eV Total energy + Delta-G solvation = -2745.554400 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.50050 -36.89044 -35.10591 -32.22812 -30.39003 -29.82086 -28.30289 -25.91545 -25.72703 -25.12442 -21.99350 -21.51011 -19.23005 -17.50301 -16.49554 -15.91615 -15.30865 -15.07852 -14.48422 -14.03259 -13.73061 -13.38445 -13.13837 -13.02440 -12.79682 -12.36550 -12.05371 -11.96370 -11.64617 -11.30629 -11.24837 -11.15550 -10.87149 -10.67181 -10.50239 -10.19118 -10.14593 -9.70655 -9.56509 -9.07691 -8.79006 -8.64286 -8.29982 -7.95267 -6.39289 -5.97265 -4.03149 1.71711 1.94459 2.33314 3.24548 3.36092 3.37667 3.42133 4.10347 4.45425 4.68089 5.25500 5.29312 5.34336 5.49415 5.50658 5.56595 5.75467 5.92799 5.99535 6.05163 6.17644 6.30778 6.55457 6.70373 6.72377 6.78856 6.90770 7.00735 7.06619 7.17085 7.39528 7.42300 7.63485 7.76460 8.04005 8.07709 8.18474 8.41990 8.93850 9.57724 11.02820 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020294 B = 0.008065 C = 0.006604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.420885 B = 3470.859871 C = 4239.106458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 S -0.017 6.017 3 C -0.090 4.090 4 C -0.128 4.128 5 C -0.122 4.122 6 C -0.103 4.103 7 C 0.085 3.915 8 O -0.500 6.500 9 C -0.136 4.136 10 C -0.004 4.004 11 C 0.093 3.907 12 C -0.137 4.137 13 C -0.132 4.132 14 C -0.487 4.487 15 H 0.067 0.933 16 C 0.071 3.929 17 N -0.883 5.883 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.289 1.289 21 H -0.278 1.278 22 H 0.094 0.906 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.117 0.883 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.379 0.621 30 H 0.132 0.868 31 H 0.007 0.993 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.028 0.972 35 H 0.086 0.914 36 H 0.012 0.988 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.620 6.786 -0.372 10.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.372 4.372 2 S 0.230 5.770 3 C -0.203 4.203 4 C -0.152 4.152 5 C -0.124 4.124 6 C -0.160 4.160 7 C 0.039 3.961 8 O -0.309 6.309 9 C -0.156 4.156 10 C -0.010 4.010 11 C 0.092 3.908 12 C -0.195 4.195 13 C -0.189 4.189 14 C -0.528 4.528 15 H 0.085 0.915 16 C -0.131 4.131 17 N -0.521 5.521 18 Si 0.717 3.283 19 H -0.199 1.199 20 H -0.214 1.214 21 H -0.204 1.204 22 H 0.112 0.888 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.135 0.865 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.233 0.767 30 H 0.150 0.850 31 H 0.026 0.974 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.105 0.895 36 H 0.031 0.969 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.918 5.478 -1.033 9.684 hybrid contribution -0.971 0.655 1.330 1.772 sum -8.890 6.133 0.297 10.804 Atomic orbital electron populations 1.24060 1.03847 1.05447 1.03866 1.87048 0.97654 1.01487 1.90790 1.21745 0.95993 0.97331 1.05196 1.20805 0.97861 0.91922 1.04654 1.19808 0.93933 0.94190 1.04445 1.20573 0.96121 0.97767 1.01496 1.18241 0.91292 0.82799 1.03801 1.84802 1.92531 1.20781 1.32805 1.21428 0.99363 0.92256 1.02573 1.20277 0.93632 0.94298 0.92748 1.17337 0.88181 0.89872 0.95367 1.21984 1.02880 1.00253 0.94415 1.21886 1.01176 0.99136 0.96737 1.20985 1.10827 1.10309 1.10659 0.91502 1.24843 0.94935 0.97205 0.96111 1.69805 1.14628 1.31075 1.36615 0.86687 0.77938 0.80746 0.82961 1.19873 1.21439 1.20384 0.88777 0.91132 0.91362 0.86492 0.92087 0.91358 0.92272 0.76659 0.84993 0.97373 0.89130 0.93346 0.95280 0.89535 0.96878 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.01 9.15 101.05 0.92 -2.09 16 2 S -0.02 -0.34 16.65 -107.50 -1.79 -2.13 16 3 C -0.09 -1.83 5.74 -39.08 -0.22 -2.05 16 4 C -0.13 -2.26 9.01 -39.38 -0.35 -2.61 16 5 C -0.12 -2.03 5.89 -104.51 -0.62 -2.65 16 6 C -0.10 -1.32 9.79 36.01 0.35 -0.97 16 7 C 0.09 1.51 6.68 -39.23 -0.26 1.25 16 8 O -0.50 -7.52 12.54 -19.77 -0.25 -7.77 16 9 C -0.14 -2.71 8.93 -39.46 -0.35 -3.06 16 10 C 0.00 -0.09 4.73 -104.42 -0.49 -0.58 16 11 C 0.09 2.22 0.48 -156.81 -0.08 2.14 16 12 C -0.14 -3.28 8.04 37.16 0.30 -2.98 16 13 C -0.13 -3.08 6.93 37.15 0.26 -2.82 16 14 C -0.49 -12.49 5.95 -34.44 -0.21 -12.70 16 15 H 0.07 1.76 6.71 -52.48 -0.35 1.41 16 16 C 0.07 1.85 5.15 -17.82 -0.09 1.76 16 17 N -0.88 -23.50 9.35 55.43 0.52 -22.98 16 18 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H 0.09 1.24 8.14 -51.92 -0.42 0.81 16 23 H 0.07 0.98 7.74 -51.92 -0.40 0.57 16 24 H 0.07 0.92 7.75 -51.92 -0.40 0.52 16 25 H 0.12 1.80 5.87 -52.49 -0.31 1.49 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.86 7.53 -51.93 -0.39 0.47 16 28 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 29 H 0.38 3.92 9.06 45.56 0.41 4.33 16 30 H 0.13 2.56 5.91 -52.49 -0.31 2.25 16 31 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.09 2.34 6.00 -51.93 -0.31 2.03 16 33 H 0.05 1.13 5.38 -47.39 -0.26 0.88 16 34 H 0.03 0.65 7.77 -51.93 -0.40 0.25 16 35 H 0.09 2.20 6.14 -51.93 -0.32 1.88 16 36 H 0.01 0.27 7.26 -51.92 -0.38 -0.11 16 37 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 299.80 15.07 4.52 4.52 Total: -1.00 -27.83 299.80 -7.11 -34.94 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -4.24 Total: 5.10 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: -0.84 Total: -27.37 kcal Atomic # 7 Polarization: -23.50 SS G_CDS: 0.52 Total: -22.98 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -0.25 Total: -7.77 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -0.34 SS G_CDS: -1.79 Total: -2.13 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.83 -7.11 -34.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260362828.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.346 kcal (2) G-P(sol) polarization free energy of solvation -27.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds