Wall clock time and date at job start Mon Mar 30 2020 06:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76198 * 102.99840 * 2 1 4 4 C 1.38941 * 120.02763 * 359.97438 * 3 2 1 5 5 C 1.38065 * 119.97610 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.98626 * 180.02562 * 5 4 3 7 7 C 1.38726 * 120.02619 * 359.97438 * 5 4 3 8 8 O 1.36010 * 119.97753 * 180.02562 * 7 5 4 9 9 C 1.38688 * 120.05235 * 0.03611 * 7 5 4 10 10 C 1.38121 * 120.02443 * 0.02562 * 9 7 5 11 11 C 1.50693 * 120.01232 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47189 * 245.42783 * 11 10 9 13 13 C 1.52993 * 109.47567 * 5.43211 * 11 10 9 14 14 C 1.50708 * 109.47026 * 125.43315 * 11 10 9 15 15 H 1.08003 * 119.99768 * 359.16502 * 14 11 10 16 16 C 1.37875 * 120.00182 * 179.16301 * 14 11 10 17 17 N 1.31517 * 119.99885 * 0.02562 * 16 14 11 18 18 Si 1.86797 * 120.00306 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47065 * 59.99668 * 18 16 14 20 20 H 1.48493 * 109.47373 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47005 * 300.00222 * 18 16 14 22 22 H 1.09003 * 109.47100 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47450 * 300.00216 * 1 2 3 24 24 H 1.09000 * 109.46642 * 60.00284 * 1 2 3 25 25 H 1.08001 * 120.00650 * 0.28204 * 4 3 2 26 26 H 1.09001 * 109.47256 * 90.00524 * 6 5 4 27 27 H 1.09002 * 109.47331 * 210.00695 * 6 5 4 28 28 H 1.09005 * 109.47033 * 330.00231 * 6 5 4 29 29 H 0.96701 * 113.99769 * 89.99377 * 8 7 5 30 30 H 1.08001 * 119.99572 * 179.97438 * 9 7 5 31 31 H 1.08999 * 109.46492 * 60.00338 * 12 11 10 32 32 H 1.08997 * 109.47308 * 180.02562 * 12 11 10 33 33 H 1.08994 * 109.47005 * 300.00477 * 12 11 10 34 34 H 1.08999 * 109.47415 * 59.99467 * 13 11 10 35 35 H 1.08997 * 109.47342 * 180.02562 * 13 11 10 36 36 H 1.09008 * 109.46997 * 300.00042 * 13 11 10 37 37 H 0.96998 * 120.00097 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1946 2.6649 -0.0005 5 6 1.5064 4.0099 0.0000 6 6 0.4049 5.0383 0.0000 7 6 2.8332 4.4149 0.0016 8 8 3.1392 5.7401 0.0027 9 6 3.8479 3.4696 0.0019 10 6 3.5385 2.1235 0.0001 11 6 4.6413 1.0965 -0.0001 12 6 4.6069 0.3115 -1.3130 13 6 5.9931 1.7996 0.1384 14 6 4.4466 0.1500 1.1563 15 1 3.6157 0.2873 1.8325 16 6 5.3291 -0.8912 1.3512 17 7 6.3411 -1.0582 0.5280 18 14 5.0881 -2.0640 2.7850 19 1 3.7673 -2.7315 2.6620 20 1 6.1637 -3.0878 2.7732 21 1 5.1421 -1.3047 4.0600 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 0.1616 2.3497 0.0036 26 1 0.1390 5.2860 1.0277 27 1 0.7468 5.9369 -0.5135 28 1 -0.4680 4.6359 -0.5142 29 1 3.2266 6.1229 0.8864 30 1 4.8806 3.7859 0.0028 31 1 4.7478 0.9961 -2.1493 32 1 5.4043 -0.4316 -1.3130 33 1 3.6439 -0.1894 -1.4116 34 1 6.0176 2.3589 1.0736 35 1 6.7907 1.0568 0.1378 36 1 6.1339 2.4842 -0.6981 37 1 6.9622 -1.7905 0.6653 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260362828.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:43 Heat of formation + Delta-G solvation = -43.337239 kcal Electronic energy + Delta-G solvation = -18744.755070 eV Core-core repulsion = 15998.517834 eV Total energy + Delta-G solvation = -2746.237236 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.90836 -38.37295 -36.62680 -33.90350 -31.91293 -31.26185 -29.58600 -27.55229 -27.31802 -26.98742 -23.43778 -22.98189 -20.86709 -18.95910 -18.03027 -17.63345 -16.77127 -16.65926 -16.10124 -15.41883 -15.09574 -14.94599 -14.59426 -14.46415 -14.10077 -13.77455 -13.41111 -13.25008 -13.08465 -13.04290 -12.88447 -12.68028 -12.53752 -12.44119 -12.31207 -12.02216 -11.79113 -11.51946 -11.09788 -10.81207 -10.49474 -10.20221 -10.08258 -9.41264 -7.98774 -7.85284 -6.02718 0.30786 0.51681 0.93032 1.46023 1.47798 1.54069 1.91362 2.49964 2.73031 3.33102 3.42128 4.00146 4.01344 4.31576 4.38775 4.39754 4.53897 4.69608 4.83074 4.84675 4.89827 4.89925 4.96260 5.06112 5.08886 5.15537 5.25207 5.42895 5.50965 5.54699 5.59946 5.73678 5.77298 5.97707 6.19201 6.25840 6.50179 6.92869 6.96830 7.59337 9.05847 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020294 B = 0.008065 C = 0.006604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.420885 B = 3470.859871 C = 4239.106458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 S -0.092 6.092 3 C -0.099 4.099 4 C -0.126 4.126 5 C -0.117 4.117 6 C -0.099 4.099 7 C 0.091 3.909 8 O -0.500 6.500 9 C -0.152 4.152 10 C -0.036 4.036 11 C 0.090 3.910 12 C -0.128 4.128 13 C -0.121 4.121 14 C -0.485 4.485 15 H 0.056 0.944 16 C 0.029 3.971 17 N -0.906 5.906 18 Si 0.935 3.065 19 H -0.272 1.272 20 H -0.288 1.288 21 H -0.278 1.278 22 H 0.112 0.888 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.144 0.856 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.403 0.597 30 H 0.127 0.873 31 H 0.010 0.990 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.026 0.974 35 H 0.061 0.939 36 H 0.024 0.976 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.374 8.371 -0.027 14.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.347 4.347 2 S 0.154 5.846 3 C -0.212 4.212 4 C -0.150 4.150 5 C -0.119 4.119 6 C -0.156 4.156 7 C 0.044 3.956 8 O -0.312 6.312 9 C -0.172 4.172 10 C -0.041 4.041 11 C 0.090 3.910 12 C -0.187 4.187 13 C -0.179 4.179 14 C -0.525 4.525 15 H 0.074 0.926 16 C -0.169 4.169 17 N -0.546 5.546 18 Si 0.762 3.238 19 H -0.197 1.197 20 H -0.214 1.214 21 H -0.204 1.204 22 H 0.130 0.870 23 H 0.102 0.898 24 H 0.104 0.896 25 H 0.161 0.839 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.261 0.739 30 H 0.145 0.855 31 H 0.029 0.971 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.652 7.087 -0.663 12.811 hybrid contribution -0.266 0.299 1.201 1.266 sum -10.918 7.386 0.538 13.193 Atomic orbital electron populations 1.23982 0.98172 1.07173 1.05332 1.87047 1.03344 1.02938 1.91266 1.21769 0.96081 0.97353 1.06009 1.21126 0.98454 0.91885 1.03527 1.20261 0.94647 0.94784 1.02203 1.20643 0.95143 0.96643 1.03124 1.18242 0.91288 0.83401 1.02656 1.84742 1.92415 1.19226 1.34860 1.21471 0.99981 0.92216 1.03509 1.20112 0.93822 0.94496 0.95667 1.17242 0.89094 0.90317 0.94392 1.21837 1.02028 0.99772 0.95033 1.21740 1.00543 0.98530 0.97086 1.21073 1.10104 1.10584 1.10763 0.92616 1.25387 0.95066 0.98567 0.97926 1.69927 1.15298 1.31516 1.37819 0.85957 0.77680 0.79303 0.80848 1.19739 1.21421 1.20358 0.86988 0.89764 0.89647 0.83864 0.90046 0.90862 0.90579 0.73935 0.85492 0.97075 0.91593 0.93141 0.95453 0.91979 0.95686 0.93321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.68 9.15 113.37 1.04 -3.65 16 2 S -0.09 -3.60 16.65 -56.49 -0.94 -4.54 16 3 C -0.10 -3.95 5.74 22.60 0.13 -3.82 16 4 C -0.13 -4.07 9.01 22.40 0.20 -3.87 16 5 C -0.12 -3.50 5.89 -19.79 -0.12 -3.61 16 6 C -0.10 -2.07 9.79 71.24 0.70 -1.37 16 7 C 0.09 3.01 6.68 22.49 0.15 3.16 16 8 O -0.50 -13.53 12.54 -93.67 -1.17 -14.70 16 9 C -0.15 -5.95 8.93 22.35 0.20 -5.75 16 10 C -0.04 -1.56 4.73 -19.74 -0.09 -1.65 16 11 C 0.09 4.40 0.48 -53.67 -0.03 4.38 16 12 C -0.13 -6.35 8.04 71.98 0.58 -5.77 16 13 C -0.12 -5.85 6.93 71.98 0.50 -5.35 16 14 C -0.49 -25.50 5.95 25.60 0.15 -25.34 16 15 H 0.06 2.99 6.71 -2.91 -0.02 2.98 16 16 C 0.03 1.57 5.15 84.65 0.44 2.01 16 17 N -0.91 -49.97 9.35 21.45 0.20 -49.77 16 18 Si 0.93 43.28 29.54 68.60 2.03 45.31 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H 0.11 2.56 8.14 -2.39 -0.02 2.55 16 23 H 0.08 2.00 7.74 -2.39 -0.02 1.98 16 24 H 0.08 1.97 7.75 -2.39 -0.02 1.95 16 25 H 0.14 3.79 5.87 -2.91 -0.02 3.77 16 26 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.07 1.50 7.53 -2.39 -0.02 1.48 16 28 H 0.08 1.37 8.08 -2.38 -0.02 1.35 16 29 H 0.40 6.96 9.06 -74.06 -0.67 6.29 16 30 H 0.13 4.94 5.91 -2.91 -0.02 4.93 16 31 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 3.56 6.00 -2.39 -0.01 3.54 16 33 H 0.05 2.43 5.38 -5.28 -0.03 2.41 16 34 H 0.03 1.26 7.77 -2.39 -0.02 1.24 16 35 H 0.06 3.28 6.14 -2.39 -0.01 3.26 16 36 H 0.02 1.09 7.26 -2.38 -0.02 1.07 16 37 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -61.24 299.80 4.36 -56.89 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.40 Total: 17.45 kcal Atomic # 6 Polarization: -54.49 SS G_CDS: 3.85 Total: -50.64 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.20 Total: -49.77 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -1.17 Total: -14.70 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -0.94 Total: -4.54 kcal Total: -61.24 4.36 -56.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260362828.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.551 kcal (2) G-P(sol) polarization free energy of solvation -61.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds