Wall clock time and date at job start Mon Mar 30 2020 07:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99447 * 2 1 4 4 H 1.48499 * 109.46998 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47088 * 299.99304 * 3 2 1 6 6 H 1.48499 * 109.47487 * 59.99619 * 3 2 1 7 7 C 1.37873 * 120.00442 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00023 * 175.49178 * 7 2 1 9 9 C 1.50702 * 119.99647 * 355.49059 * 7 2 1 10 10 H 1.08994 * 109.47612 * 35.13262 * 9 7 2 11 11 C 1.53002 * 109.47045 * 275.12507 * 9 7 2 12 12 C 1.50706 * 109.47080 * 177.37934 * 11 9 7 13 13 C 1.33638 * 122.74581 * 124.73526 * 12 11 9 14 14 S 1.76199 * 107.91981 * 179.97438 * 13 12 11 15 15 C 1.70968 * 90.28445 * 0.27478 * 14 13 12 16 16 N 1.29022 * 110.17121 * 359.84132 * 15 14 13 17 17 N 1.46906 * 109.46801 * 155.13255 * 9 7 2 18 18 C 1.46842 * 111.00372 * 55.92353 * 17 9 7 19 19 C 1.53032 * 109.52610 * 174.16141 * 18 17 9 20 20 C 1.53120 * 109.27731 * 59.18010 * 19 18 17 21 21 C 1.53128 * 109.15974 * 302.34665 * 20 19 18 22 22 C 1.46849 * 110.99520 * 291.71136 * 17 9 7 23 23 H 0.97008 * 119.99839 * 185.47352 * 1 2 3 24 24 H 1.08998 * 109.47558 * 297.38092 * 11 9 7 25 25 H 1.09003 * 109.46552 * 57.38510 * 11 9 7 26 26 H 1.08000 * 126.04082 * 0.04047 * 13 12 11 27 27 H 1.08000 * 124.91589 * 179.84032 * 15 14 13 28 28 H 1.09002 * 109.46383 * 294.17789 * 18 17 9 29 29 H 1.09005 * 109.46046 * 54.14061 * 18 17 9 30 30 H 1.09006 * 109.50562 * 299.24092 * 19 18 17 31 31 H 1.09001 * 109.53915 * 179.14108 * 19 18 17 32 32 H 1.09004 * 109.52504 * 182.44298 * 20 19 18 33 33 H 1.08997 * 109.57766 * 62.28371 * 20 19 18 34 34 H 1.09003 * 109.49833 * 297.71365 * 21 20 19 35 35 H 1.08999 * 109.53550 * 177.61841 * 21 20 19 36 36 H 1.08992 * 109.46781 * 305.85630 * 22 17 9 37 37 H 1.08995 * 109.46092 * 65.83783 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0821 -1.1954 -0.0730 9 6 1.2546 -2.4970 0.1037 10 1 0.3069 -2.4139 -0.4280 11 6 0.9872 -2.8163 1.5760 12 6 0.1816 -4.0860 1.6763 13 6 0.5781 -5.1386 2.3980 14 16 -0.6469 -6.3954 2.2418 15 6 -1.5664 -5.3836 1.2153 16 7 -0.9685 -4.2516 1.0545 17 7 2.0579 -3.5728 -0.4925 18 6 3.3826 -3.6508 0.1362 19 6 4.1349 -4.8686 -0.4051 20 6 4.2771 -4.7406 -1.9243 21 6 2.8855 -4.6124 -2.5504 22 6 2.1695 -3.4020 -1.9467 23 1 -0.4850 -0.8363 0.0801 24 1 1.9354 -2.9455 2.0978 25 1 0.4311 -1.9963 2.0303 26 1 1.4880 -5.2065 2.9757 27 1 -2.5110 -5.6529 0.7663 28 1 3.9461 -2.7457 -0.0904 29 1 3.2671 -3.7457 1.2160 30 1 3.5788 -5.7754 -0.1668 31 1 5.1240 -4.9181 0.0501 32 1 4.7741 -5.6266 -2.3196 33 1 4.8667 -3.8554 -2.1627 34 1 2.3099 -5.5151 -2.3457 35 1 2.9815 -4.4784 -3.6278 36 1 1.1731 -3.3163 -2.3799 37 1 2.7388 -2.4982 -2.1636 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260404588.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:30 Heat of formation + Delta-G solvation = 35.484862 kcal Electronic energy + Delta-G solvation = -18934.860123 eV Core-core repulsion = 16224.333621 eV Total energy + Delta-G solvation = -2710.526502 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.42572 -38.13882 -34.54331 -31.84674 -30.88473 -30.08706 -27.88081 -25.18860 -24.03368 -23.49910 -22.28436 -20.59915 -19.15405 -18.88127 -17.26928 -16.69552 -15.44456 -14.90672 -14.26067 -14.06743 -13.87329 -13.74907 -13.58280 -13.06588 -12.85150 -12.78741 -12.41982 -11.99400 -11.55933 -11.37961 -10.98740 -10.84425 -10.66914 -10.48994 -10.31411 -10.18010 -10.06089 -9.60537 -9.51431 -9.11358 -9.02787 -8.98302 -8.38634 -8.17734 -6.98949 -6.33770 -4.12730 1.23865 1.87230 2.18458 3.40972 3.42475 3.49418 3.56687 4.49436 4.74968 4.98537 5.33213 5.35736 5.39724 5.46502 5.66423 5.69188 5.87147 5.98177 6.08381 6.12119 6.16626 6.35799 6.38430 6.40565 6.50868 6.59635 6.68233 6.74753 6.76954 6.85134 6.97293 7.18984 7.34700 7.97058 8.17294 8.33730 8.36295 8.55776 8.83539 9.62509 11.00523 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.015011 B = 0.008383 C = 0.006107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.810356 B = 3339.251064 C = 4583.713284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.028 3.972 3 Si 1.066 2.934 4 H -0.291 1.291 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.626 4.626 8 H 0.054 0.946 9 C 0.205 3.795 10 H 0.054 0.946 11 C -0.037 4.037 12 C 0.111 3.889 13 C -0.262 4.262 14 S 0.053 5.947 15 C 0.023 3.977 16 N -0.449 5.449 17 N -0.528 5.528 18 C 0.060 3.940 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.115 4.115 22 C 0.069 3.931 23 H 0.277 0.723 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.167 0.833 27 H 0.190 0.810 28 H 0.038 0.962 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.753 -11.574 1.795 12.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.178 4.178 3 Si 0.895 3.105 4 H -0.217 1.217 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.665 4.665 8 H 0.072 0.928 9 C 0.098 3.902 10 H 0.071 0.929 11 C -0.078 4.078 12 C -0.019 4.019 13 C -0.400 4.400 14 S 0.303 5.697 15 C -0.276 4.276 16 N -0.162 5.162 17 N -0.252 5.252 18 C -0.069 4.069 19 C -0.153 4.153 20 C -0.153 4.153 21 C -0.153 4.153 22 C -0.059 4.059 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.184 0.816 27 H 0.207 0.793 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.897 -10.977 1.851 11.293 hybrid contribution 1.084 -0.181 -0.118 1.106 sum 2.981 -11.159 1.733 11.680 Atomic orbital electron populations 1.70695 1.06805 1.31726 1.44790 1.25713 0.96451 1.02387 0.93293 0.83589 0.74523 0.75351 0.77012 1.21702 1.21393 1.21358 1.22530 0.95025 0.92586 1.56390 0.92780 1.19326 0.94400 0.87394 0.89088 0.92857 1.20715 0.95882 0.89739 1.01485 1.20755 0.90854 0.98071 0.92268 1.26626 1.05418 0.96434 1.11559 1.83626 1.16360 1.22392 1.47303 1.28315 1.04471 0.92608 1.02232 1.66104 1.08788 1.20337 1.20978 1.62344 1.13320 1.46874 1.02693 1.21910 0.90907 0.95805 0.98260 1.21603 0.98966 0.99447 0.95323 1.21516 0.97176 1.00539 0.96103 1.21600 0.95904 0.99483 0.98297 1.21739 0.99251 0.95521 0.89410 0.91113 0.91752 0.90737 0.81591 0.79288 0.94399 0.92033 0.92216 0.92913 0.93110 0.92613 0.92233 0.92784 0.92334 0.94409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.62 55.43 0.76 -25.84 16 2 C 0.03 0.78 5.46 -17.82 -0.10 0.68 16 3 Si 1.07 24.81 29.91 -169.99 -5.08 19.73 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.63 -16.53 7.05 -34.44 -0.24 -16.77 16 8 H 0.05 1.45 5.90 -52.49 -0.31 1.14 16 9 C 0.21 4.94 1.39 -68.86 -0.10 4.84 16 10 H 0.05 1.48 6.43 -51.93 -0.33 1.14 16 11 C -0.04 -0.82 5.02 -27.88 -0.14 -0.96 16 12 C 0.11 2.20 5.75 -84.22 -0.48 1.71 16 13 C -0.26 -4.38 11.07 29.12 0.32 -4.06 16 14 S 0.05 0.74 23.22 -107.50 -2.50 -1.76 16 15 C 0.02 0.36 12.23 51.58 0.63 0.99 16 16 N -0.45 -8.98 10.29 -11.90 -0.12 -9.10 16 17 N -0.53 -11.18 4.27 -228.09 -0.97 -12.16 16 18 C 0.06 1.15 4.79 -3.84 -0.02 1.13 16 19 C -0.12 -1.84 6.09 -26.65 -0.16 -2.00 16 20 C -0.12 -1.77 6.00 -26.60 -0.16 -1.92 16 21 C -0.11 -1.90 6.09 -26.65 -0.16 -2.06 16 22 C 0.07 1.42 5.17 -3.83 -0.02 1.40 16 23 H 0.28 8.24 6.67 -40.82 -0.27 7.97 16 24 H 0.06 1.34 6.14 -51.93 -0.32 1.02 16 25 H 0.07 1.82 8.14 -51.93 -0.42 1.39 16 26 H 0.17 2.45 8.06 -52.49 -0.42 2.02 16 27 H 0.19 2.28 8.06 -52.49 -0.42 1.86 16 28 H 0.04 0.81 6.24 -51.93 -0.32 0.48 16 29 H 0.06 1.18 6.09 -51.93 -0.32 0.86 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 1.26 8.03 -51.93 -0.42 0.85 16 37 H 0.04 0.84 7.54 -51.93 -0.39 0.45 16 LS Contribution 304.90 15.07 4.59 4.59 Total: -1.00 -29.15 304.90 -9.24 -38.39 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.28 Total: 3.15 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: -0.63 Total: -17.01 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.34 Total: -47.10 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.08 Total: 19.73 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.50 Total: -1.76 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.15 -9.24 -38.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260404588.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.875 kcal (2) G-P(sol) polarization free energy of solvation -29.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds