Wall clock time and date at job start Mon Mar 30 2020 07:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99447 * 2 1 4 4 H 1.48499 * 109.46998 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47088 * 299.99304 * 3 2 1 6 6 H 1.48499 * 109.47487 * 59.99619 * 3 2 1 7 7 C 1.37873 * 120.00442 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00023 * 175.49178 * 7 2 1 9 9 C 1.50702 * 119.99647 * 355.49059 * 7 2 1 10 10 H 1.08994 * 109.47612 * 35.13262 * 9 7 2 11 11 C 1.53002 * 109.47045 * 275.12507 * 9 7 2 12 12 C 1.50706 * 109.47080 * 177.37934 * 11 9 7 13 13 C 1.33638 * 122.74581 * 124.73526 * 12 11 9 14 14 S 1.76199 * 107.91981 * 179.97438 * 13 12 11 15 15 C 1.70968 * 90.28445 * 0.27478 * 14 13 12 16 16 N 1.29022 * 110.17121 * 359.84132 * 15 14 13 17 17 N 1.46906 * 109.46801 * 155.13255 * 9 7 2 18 18 C 1.46842 * 111.00372 * 55.92353 * 17 9 7 19 19 C 1.53032 * 109.52610 * 174.16141 * 18 17 9 20 20 C 1.53120 * 109.27731 * 59.18010 * 19 18 17 21 21 C 1.53128 * 109.15974 * 302.34665 * 20 19 18 22 22 C 1.46849 * 110.99520 * 291.71136 * 17 9 7 23 23 H 0.97008 * 119.99839 * 185.47352 * 1 2 3 24 24 H 1.08998 * 109.47558 * 297.38092 * 11 9 7 25 25 H 1.09003 * 109.46552 * 57.38510 * 11 9 7 26 26 H 1.08000 * 126.04082 * 0.04047 * 13 12 11 27 27 H 1.08000 * 124.91589 * 179.84032 * 15 14 13 28 28 H 1.09002 * 109.46383 * 294.17789 * 18 17 9 29 29 H 1.09005 * 109.46046 * 54.14061 * 18 17 9 30 30 H 1.09006 * 109.50562 * 299.24092 * 19 18 17 31 31 H 1.09001 * 109.53915 * 179.14108 * 19 18 17 32 32 H 1.09004 * 109.52504 * 182.44298 * 20 19 18 33 33 H 1.08997 * 109.57766 * 62.28371 * 20 19 18 34 34 H 1.09003 * 109.49833 * 297.71365 * 21 20 19 35 35 H 1.08999 * 109.53550 * 177.61841 * 21 20 19 36 36 H 1.08992 * 109.46781 * 305.85630 * 22 17 9 37 37 H 1.08995 * 109.46092 * 65.83783 * 22 17 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0821 -1.1954 -0.0730 9 6 1.2546 -2.4970 0.1037 10 1 0.3069 -2.4139 -0.4280 11 6 0.9872 -2.8163 1.5760 12 6 0.1816 -4.0860 1.6763 13 6 0.5781 -5.1386 2.3980 14 16 -0.6469 -6.3954 2.2418 15 6 -1.5664 -5.3836 1.2153 16 7 -0.9685 -4.2516 1.0545 17 7 2.0579 -3.5728 -0.4925 18 6 3.3826 -3.6508 0.1362 19 6 4.1349 -4.8686 -0.4051 20 6 4.2771 -4.7406 -1.9243 21 6 2.8855 -4.6124 -2.5504 22 6 2.1695 -3.4020 -1.9467 23 1 -0.4850 -0.8363 0.0801 24 1 1.9354 -2.9455 2.0978 25 1 0.4311 -1.9963 2.0303 26 1 1.4880 -5.2065 2.9757 27 1 -2.5110 -5.6529 0.7663 28 1 3.9461 -2.7457 -0.0904 29 1 3.2671 -3.7457 1.2160 30 1 3.5788 -5.7754 -0.1668 31 1 5.1240 -4.9181 0.0501 32 1 4.7741 -5.6266 -2.3196 33 1 4.8667 -3.8554 -2.1627 34 1 2.3099 -5.5151 -2.3457 35 1 2.9815 -4.4784 -3.6278 36 1 1.1731 -3.3163 -2.3799 37 1 2.7388 -2.4982 -2.1636 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260404588.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:29 Heat of formation + Delta-G solvation = 16.878034 kcal Electronic energy + Delta-G solvation = -18935.666975 eV Core-core repulsion = 16224.333621 eV Total energy + Delta-G solvation = -2711.333355 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.88714 -39.68248 -36.27244 -33.75066 -32.35722 -31.55898 -29.47133 -27.00358 -25.58099 -25.08412 -23.77858 -22.32238 -20.65395 -20.31911 -18.70210 -18.53749 -16.97407 -16.40288 -15.86190 -15.74375 -15.66018 -15.24172 -15.13768 -14.52178 -14.34158 -14.09680 -13.89691 -13.63472 -13.25491 -13.04206 -12.76094 -12.53128 -12.24390 -12.01035 -11.99048 -11.86810 -11.58280 -11.14982 -11.02514 -10.99343 -10.54145 -10.36832 -10.25579 -9.51417 -8.86238 -8.49129 -6.32841 -0.03629 0.66235 0.89857 1.48087 1.56136 1.71493 2.06748 2.53894 3.18104 3.34613 3.54790 3.99003 4.02839 4.14487 4.31744 4.36329 4.43063 4.52233 4.61728 4.63726 4.78866 4.82302 4.85799 5.03386 5.04987 5.05907 5.11680 5.22395 5.26157 5.28925 5.41052 5.46236 5.52325 5.97660 6.11808 6.56888 6.60650 6.64812 7.04264 7.50742 8.78244 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.015011 B = 0.008383 C = 0.006107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.810356 B = 3339.251064 C = 4583.713284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.023 4.023 3 Si 1.110 2.890 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.280 1.280 7 C -0.624 4.624 8 H 0.048 0.952 9 C 0.215 3.785 10 H 0.009 0.991 11 C -0.024 4.024 12 C 0.079 3.921 13 C -0.265 4.265 14 S 0.153 5.847 15 C 0.011 3.989 16 N -0.504 5.504 17 N -0.523 5.523 18 C 0.060 3.940 19 C -0.107 4.107 20 C -0.113 4.113 21 C -0.105 4.105 22 C 0.069 3.931 23 H 0.261 0.739 24 H 0.072 0.928 25 H 0.036 0.964 26 H 0.186 0.814 27 H 0.221 0.779 28 H 0.013 0.987 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.033 0.967 37 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.262 -14.340 2.226 15.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.223 4.223 3 Si 0.934 3.066 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.663 4.663 8 H 0.066 0.934 9 C 0.106 3.894 10 H 0.027 0.973 11 C -0.065 4.065 12 C -0.051 4.051 13 C -0.404 4.404 14 S 0.404 5.596 15 C -0.287 4.287 16 N -0.219 5.219 17 N -0.246 5.246 18 C -0.068 4.068 19 C -0.145 4.145 20 C -0.151 4.151 21 C -0.143 4.143 22 C -0.060 4.060 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.055 0.945 26 H 0.203 0.797 27 H 0.237 0.763 28 H 0.031 0.969 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 3.414 -13.782 2.284 14.381 hybrid contribution 0.572 0.519 -0.223 0.804 sum 3.986 -13.263 2.061 14.002 Atomic orbital electron populations 1.70811 1.07823 1.30740 1.47718 1.27026 0.96479 1.06000 0.92831 0.83017 0.74276 0.72064 0.77275 1.19945 1.21028 1.20584 1.22806 0.94770 0.93907 1.54843 0.93382 1.19029 0.92574 0.87580 0.90177 0.97286 1.20274 0.96257 0.90525 0.99458 1.20323 0.91755 0.98003 0.95019 1.26921 1.06698 0.96849 1.09913 1.83247 1.13010 1.18816 1.44534 1.28857 1.05480 0.92090 1.02230 1.66052 1.09761 1.23022 1.23053 1.62338 1.14280 1.45070 1.02955 1.21981 0.89686 0.96756 0.98396 1.21565 0.99688 0.97364 0.95887 1.21527 0.96134 1.01903 0.95489 1.21537 0.96391 0.97094 0.99266 1.21765 0.98064 0.96787 0.89340 0.92853 0.90987 0.94548 0.79688 0.76313 0.96894 0.92040 0.91579 0.90323 0.89701 0.93133 0.91776 0.90860 0.94806 0.97122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.09 13.62 21.45 0.29 -57.79 16 2 C -0.02 -1.34 5.46 84.65 0.46 -0.88 16 3 Si 1.11 51.34 29.91 68.60 2.05 53.39 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.62 -34.58 7.05 25.60 0.18 -34.40 16 8 H 0.05 2.68 5.90 -2.91 -0.02 2.66 16 9 C 0.21 10.93 1.39 44.17 0.06 10.99 16 10 H 0.01 0.55 6.43 -2.39 -0.02 0.53 16 11 C -0.02 -1.12 5.02 29.85 0.15 -0.97 16 12 C 0.08 3.20 5.75 41.52 0.24 3.44 16 13 C -0.27 -8.38 11.07 66.78 0.74 -7.64 16 14 S 0.15 3.73 23.22 -56.49 -1.31 2.42 16 15 C 0.01 0.33 12.23 130.66 1.60 1.93 16 16 N -0.50 -20.58 10.29 -191.55 -1.97 -22.55 16 17 N -0.52 -22.67 4.27 -875.53 -3.74 -26.41 16 18 C 0.06 2.29 4.79 86.33 0.41 2.71 16 19 C -0.11 -3.11 6.09 30.65 0.19 -2.92 16 20 C -0.11 -3.10 6.00 30.68 0.18 -2.92 16 21 C -0.11 -3.30 6.09 30.65 0.19 -3.11 16 22 C 0.07 2.92 5.17 86.32 0.45 3.37 16 23 H 0.26 16.77 6.67 -92.70 -0.62 16.15 16 24 H 0.07 3.11 6.14 -2.39 -0.01 3.10 16 25 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.19 4.96 8.06 -2.91 -0.02 4.93 16 27 H 0.22 4.82 8.06 -2.91 -0.02 4.79 16 28 H 0.01 0.55 6.24 -2.39 -0.01 0.54 16 29 H 0.06 2.32 6.09 -2.38 -0.01 2.30 16 30 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.03 1.55 8.03 -2.39 -0.02 1.53 16 37 H 0.01 0.49 7.54 -2.39 -0.02 0.47 16 Total: -1.00 -68.02 304.90 1.38 -66.65 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 1.21 Total: 14.69 kcal Atomic # 6 Polarization: -35.24 SS G_CDS: 4.85 Total: -30.39 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -5.42 Total: -106.75 kcal Atomic # 14 Polarization: 51.34 SS G_CDS: 2.05 Total: 53.39 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -1.31 Total: 2.42 kcal Total: -68.02 1.38 -66.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260404588.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.526 kcal (2) G-P(sol) polarization free energy of solvation -68.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds