Wall clock time and date at job start Mon Mar 30 2020 07:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99861 * 2 1 4 4 H 1.48506 * 109.47309 * 269.99764 * 3 2 1 5 5 H 1.48496 * 109.47272 * 29.99943 * 3 2 1 6 6 H 1.48502 * 109.47143 * 150.00043 * 3 2 1 7 7 C 1.37875 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99984 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00295 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47162 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.46744 * 179.97438 * 10 9 7 12 12 C 1.37685 * 126.50134 * 100.30094 * 11 10 9 13 13 C 1.34384 * 106.95758 * 180.14059 * 12 11 10 14 14 C 1.50704 * 125.82830 * 179.88393 * 13 12 11 15 15 C 1.54892 * 110.59841 * 328.03450 * 14 13 12 16 16 C 1.54888 * 102.74611 * 156.67350 * 15 14 13 17 17 C 1.54265 * 104.19721 * 322.05788 * 16 15 14 18 18 C 1.53873 * 106.59997 * 23.61451 * 17 16 15 19 19 N 1.34360 * 108.34472 * 359.61977 * 13 12 11 20 20 C 1.31266 * 109.30840 * 0.24246 * 19 13 12 21 21 S 1.76195 * 125.80457 * 179.97438 * 20 19 13 22 22 H 0.97005 * 120.00317 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.46911 * 60.00095 * 9 7 2 24 24 H 1.08996 * 109.46846 * 299.99933 * 9 7 2 25 25 H 1.08995 * 109.47318 * 60.00113 * 10 9 7 26 26 H 1.08996 * 109.46996 * 299.99610 * 10 9 7 27 27 H 1.08003 * 126.52114 * 0.02562 * 12 11 10 28 28 H 1.09002 * 110.43639 * 205.41742 * 14 13 12 29 29 H 1.08992 * 110.75663 * 274.99212 * 15 14 13 30 30 H 1.09000 * 110.75339 * 38.36236 * 15 14 13 31 31 H 1.09007 * 110.48520 * 203.37936 * 16 15 14 32 32 H 1.08996 * 110.48377 * 80.74349 * 16 15 14 33 33 H 1.08993 * 110.03585 * 264.31946 * 17 16 15 34 34 H 1.09006 * 110.07186 * 142.91875 * 17 16 15 35 35 H 1.09002 * 110.03017 * 240.71676 * 18 17 16 36 36 H 1.08992 * 110.03600 * 119.28231 * 18 17 16 37 37 H 1.40999 * 99.99907 * 90.02580 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 7 1.5128 -4.9308 -0.0020 12 6 1.2751 -5.7388 -1.0911 13 6 0.5694 -6.7939 -0.6499 14 6 0.0792 -7.9424 -1.4935 15 6 -0.2432 -7.4640 -2.9310 16 6 -0.1254 -8.7674 -3.7594 17 6 1.0674 -9.5123 -3.1252 18 6 1.1974 -8.9879 -1.6845 19 7 0.3804 -6.6529 0.6729 20 6 0.9426 -5.5370 1.0751 21 16 0.9561 -4.9271 2.7281 22 1 -0.4851 0.8401 -0.0004 23 1 0.6248 -2.5563 -0.8919 24 1 0.6241 -2.5575 0.8880 25 1 2.8712 -3.6048 0.8890 26 1 2.8726 -3.6040 -0.8909 27 1 1.5935 -5.5581 -2.1072 28 1 -0.7985 -8.4015 -1.0384 29 1 -1.2545 -7.0612 -2.9863 30 1 0.4864 -6.7265 -3.2653 31 1 0.0805 -8.5376 -4.8049 32 1 -1.0361 -9.3596 -3.6703 33 1 1.9793 -9.3007 -3.6834 34 1 0.8762 -10.5854 -3.1161 35 1 2.1725 -8.5215 -1.5435 36 1 1.0685 -9.8061 -0.9762 37 1 2.1422 -5.5257 3.2002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260433114.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:53 Heat of formation + Delta-G solvation = 34.860629 kcal Electronic energy + Delta-G solvation = -17733.879102 eV Core-core repulsion = 15023.325531 eV Total energy + Delta-G solvation = -2710.553571 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.59143 -37.94194 -34.69849 -32.67830 -30.49165 -29.63044 -28.66309 -27.09684 -24.99392 -22.21477 -21.55742 -20.87748 -20.22765 -19.16616 -17.30109 -16.73088 -16.04153 -15.67559 -14.93421 -14.84618 -14.44124 -14.01124 -13.79374 -13.37403 -13.05402 -12.89727 -12.43855 -11.69843 -11.59611 -11.24097 -11.18955 -11.07099 -11.05440 -10.90807 -10.70156 -10.63894 -10.46041 -10.28255 -10.03325 -9.68420 -9.38117 -8.90939 -8.49417 -8.02726 -7.91473 -6.12770 -4.18481 1.56460 2.03757 2.78749 3.24786 3.30021 3.33108 3.36312 3.42377 4.35874 4.61089 4.64707 4.73219 5.06866 5.23392 5.29416 5.42123 5.48799 5.56479 5.59594 5.65507 5.73421 5.83382 5.92322 5.96562 5.99200 6.04065 6.23807 6.32753 6.40970 6.46120 6.59318 6.97397 7.26625 7.50013 7.56340 7.83662 8.16771 8.23857 8.86384 9.46514 10.98245 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022643 B = 0.004599 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.300276 B = 6086.468240 C = 6893.758047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.064 3.936 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.015 3.985 10 C 0.100 3.900 11 N -0.420 5.420 12 C -0.021 4.021 13 C -0.001 4.001 14 C -0.002 4.002 15 C -0.118 4.118 16 C -0.124 4.124 17 C -0.124 4.124 18 C -0.114 4.114 19 N -0.451 5.451 20 C 0.173 3.827 21 S -0.016 6.016 22 H 0.263 0.737 23 H 0.021 0.979 24 H 0.036 0.964 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.173 0.827 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.717 -15.205 -3.910 15.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.022 4.022 10 C -0.020 4.020 11 N -0.101 5.101 12 C -0.161 4.161 13 C -0.136 4.136 14 C -0.022 4.022 15 C -0.156 4.156 16 C -0.162 4.162 17 C -0.162 4.162 18 C -0.152 4.152 19 N -0.173 5.173 20 C -0.196 4.196 21 S 0.137 5.863 22 H 0.073 0.927 23 H 0.039 0.961 24 H 0.054 0.946 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.190 0.810 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.053 -15.009 -2.516 15.356 hybrid contribution 1.657 0.858 -1.237 2.239 sum 3.710 -14.151 -3.754 15.103 Atomic orbital electron populations 1.69968 1.06111 1.27002 1.49407 1.24970 0.94836 0.99321 0.94804 0.86532 0.79809 0.83146 0.78155 1.20598 1.21035 1.19752 1.20949 0.92938 0.90249 1.52552 0.92369 1.19446 0.93886 0.89994 0.98904 1.22517 0.96174 0.80426 1.02930 1.46669 1.38371 1.18303 1.06771 1.22676 1.06386 0.93616 0.93372 1.20508 1.04090 0.97886 0.91084 1.20159 0.97811 0.91357 0.92862 1.22592 1.02025 0.97222 0.93783 1.22345 0.98299 0.96520 0.99007 1.22138 0.98503 0.99556 0.95959 1.22178 0.98860 0.97963 0.96172 1.70692 1.19603 1.15578 1.11386 1.24004 1.06551 0.95224 0.93826 1.87111 1.34627 1.63884 1.00710 0.92678 0.96079 0.94575 0.89895 0.89895 0.80988 0.89746 0.91210 0.91111 0.91732 0.91666 0.92018 0.92108 0.91867 0.91882 0.95530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.53 -14.05 9.11 -34.44 -0.31 -14.36 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.02 0.38 5.29 -27.88 -0.15 0.23 16 10 C 0.10 1.96 5.83 -4.04 -0.02 1.93 16 11 N -0.42 -7.93 2.81 -116.93 -0.33 -8.25 16 12 C -0.02 -0.35 10.69 -16.28 -0.17 -0.53 16 13 C 0.00 -0.02 5.96 -82.84 -0.49 -0.51 16 14 C 0.00 -0.03 3.37 -90.11 -0.30 -0.33 16 15 C -0.12 -1.33 6.19 -24.74 -0.15 -1.48 16 16 C -0.12 -1.14 6.83 -25.07 -0.17 -1.31 16 17 C -0.12 -1.14 6.80 -25.61 -0.17 -1.31 16 18 C -0.11 -1.28 6.36 -25.61 -0.16 -1.44 16 19 N -0.45 -8.67 11.29 -9.68 -0.11 -8.78 16 20 C 0.17 3.35 8.23 -88.75 -0.73 2.62 16 21 S -0.02 -0.28 25.84 -107.50 -2.78 -3.06 16 22 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 23 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.08 1.55 8.06 -51.93 -0.42 1.13 16 26 H 0.08 1.48 8.12 -51.93 -0.42 1.06 16 27 H 0.17 2.39 6.99 -52.48 -0.37 2.03 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.79 6.48 -51.93 -0.34 0.45 16 31 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.76 7.83 -51.93 -0.41 0.35 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 1.17 9.55 96.90 0.93 2.09 16 LS Contribution 320.56 15.07 4.83 4.83 Total: -1.00 -29.88 320.56 -9.99 -39.86 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -4.37 Total: -0.37 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -2.95 Total: -14.83 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 0.30 Total: -42.20 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: -0.28 SS G_CDS: -2.78 Total: -3.06 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.88 -9.99 -39.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433114.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.724 kcal (2) G-P(sol) polarization free energy of solvation -29.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds