Wall clock time and date at job start Mon Mar 30 2020 07:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99861 * 2 1 4 4 H 1.48506 * 109.47309 * 269.99764 * 3 2 1 5 5 H 1.48496 * 109.47272 * 29.99943 * 3 2 1 6 6 H 1.48502 * 109.47143 * 150.00043 * 3 2 1 7 7 C 1.37875 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99984 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00295 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47162 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.46744 * 179.97438 * 10 9 7 12 12 C 1.37685 * 126.50134 * 100.30094 * 11 10 9 13 13 C 1.34384 * 106.95758 * 180.14059 * 12 11 10 14 14 C 1.50704 * 125.82830 * 179.88393 * 13 12 11 15 15 C 1.54892 * 110.59841 * 328.03450 * 14 13 12 16 16 C 1.54888 * 102.74611 * 156.67350 * 15 14 13 17 17 C 1.54265 * 104.19721 * 322.05788 * 16 15 14 18 18 C 1.53873 * 106.59997 * 23.61451 * 17 16 15 19 19 N 1.34360 * 108.34472 * 359.61977 * 13 12 11 20 20 C 1.31266 * 109.30840 * 0.24246 * 19 13 12 21 21 S 1.76195 * 125.80457 * 179.97438 * 20 19 13 22 22 H 0.97005 * 120.00317 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.46911 * 60.00095 * 9 7 2 24 24 H 1.08996 * 109.46846 * 299.99933 * 9 7 2 25 25 H 1.08995 * 109.47318 * 60.00113 * 10 9 7 26 26 H 1.08996 * 109.46996 * 299.99610 * 10 9 7 27 27 H 1.08003 * 126.52114 * 0.02562 * 12 11 10 28 28 H 1.09002 * 110.43639 * 205.41742 * 14 13 12 29 29 H 1.08992 * 110.75663 * 274.99212 * 15 14 13 30 30 H 1.09000 * 110.75339 * 38.36236 * 15 14 13 31 31 H 1.09007 * 110.48520 * 203.37936 * 16 15 14 32 32 H 1.08996 * 110.48377 * 80.74349 * 16 15 14 33 33 H 1.08993 * 110.03585 * 264.31946 * 17 16 15 34 34 H 1.09006 * 110.07186 * 142.91875 * 17 16 15 35 35 H 1.09002 * 110.03017 * 240.71676 * 18 17 16 36 36 H 1.08992 * 110.03600 * 119.28231 * 18 17 16 37 37 H 1.40999 * 99.99907 * 90.02580 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 7 1.5128 -4.9308 -0.0020 12 6 1.2751 -5.7388 -1.0911 13 6 0.5694 -6.7939 -0.6499 14 6 0.0792 -7.9424 -1.4935 15 6 -0.2432 -7.4640 -2.9310 16 6 -0.1254 -8.7674 -3.7594 17 6 1.0674 -9.5123 -3.1252 18 6 1.1974 -8.9879 -1.6845 19 7 0.3804 -6.6529 0.6729 20 6 0.9426 -5.5370 1.0751 21 16 0.9561 -4.9271 2.7281 22 1 -0.4851 0.8401 -0.0004 23 1 0.6248 -2.5563 -0.8919 24 1 0.6241 -2.5575 0.8880 25 1 2.8712 -3.6048 0.8890 26 1 2.8726 -3.6040 -0.8909 27 1 1.5935 -5.5581 -2.1072 28 1 -0.7985 -8.4015 -1.0384 29 1 -1.2545 -7.0612 -2.9863 30 1 0.4864 -6.7265 -3.2653 31 1 0.0805 -8.5376 -4.8049 32 1 -1.0361 -9.3596 -3.6703 33 1 1.9793 -9.3007 -3.6834 34 1 0.8762 -10.5854 -3.1161 35 1 2.1725 -8.5215 -1.5435 36 1 1.0685 -9.8061 -0.9762 37 1 2.1422 -5.5257 3.2002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260433114.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:53 Heat of formation + Delta-G solvation = 19.645223 kcal Electronic energy + Delta-G solvation = -17734.538892 eV Core-core repulsion = 15023.325531 eV Total energy + Delta-G solvation = -2711.213360 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.97404 -38.86972 -36.38862 -34.54626 -31.65820 -31.37336 -29.51793 -28.34185 -26.76485 -23.89079 -22.77655 -22.35077 -21.07557 -20.33945 -18.92446 -18.37880 -17.47495 -16.85024 -16.54009 -16.04188 -15.90625 -15.30031 -15.16453 -14.77943 -14.34093 -14.13458 -13.97439 -13.48575 -12.88335 -12.79792 -12.56491 -12.24415 -12.18304 -12.08960 -11.97696 -11.89118 -11.75221 -11.61670 -11.40993 -11.22870 -11.02950 -10.58740 -10.45859 -9.36131 -9.31351 -8.21658 -6.34623 0.21878 0.62768 1.43354 1.44583 1.49754 1.55425 1.91752 2.04548 2.42760 3.13657 3.51443 3.71075 3.86713 3.92817 4.08212 4.29796 4.37310 4.46965 4.62170 4.66079 4.67847 4.75121 4.79548 4.91042 5.04511 5.13537 5.17555 5.27208 5.36040 5.38831 5.48168 5.54716 5.56562 5.70287 5.71936 5.94303 6.14292 6.80534 6.85086 7.35686 8.90478 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022643 B = 0.004599 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.300276 B = 6086.468240 C = 6893.758047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.259 1.259 7 C -0.540 4.540 8 H 0.073 0.927 9 C 0.025 3.975 10 C 0.116 3.884 11 N -0.429 5.429 12 C -0.025 4.025 13 C -0.004 4.004 14 C -0.005 4.005 15 C -0.118 4.118 16 C -0.118 4.118 17 C -0.118 4.118 18 C -0.109 4.109 19 N -0.474 5.474 20 C 0.153 3.847 21 S -0.039 6.039 22 H 0.264 0.736 23 H -0.011 1.011 24 H 0.006 0.994 25 H 0.093 0.907 26 H 0.105 0.895 27 H 0.200 0.800 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.361 -15.781 -5.055 17.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.183 1.183 7 C -0.578 4.578 8 H 0.091 0.909 9 C -0.013 4.013 10 C -0.005 4.005 11 N -0.111 5.111 12 C -0.163 4.163 13 C -0.138 4.138 14 C -0.025 4.025 15 C -0.156 4.156 16 C -0.156 4.156 17 C -0.156 4.156 18 C -0.147 4.147 19 N -0.196 5.196 20 C -0.215 4.215 21 S 0.113 5.887 22 H 0.073 0.927 23 H 0.007 0.993 24 H 0.024 0.976 25 H 0.111 0.889 26 H 0.123 0.877 27 H 0.217 0.783 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.710 -15.613 -3.667 16.461 hybrid contribution 1.110 0.960 -0.854 1.698 sum 4.820 -14.653 -4.521 16.074 Atomic orbital electron populations 1.70118 1.08032 1.27933 1.50955 1.25928 0.95592 1.03372 0.94402 0.85414 0.78733 0.78246 0.78449 1.19808 1.21243 1.18256 1.21419 0.93824 0.91047 1.51503 0.90893 1.19208 0.94165 0.92023 0.95863 1.22201 0.94795 0.79047 1.04481 1.46646 1.38878 1.18239 1.07383 1.23198 1.06002 0.93135 0.93976 1.21118 1.03389 0.98814 0.90522 1.20305 0.98144 0.90776 0.93279 1.22603 1.01672 0.98478 0.92859 1.22331 0.98676 0.95208 0.99338 1.22118 0.98927 1.00266 0.94277 1.22133 0.97494 0.97241 0.97864 1.70697 1.20058 1.15920 1.12879 1.24256 1.07179 0.95616 0.94497 1.87082 1.36703 1.64388 1.00489 0.92730 0.99278 0.97598 0.88903 0.87713 0.78339 0.90516 0.91816 0.90983 0.90288 0.91002 0.91113 0.90742 0.92699 0.91909 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.42 13.29 21.45 0.28 -55.14 16 2 C 0.01 0.32 5.46 84.65 0.46 0.78 16 3 Si 0.97 42.24 29.54 68.60 2.03 44.27 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.54 -28.54 9.11 25.60 0.23 -28.31 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.03 1.27 5.29 29.85 0.16 1.42 16 10 C 0.12 4.44 5.83 86.38 0.50 4.95 16 11 N -0.43 -16.06 2.81 -523.85 -1.47 -17.53 16 12 C -0.03 -0.82 10.69 82.89 0.89 0.07 16 13 C 0.00 -0.15 5.96 41.29 0.25 0.10 16 14 C -0.01 -0.13 3.37 -10.46 -0.04 -0.17 16 15 C -0.12 -2.47 6.19 31.89 0.20 -2.28 16 16 C -0.12 -1.85 6.83 31.67 0.22 -1.64 16 17 C -0.12 -1.85 6.80 31.32 0.21 -1.63 16 18 C -0.11 -2.28 6.36 31.32 0.20 -2.08 16 19 N -0.47 -18.30 11.29 -184.52 -2.08 -20.38 16 20 C 0.15 5.96 8.23 179.69 1.48 7.43 16 21 S -0.04 -1.36 25.84 -56.49 -1.46 -2.82 16 22 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 23 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 24 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 25 H 0.09 3.37 8.06 -2.39 -0.02 3.35 16 26 H 0.10 3.54 8.12 -2.39 -0.02 3.53 16 27 H 0.20 5.17 6.99 -2.91 -0.02 5.15 16 28 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.48 6.48 -2.39 -0.02 1.46 16 31 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.05 1.24 7.83 -2.39 -0.02 1.22 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.11 3.14 9.55 73.80 0.70 3.84 16 Total: -1.00 -64.80 320.56 3.82 -60.97 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 1.76 Total: 11.99 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: 4.76 Total: -21.36 kcal Atomic # 7 Polarization: -89.78 SS G_CDS: -3.27 Total: -93.05 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 16 Polarization: -1.36 SS G_CDS: -1.46 Total: -2.82 kcal Total: -64.80 3.82 -60.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260433114.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.619 kcal (2) G-P(sol) polarization free energy of solvation -64.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds