Wall clock time and date at job start Mon Mar 30 2020 07:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47166 * 180.02562 * 9 7 2 11 11 C 1.33640 * 122.75294 * 84.70823 * 10 9 7 12 12 S 1.76193 * 107.92697 * 179.97438 * 11 10 9 13 13 C 1.70982 * 90.28249 * 0.27451 * 12 11 10 14 14 C 1.50701 * 124.91467 * 179.84491 * 13 12 11 15 15 C 1.52999 * 109.46567 * 269.99450 * 14 13 12 16 16 H 1.08998 * 109.46773 * 304.97868 * 15 14 13 17 17 C 1.53046 * 109.46087 * 185.00200 * 15 14 13 18 18 C 1.53115 * 109.27901 * 180.80629 * 17 15 14 19 19 C 1.53120 * 109.16020 * 57.65412 * 18 17 15 20 20 C 1.53034 * 109.28062 * 302.34379 * 19 18 17 21 21 N 1.46842 * 109.46375 * 64.95384 * 15 14 13 22 22 N 1.29029 * 110.16595 * 359.83927 * 13 12 11 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.08000 * 126.03419 * 0.03700 * 11 10 9 27 27 H 1.08991 * 109.47705 * 29.99335 * 14 13 12 28 28 H 1.08994 * 109.47032 * 150.00150 * 14 13 12 29 29 H 1.08993 * 109.50120 * 300.74627 * 17 15 14 30 30 H 1.09000 * 109.50133 * 60.82605 * 17 15 14 31 31 H 1.09000 * 109.52695 * 177.56106 * 18 17 15 32 32 H 1.09002 * 109.52456 * 297.68951 * 18 17 15 33 33 H 1.08995 * 109.50396 * 62.28586 * 19 18 17 34 34 H 1.09007 * 109.50487 * 182.40593 * 19 18 17 35 35 H 1.09000 * 109.46624 * 179.19531 * 20 19 18 36 36 H 1.09003 * 109.46711 * 299.16690 * 20 19 18 37 37 H 1.00903 * 110.99774 * 305.84827 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.7789 -4.1268 1.1186 12 16 3.8535 -5.4490 0.6697 13 6 3.4645 -5.2167 -0.9790 14 6 4.0259 -6.0255 -2.1199 15 6 5.3071 -5.3641 -2.6318 16 1 5.1003 -4.3269 -2.8951 17 6 5.8090 -6.1137 -3.8681 18 6 7.1018 -5.4609 -4.3649 19 6 8.1375 -5.4750 -3.2371 20 6 7.5682 -4.7440 -2.0191 21 7 6.3330 -5.4071 -1.5820 22 7 2.6207 -4.2487 -1.1048 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 2.5951 -3.7698 2.1212 27 1 4.2510 -7.0343 -1.7740 28 1 3.2942 -6.0726 -2.9264 29 1 6.0031 -7.1543 -3.6088 30 1 5.0533 -6.0689 -4.6524 31 1 7.4862 -6.0178 -5.2194 32 1 6.8995 -4.4318 -4.6619 33 1 8.3682 -6.5057 -2.9679 34 1 9.0459 -4.9733 -3.5708 35 1 8.2976 -4.7647 -1.2094 36 1 7.3505 -3.7097 -2.2852 37 1 5.9895 -5.0022 -0.7240 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260818724.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:20 Heat of formation + Delta-G solvation = 18.125354 kcal Electronic energy + Delta-G solvation = -17803.097762 eV Core-core repulsion = 15091.818495 eV Total energy + Delta-G solvation = -2711.279267 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.45530 -38.53844 -33.88741 -32.88628 -31.92622 -30.50241 -27.95771 -26.92169 -24.23311 -23.56370 -22.49494 -20.86034 -19.78506 -18.96393 -16.85240 -16.62953 -16.34170 -15.12451 -14.90003 -14.58040 -14.44523 -13.84624 -13.77100 -13.23724 -13.16768 -12.80657 -12.46797 -12.24463 -11.98724 -11.69548 -11.47898 -11.13502 -11.05113 -10.88311 -10.72396 -10.61349 -10.49805 -10.41037 -9.76489 -9.50254 -8.98851 -8.80657 -8.48563 -8.44694 -7.90912 -6.07217 -4.10438 1.32684 1.93910 2.33532 3.29916 3.33857 3.36126 3.61650 4.12556 4.41666 4.46353 4.72953 4.79963 4.90572 5.10069 5.25352 5.28433 5.35663 5.41517 5.56028 5.65194 5.77386 5.79265 5.83032 5.87689 5.97750 6.01295 6.06913 6.10554 6.30199 6.33986 6.98734 7.04355 7.33397 7.45849 7.53607 7.87700 8.25806 8.54787 8.91614 9.52342 11.03176 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019602 B = 0.005161 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.107699 B = 5423.980373 C = 6134.873993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.285 1.285 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.510 4.510 8 H 0.053 0.947 9 C 0.084 3.916 10 C 0.110 3.890 11 C -0.265 4.265 12 S 0.058 5.942 13 C 0.035 3.965 14 C -0.033 4.033 15 C 0.092 3.908 16 H 0.048 0.952 17 C -0.109 4.109 18 C -0.122 4.122 19 C -0.116 4.116 20 C 0.056 3.944 21 N -0.688 5.688 22 N -0.456 5.456 23 H 0.264 0.736 24 H 0.037 0.963 25 H 0.038 0.962 26 H 0.171 0.829 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.030 0.970 37 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.998 -13.081 -4.274 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.211 1.211 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.549 4.549 8 H 0.072 0.928 9 C 0.045 3.955 10 C -0.019 4.019 11 C -0.402 4.402 12 S 0.310 5.690 13 C -0.243 4.243 14 C -0.074 4.074 15 C -0.020 4.020 16 H 0.066 0.934 17 C -0.147 4.147 18 C -0.160 4.160 19 C -0.154 4.154 20 C -0.073 4.073 21 N -0.322 5.322 22 N -0.171 5.171 23 H 0.073 0.927 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.189 0.811 27 H 0.108 0.892 28 H 0.114 0.886 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.048 0.952 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 13.498 -14.120 -4.405 20.024 hybrid contribution -0.430 2.700 0.207 2.742 sum 13.069 -11.419 -4.198 17.855 Atomic orbital electron populations 1.69940 1.05983 1.27028 1.50224 1.24966 0.94894 0.99166 0.95107 0.86574 0.79542 0.82766 0.78669 1.21072 1.20167 1.20240 1.20917 0.92819 0.89770 1.51383 0.92825 1.17993 0.91367 0.87302 0.98882 1.21246 0.98462 0.97049 0.85148 1.26756 1.05918 1.03045 1.04478 1.83595 1.45777 1.34747 1.04874 1.26929 1.00297 0.99611 0.97507 1.20287 0.95927 0.97141 0.94087 1.21467 0.90054 0.98612 0.91836 0.93408 1.21594 0.97065 1.00039 0.96001 1.21574 0.95632 1.00941 0.97807 1.21578 0.97665 1.01316 0.94797 1.21904 0.92237 0.95460 0.97733 1.60467 1.05156 1.60190 1.06394 1.66218 1.11548 1.06826 1.32500 0.92680 0.94493 0.94346 0.81141 0.89224 0.88583 0.91002 0.91341 0.91847 0.92200 0.91195 0.91888 0.90856 0.95174 0.83533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -14.59 9.09 -34.44 -0.31 -14.91 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.08 2.25 5.39 -29.04 -0.16 2.09 16 10 C 0.11 2.53 5.93 -84.23 -0.50 2.03 16 11 C -0.26 -5.21 11.14 29.12 0.32 -4.89 16 12 S 0.06 0.92 21.75 -107.50 -2.34 -1.42 16 13 C 0.04 0.61 6.05 -13.46 -0.08 0.53 16 14 C -0.03 -0.44 5.48 -27.88 -0.15 -0.60 16 15 C 0.09 1.19 2.49 -67.72 -0.17 1.02 16 16 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 17 C -0.11 -1.12 5.37 -26.65 -0.14 -1.27 16 18 C -0.12 -1.17 6.00 -26.61 -0.16 -1.33 16 19 C -0.12 -1.10 6.09 -26.65 -0.16 -1.26 16 20 C 0.06 0.63 6.55 -3.83 -0.03 0.61 16 21 N -0.69 -8.76 6.50 -106.76 -0.69 -9.46 16 22 N -0.46 -9.86 10.53 -8.05 -0.08 -9.95 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.04 1.00 8.14 -51.92 -0.42 0.58 16 25 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.17 3.12 8.06 -52.49 -0.42 2.70 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.34 4.81 6.57 -39.29 -0.26 4.55 16 LS Contribution 314.48 15.07 4.74 4.74 Total: -1.00 -30.45 314.48 -10.02 -40.46 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.72 Total: 0.99 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -1.63 Total: -16.33 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -0.04 Total: -45.20 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.34 Total: -1.42 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.45 -10.02 -40.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260818724.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.589 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds