Wall clock time and date at job start Mon Mar 30 2020 07:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47166 * 180.02562 * 9 7 2 11 11 C 1.33640 * 122.75294 * 84.70823 * 10 9 7 12 12 S 1.76193 * 107.92697 * 179.97438 * 11 10 9 13 13 C 1.70982 * 90.28249 * 0.27451 * 12 11 10 14 14 C 1.50701 * 124.91467 * 179.84491 * 13 12 11 15 15 C 1.52999 * 109.46567 * 269.99450 * 14 13 12 16 16 H 1.08998 * 109.46773 * 304.97868 * 15 14 13 17 17 C 1.53046 * 109.46087 * 185.00200 * 15 14 13 18 18 C 1.53115 * 109.27901 * 180.80629 * 17 15 14 19 19 C 1.53120 * 109.16020 * 57.65412 * 18 17 15 20 20 C 1.53034 * 109.28062 * 302.34379 * 19 18 17 21 21 N 1.46842 * 109.46375 * 64.95384 * 15 14 13 22 22 N 1.29029 * 110.16595 * 359.83927 * 13 12 11 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.08000 * 126.03419 * 0.03700 * 11 10 9 27 27 H 1.08991 * 109.47705 * 29.99335 * 14 13 12 28 28 H 1.08994 * 109.47032 * 150.00150 * 14 13 12 29 29 H 1.08993 * 109.50120 * 300.74627 * 17 15 14 30 30 H 1.09000 * 109.50133 * 60.82605 * 17 15 14 31 31 H 1.09000 * 109.52695 * 177.56106 * 18 17 15 32 32 H 1.09002 * 109.52456 * 297.68951 * 18 17 15 33 33 H 1.08995 * 109.50396 * 62.28586 * 19 18 17 34 34 H 1.09007 * 109.50487 * 182.40593 * 19 18 17 35 35 H 1.09000 * 109.46624 * 179.19531 * 20 19 18 36 36 H 1.09003 * 109.46711 * 299.16690 * 20 19 18 37 37 H 1.00903 * 110.99774 * 305.84827 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.7789 -4.1268 1.1186 12 16 3.8535 -5.4490 0.6697 13 6 3.4645 -5.2167 -0.9790 14 6 4.0259 -6.0255 -2.1199 15 6 5.3071 -5.3641 -2.6318 16 1 5.1003 -4.3269 -2.8951 17 6 5.8090 -6.1137 -3.8681 18 6 7.1018 -5.4609 -4.3649 19 6 8.1375 -5.4750 -3.2371 20 6 7.5682 -4.7440 -2.0191 21 7 6.3330 -5.4071 -1.5820 22 7 2.6207 -4.2487 -1.1048 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 2.5951 -3.7698 2.1212 27 1 4.2510 -7.0343 -1.7740 28 1 3.2942 -6.0726 -2.9264 29 1 6.0031 -7.1543 -3.6088 30 1 5.0533 -6.0689 -4.6524 31 1 7.4862 -6.0178 -5.2194 32 1 6.8995 -4.4318 -4.6619 33 1 8.3682 -6.5057 -2.9679 34 1 9.0459 -4.9733 -3.5708 35 1 8.2976 -4.7647 -1.2094 36 1 7.3505 -3.7097 -2.2852 37 1 5.9895 -5.0022 -0.7240 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260818724.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:19 Heat of formation + Delta-G solvation = -1.673136 kcal Electronic energy + Delta-G solvation = -17803.956289 eV Core-core repulsion = 15091.818495 eV Total energy + Delta-G solvation = -2712.137794 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.88681 -39.60576 -35.56897 -34.45296 -32.83659 -32.09305 -29.58464 -28.32296 -25.93317 -24.77390 -23.69319 -22.13880 -20.79522 -20.35304 -18.63271 -18.33469 -17.57415 -16.69912 -16.20392 -16.02621 -15.57208 -15.09434 -14.85432 -14.55651 -14.29452 -14.20090 -13.96926 -13.66903 -13.50414 -13.04980 -12.95336 -12.74297 -12.61012 -12.39172 -12.02797 -11.67368 -11.66504 -11.64383 -11.44058 -11.25969 -10.66560 -10.46135 -10.24563 -9.60441 -9.38338 -8.26195 -6.39305 -0.14239 0.53918 0.82968 1.34665 1.38091 1.46342 1.97121 2.38090 3.04160 3.12082 3.22157 3.82523 3.89133 4.01584 4.12408 4.34336 4.35176 4.43295 4.47419 4.57894 4.65228 4.73488 4.84163 4.86156 4.94658 5.04237 5.11189 5.14661 5.24090 5.27714 5.33653 5.45012 5.50167 5.65180 6.03241 6.07949 6.26759 6.69015 7.00501 7.28347 8.83989 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019602 B = 0.005161 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.107699 B = 5423.980373 C = 6134.873993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.967 3.033 4 H -0.275 1.275 5 H -0.264 1.264 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.047 0.953 9 C 0.093 3.907 10 C 0.078 3.922 11 C -0.279 4.279 12 S 0.160 5.840 13 C 0.033 3.967 14 C -0.033 4.033 15 C 0.094 3.906 16 H 0.013 0.987 17 C -0.104 4.104 18 C -0.123 4.123 19 C -0.111 4.111 20 C 0.050 3.950 21 N -0.685 5.685 22 N -0.502 5.502 23 H 0.268 0.732 24 H 0.019 0.981 25 H 0.002 0.998 26 H 0.179 0.821 27 H 0.118 0.882 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.012 0.988 37 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.565 -14.460 -4.344 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.791 3.209 4 H -0.200 1.200 5 H -0.189 1.189 6 H -0.199 1.199 7 C -0.567 4.567 8 H 0.066 0.934 9 C 0.053 3.947 10 C -0.052 4.052 11 C -0.418 4.418 12 S 0.414 5.586 13 C -0.245 4.245 14 C -0.074 4.074 15 C -0.017 4.017 16 H 0.031 0.969 17 C -0.142 4.142 18 C -0.161 4.161 19 C -0.148 4.148 20 C -0.079 4.079 21 N -0.318 5.318 22 N -0.218 5.218 23 H 0.077 0.923 24 H 0.038 0.962 25 H 0.020 0.980 26 H 0.196 0.804 27 H 0.136 0.864 28 H 0.119 0.881 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.030 0.970 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 16.084 -15.525 -4.473 22.797 hybrid contribution -1.174 3.016 0.242 3.246 sum 14.910 -12.508 -4.232 19.917 Atomic orbital electron populations 1.70062 1.07590 1.28226 1.50742 1.25888 0.95809 1.02983 0.94325 0.85480 0.78362 0.78058 0.79035 1.19987 1.18860 1.19910 1.21178 0.92657 0.91137 1.51752 0.93426 1.17632 0.91756 0.89085 0.96187 1.20710 0.99765 0.97630 0.87050 1.26948 1.06313 1.04429 1.04061 1.83157 1.42442 1.30965 1.02071 1.27605 0.98624 0.98318 0.99976 1.20511 0.96049 0.97691 0.93125 1.21457 0.90094 0.97078 0.93102 0.96929 1.21593 0.97585 1.00321 0.94734 1.21604 0.95406 1.00452 0.98615 1.21568 0.97984 1.01595 0.93701 1.22047 0.91937 0.94730 0.99184 1.60582 1.05412 1.59909 1.05866 1.66133 1.14029 1.08885 1.32715 0.92318 0.96245 0.98001 0.80398 0.86420 0.88098 0.89539 0.90660 0.89798 0.93524 0.90379 0.90461 0.89633 0.96962 0.84746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.75 13.29 21.45 0.28 -56.47 16 2 C 0.01 0.51 5.46 84.66 0.46 0.97 16 3 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.53 -31.44 9.09 25.60 0.23 -31.21 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.09 5.28 5.39 29.10 0.16 5.44 16 10 C 0.08 3.73 5.93 41.52 0.25 3.97 16 11 C -0.28 -11.02 11.14 66.78 0.74 -10.28 16 12 S 0.16 4.73 21.75 -56.49 -1.23 3.50 16 13 C 0.03 1.11 6.05 88.52 0.54 1.65 16 14 C -0.03 -0.82 5.48 29.85 0.16 -0.65 16 15 C 0.09 2.32 2.49 44.94 0.11 2.43 16 16 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 17 C -0.10 -1.90 5.37 30.65 0.16 -1.74 16 18 C -0.12 -2.08 6.00 30.67 0.18 -1.89 16 19 C -0.11 -1.80 6.09 30.65 0.19 -1.62 16 20 C 0.05 1.05 6.55 86.32 0.57 1.62 16 21 N -0.68 -16.13 6.50 -491.67 -3.20 -19.33 16 22 N -0.50 -22.27 10.53 -179.40 -1.89 -24.16 16 23 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 24 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 25 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 26 H 0.18 6.53 8.06 -2.91 -0.02 6.51 16 27 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.33 8.72 6.57 -89.69 -0.59 8.14 16 Total: -1.00 -68.44 314.48 0.21 -68.23 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.46 Total: 12.34 kcal Atomic # 6 Polarization: -35.07 SS G_CDS: 3.75 Total: -31.32 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -4.80 Total: -99.96 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: 4.73 SS G_CDS: -1.23 Total: 3.50 kcal Total: -68.44 0.21 -68.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260818724.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.552 kcal (2) G-P(sol) polarization free energy of solvation -68.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds