Wall clock time and date at job start Mon Mar 30 2020 06:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47202 * 2 1 4 4 C 1.53001 * 109.47501 * 119.99695 * 2 1 3 5 5 C 1.50696 * 109.47559 * 174.46831 * 4 2 1 6 6 C 1.33074 * 122.19902 * 102.65838 * 5 4 2 7 7 S 1.75803 * 109.61641 * 180.02562 * 6 5 4 8 8 C 1.75562 * 91.05386 * 0.02562 * 7 6 5 9 9 C 1.34860 * 109.96681 * 359.95655 * 8 7 6 10 10 C 1.52356 * 121.56376 * 180.02562 * 9 8 7 11 11 H 1.09007 * 109.78869 * 257.01969 * 10 9 8 12 12 C 1.50694 * 109.75199 * 136.30770 * 10 9 8 13 13 H 1.07996 * 120.00329 * 327.20354 * 12 10 9 14 14 C 1.37885 * 119.99773 * 147.20540 * 12 10 9 15 15 N 1.31512 * 120.00122 * 6.35833 * 14 12 10 16 16 Si 1.86796 * 119.99799 * 186.36052 * 14 12 10 17 17 H 1.48502 * 109.47293 * 84.98548 * 16 14 12 18 18 H 1.48502 * 109.47390 * 324.98901 * 16 14 12 19 19 H 1.48502 * 109.47195 * 204.98730 * 16 14 12 20 20 C 1.53225 * 108.02093 * 16.67339 * 10 9 8 21 21 O 1.43024 * 109.50665 * 310.88757 * 20 10 9 22 22 C 1.43242 * 113.80721 * 71.21646 * 21 20 10 23 23 H 1.09009 * 109.47281 * 300.00206 * 1 2 3 24 24 H 1.08999 * 109.47588 * 59.99724 * 1 2 3 25 25 H 1.08996 * 109.47413 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47069 * 239.99862 * 2 1 3 27 27 H 1.08995 * 109.47656 * 65.30244 * 3 2 1 28 28 H 1.09005 * 109.47461 * 185.30506 * 3 2 1 29 29 H 1.09005 * 109.47177 * 305.30422 * 3 2 1 30 30 H 1.09002 * 109.46901 * 54.46330 * 4 2 1 31 31 H 1.09002 * 109.47114 * 294.47352 * 4 2 1 32 32 H 1.08005 * 125.18926 * 0.02562 * 6 5 4 33 33 H 0.97001 * 119.99690 * 5.64423 * 15 14 12 34 34 H 1.08996 * 109.46255 * 70.89683 * 20 10 9 35 35 H 1.09000 * 109.46440 * 190.87811 * 20 10 9 36 36 H 1.09005 * 109.70777 * 69.30244 * 22 21 20 37 37 H 1.09001 * 109.71134 * 189.93883 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5408 -0.8409 1.1827 6 6 4.3471 -0.0489 1.8851 7 16 6.0218 -0.4733 1.5592 8 6 5.5193 -1.7406 0.4531 9 6 4.1732 -1.7845 0.3840 10 6 3.4526 -2.7925 -0.5025 11 1 3.0927 -2.2990 -1.4054 12 6 2.2911 -3.3917 0.2477 13 1 2.3542 -3.5342 1.3163 14 6 1.1478 -3.7582 -0.4304 15 7 1.1158 -3.7022 -1.7439 16 14 -0.3557 -4.3341 0.5169 17 1 -1.1550 -3.1564 0.9404 18 1 0.0766 -5.0960 1.7160 19 1 -1.1839 -5.2077 -0.3527 20 6 4.4506 -3.8932 -0.8769 21 8 5.6624 -3.2985 -1.3497 22 6 6.4336 -2.6633 -0.3233 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8932 -0.5138 -0.8899 27 1 1.7563 1.9282 0.9336 28 1 3.1259 1.4440 -0.0950 29 1 1.6011 1.9830 -0.8387 30 1 1.5980 -1.7162 1.3003 31 1 1.7598 -0.1533 2.1365 32 1 4.0223 0.7349 2.5534 33 1 1.9200 -3.4823 -2.2397 34 1 4.6639 -4.5037 0.0005 35 1 4.0237 -4.5196 -1.6601 36 1 6.8483 -3.4179 0.3451 37 1 7.2414 -2.0867 -0.7741 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260888301.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:37 Heat of formation + Delta-G solvation = -38.301363 kcal Electronic energy + Delta-G solvation = -19231.938585 eV Core-core repulsion = 16485.919721 eV Total energy + Delta-G solvation = -2746.018864 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.27827 -37.00416 -34.48704 -33.70291 -30.21296 -29.81293 -26.91349 -26.52510 -24.76321 -24.21357 -22.26312 -20.34843 -19.20933 -17.98644 -16.89678 -16.28899 -15.56965 -14.76628 -14.49500 -13.96337 -13.87151 -13.76760 -13.68223 -13.19660 -12.62498 -12.32592 -11.97047 -11.72109 -11.52117 -11.41815 -11.25040 -11.06457 -10.95889 -10.68297 -10.54401 -10.22027 -10.08273 -9.94797 -9.79174 -9.50021 -9.19182 -8.84856 -8.38182 -7.80723 -7.50490 -6.48035 -4.18946 1.60775 2.22256 2.57189 3.33624 3.36931 3.45633 3.52843 4.37750 4.58195 5.20481 5.35357 5.47155 5.56160 5.63520 5.67889 5.73672 5.75958 6.04976 6.08302 6.17736 6.19212 6.28363 6.32911 6.38843 6.45332 6.52955 6.68769 6.77221 6.86323 6.94459 7.02776 7.10588 7.16628 7.29392 7.47884 7.76952 8.10592 8.29546 8.70131 9.46699 10.87464 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016545 B = 0.010073 C = 0.007299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.937163 B = 2779.044465 C = 3835.437974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C -0.144 4.144 4 C -0.070 4.070 5 C -0.050 4.050 6 C -0.231 4.231 7 S 0.037 5.963 8 C -0.254 4.254 9 C -0.043 4.043 10 C 0.060 3.940 11 H 0.059 0.941 12 C -0.581 4.581 13 H 0.054 0.946 14 C 0.032 3.968 15 N -0.899 5.899 16 Si 1.053 2.947 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.283 1.283 20 C 0.061 3.939 21 O -0.391 6.391 22 C 0.147 3.853 23 H 0.043 0.957 24 H 0.045 0.955 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.045 0.955 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.120 0.880 31 H 0.045 0.955 32 H 0.153 0.847 33 H 0.273 0.727 34 H 0.042 0.958 35 H 0.087 0.913 36 H 0.055 0.945 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.155 5.933 4.900 8.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 C -0.201 4.201 4 C -0.109 4.109 5 C -0.063 4.063 6 C -0.366 4.366 7 S 0.301 5.699 8 C -0.370 4.370 9 C -0.055 4.055 10 C 0.039 3.961 11 H 0.077 0.923 12 C -0.619 4.619 13 H 0.073 0.927 14 C -0.174 4.174 15 N -0.534 5.534 16 Si 0.881 3.119 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.209 1.209 20 C -0.015 4.015 21 O -0.310 6.310 22 C 0.068 3.932 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.138 0.862 31 H 0.064 0.936 32 H 0.171 0.829 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.105 0.895 36 H 0.073 0.927 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.070 6.026 5.045 8.850 hybrid contribution 0.310 0.116 0.192 0.382 sum 4.380 6.141 5.237 9.183 Atomic orbital electron populations 1.21789 0.95695 1.02338 1.00080 1.20866 0.95037 0.94569 0.99325 1.21885 1.00849 0.97022 1.00391 1.20808 0.89794 1.04226 0.96110 1.18792 0.97467 0.94256 0.95741 1.25079 0.94463 1.07337 1.09687 1.83496 1.08932 1.32877 1.44573 1.25387 0.98662 1.05206 1.07778 1.20128 0.91088 0.96786 0.97451 1.18642 0.92893 0.90103 0.94436 0.92322 1.21591 1.00215 1.44810 0.95318 0.92750 1.25702 1.00925 0.94296 0.96476 1.70767 1.32450 1.43727 1.06433 0.83782 0.75827 0.77150 0.75127 1.20761 1.21296 1.20875 1.23254 0.83065 0.96400 0.98747 1.87958 1.36225 1.73222 1.33583 1.20910 0.91311 0.92079 0.88905 0.93830 0.93573 0.91734 0.90587 0.93584 0.93103 0.93651 0.86217 0.93601 0.82911 0.91574 0.93979 0.89486 0.92712 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.19 37.15 0.34 -2.14 16 2 C -0.08 -1.48 2.90 -90.62 -0.26 -1.74 16 3 C -0.14 -2.31 8.86 37.16 0.33 -1.98 16 4 C -0.07 -1.35 4.33 -27.88 -0.12 -1.47 16 5 C -0.05 -0.99 4.18 -106.19 -0.44 -1.44 16 6 C -0.23 -4.05 10.43 28.94 0.30 -3.75 16 7 S 0.04 0.61 23.32 -107.50 -2.51 -1.89 16 8 C -0.25 -5.00 6.45 -35.19 -0.23 -5.23 16 9 C -0.04 -0.92 5.41 -104.77 -0.57 -1.49 16 10 C 0.06 1.42 1.90 -91.99 -0.18 1.24 16 11 H 0.06 1.53 6.09 -51.93 -0.32 1.21 16 12 C -0.58 -14.37 5.18 -34.44 -0.18 -14.55 16 13 H 0.05 1.39 7.44 -52.49 -0.39 1.00 16 14 C 0.03 0.82 5.45 -17.82 -0.10 0.72 16 15 N -0.90 -24.39 13.55 55.43 0.75 -23.64 16 16 Si 1.05 23.03 29.91 -169.99 -5.08 17.95 16 17 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 18 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 C 0.06 1.37 6.07 37.27 0.23 1.60 16 21 O -0.39 -8.25 10.78 -35.23 -0.38 -8.63 16 22 C 0.15 2.67 7.23 36.32 0.26 2.93 16 23 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 26 H 0.08 1.66 7.16 -51.93 -0.37 1.29 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.85 7.24 -51.93 -0.38 0.47 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.12 2.61 4.91 -51.93 -0.26 2.36 16 31 H 0.05 0.79 8.05 -51.93 -0.42 0.37 16 32 H 0.15 2.30 8.06 -52.48 -0.42 1.87 16 33 H 0.27 7.46 6.79 -40.82 -0.28 7.18 16 34 H 0.04 0.93 8.04 -51.93 -0.42 0.52 16 35 H 0.09 1.99 8.14 -51.93 -0.42 1.57 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 305.39 15.07 4.60 4.60 Total: -1.00 -26.05 305.39 -8.65 -34.71 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.42 Total: 4.20 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: -0.61 Total: -27.30 kcal Atomic # 7 Polarization: -24.39 SS G_CDS: 0.75 Total: -23.64 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.38 Total: -8.63 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.08 Total: 17.95 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -2.51 Total: -1.89 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.05 -8.65 -34.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260888301.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.596 kcal (2) G-P(sol) polarization free energy of solvation -26.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds