Wall clock time and date at job start Mon Mar 30 2020 06:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47202 * 2 1 4 4 C 1.53001 * 109.47501 * 119.99695 * 2 1 3 5 5 C 1.50696 * 109.47559 * 174.46831 * 4 2 1 6 6 C 1.33074 * 122.19902 * 102.65838 * 5 4 2 7 7 S 1.75803 * 109.61641 * 180.02562 * 6 5 4 8 8 C 1.75562 * 91.05386 * 0.02562 * 7 6 5 9 9 C 1.34860 * 109.96681 * 359.95655 * 8 7 6 10 10 C 1.52356 * 121.56376 * 180.02562 * 9 8 7 11 11 H 1.09007 * 109.78869 * 257.01969 * 10 9 8 12 12 C 1.50694 * 109.75199 * 136.30770 * 10 9 8 13 13 H 1.07996 * 120.00329 * 327.20354 * 12 10 9 14 14 C 1.37885 * 119.99773 * 147.20540 * 12 10 9 15 15 N 1.31512 * 120.00122 * 6.35833 * 14 12 10 16 16 Si 1.86796 * 119.99799 * 186.36052 * 14 12 10 17 17 H 1.48502 * 109.47293 * 84.98548 * 16 14 12 18 18 H 1.48502 * 109.47390 * 324.98901 * 16 14 12 19 19 H 1.48502 * 109.47195 * 204.98730 * 16 14 12 20 20 C 1.53225 * 108.02093 * 16.67339 * 10 9 8 21 21 O 1.43024 * 109.50665 * 310.88757 * 20 10 9 22 22 C 1.43242 * 113.80721 * 71.21646 * 21 20 10 23 23 H 1.09009 * 109.47281 * 300.00206 * 1 2 3 24 24 H 1.08999 * 109.47588 * 59.99724 * 1 2 3 25 25 H 1.08996 * 109.47413 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47069 * 239.99862 * 2 1 3 27 27 H 1.08995 * 109.47656 * 65.30244 * 3 2 1 28 28 H 1.09005 * 109.47461 * 185.30506 * 3 2 1 29 29 H 1.09005 * 109.47177 * 305.30422 * 3 2 1 30 30 H 1.09002 * 109.46901 * 54.46330 * 4 2 1 31 31 H 1.09002 * 109.47114 * 294.47352 * 4 2 1 32 32 H 1.08005 * 125.18926 * 0.02562 * 6 5 4 33 33 H 0.97001 * 119.99690 * 5.64423 * 15 14 12 34 34 H 1.08996 * 109.46255 * 70.89683 * 20 10 9 35 35 H 1.09000 * 109.46440 * 190.87811 * 20 10 9 36 36 H 1.09005 * 109.70777 * 69.30244 * 22 21 20 37 37 H 1.09001 * 109.71134 * 189.93883 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5408 -0.8409 1.1827 6 6 4.3471 -0.0489 1.8851 7 16 6.0218 -0.4733 1.5592 8 6 5.5193 -1.7406 0.4531 9 6 4.1732 -1.7845 0.3840 10 6 3.4526 -2.7925 -0.5025 11 1 3.0927 -2.2990 -1.4054 12 6 2.2911 -3.3917 0.2477 13 1 2.3542 -3.5342 1.3163 14 6 1.1478 -3.7582 -0.4304 15 7 1.1158 -3.7022 -1.7439 16 14 -0.3557 -4.3341 0.5169 17 1 -1.1550 -3.1564 0.9404 18 1 0.0766 -5.0960 1.7160 19 1 -1.1839 -5.2077 -0.3527 20 6 4.4506 -3.8932 -0.8769 21 8 5.6624 -3.2985 -1.3497 22 6 6.4336 -2.6633 -0.3233 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8932 -0.5138 -0.8899 27 1 1.7563 1.9282 0.9336 28 1 3.1259 1.4440 -0.0950 29 1 1.6011 1.9830 -0.8387 30 1 1.5980 -1.7162 1.3003 31 1 1.7598 -0.1533 2.1365 32 1 4.0223 0.7349 2.5534 33 1 1.9200 -3.4823 -2.2397 34 1 4.6639 -4.5037 0.0005 35 1 4.0237 -4.5196 -1.6601 36 1 6.8483 -3.4179 0.3451 37 1 7.2414 -2.0867 -0.7741 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260888301.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:37 Heat of formation + Delta-G solvation = -51.125920 kcal Electronic energy + Delta-G solvation = -19232.494700 eV Core-core repulsion = 16485.919721 eV Total energy + Delta-G solvation = -2746.574978 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.86616 -38.55444 -35.96045 -35.59549 -31.82366 -31.52008 -28.39893 -27.89818 -26.45095 -25.93256 -23.99974 -21.85205 -20.70955 -19.68197 -18.61765 -17.85857 -17.18698 -16.35323 -16.01828 -15.64382 -15.60386 -15.36947 -15.14026 -14.75373 -14.11742 -13.88114 -13.55978 -13.13036 -13.09494 -13.02124 -12.79394 -12.62464 -12.55014 -12.26627 -12.07314 -11.96266 -11.53896 -11.42960 -11.30027 -11.20117 -10.93157 -10.73216 -10.27103 -9.28056 -8.96180 -8.50138 -6.20856 0.13317 0.80220 1.12606 1.54800 1.60225 1.76890 1.90353 2.56983 2.93190 3.25939 3.89501 4.03830 4.11311 4.22743 4.24391 4.28448 4.35071 4.44106 4.58771 4.67540 4.71193 4.79315 4.84235 4.92336 5.01871 5.11458 5.16432 5.20787 5.26044 5.30551 5.41101 5.54925 5.59629 5.72985 5.86842 6.11236 6.24662 6.25914 6.66834 7.50277 8.83470 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016545 B = 0.010073 C = 0.007299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.937163 B = 2779.044465 C = 3835.437974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 C -0.134 4.134 4 C -0.066 4.066 5 C -0.077 4.077 6 C -0.223 4.223 7 S 0.112 5.888 8 C -0.271 4.271 9 C -0.078 4.078 10 C 0.063 3.937 11 H 0.021 0.979 12 C -0.568 4.568 13 H 0.044 0.956 14 C -0.005 4.005 15 N -0.928 5.928 16 Si 1.087 2.913 17 H -0.264 1.264 18 H -0.274 1.274 19 H -0.290 1.290 20 C 0.073 3.927 21 O -0.403 6.403 22 C 0.138 3.862 23 H 0.070 0.930 24 H 0.053 0.947 25 H 0.034 0.966 26 H 0.029 0.971 27 H 0.070 0.930 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.185 0.815 33 H 0.258 0.742 34 H 0.041 0.959 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.177 7.850 7.174 11.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.095 4.095 3 C -0.191 4.191 4 C -0.105 4.105 5 C -0.089 4.089 6 C -0.358 4.358 7 S 0.377 5.623 8 C -0.388 4.388 9 C -0.091 4.091 10 C 0.042 3.958 11 H 0.039 0.961 12 C -0.606 4.606 13 H 0.062 0.938 14 C -0.206 4.206 15 N -0.565 5.565 16 Si 0.910 3.090 17 H -0.189 1.189 18 H -0.199 1.199 19 H -0.216 1.216 20 C -0.004 4.004 21 O -0.322 6.322 22 C 0.060 3.940 23 H 0.089 0.911 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.202 0.798 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.113 7.953 7.334 11.966 hybrid contribution 0.158 -0.406 -0.473 0.643 sum 5.271 7.546 6.861 11.480 Atomic orbital electron populations 1.21749 0.94992 1.00959 1.01823 1.20780 0.95622 0.95921 0.97206 1.21777 1.00174 0.95078 1.02088 1.20678 0.89805 1.02839 0.97212 1.18789 0.97898 0.95229 0.96980 1.25479 0.94987 1.06797 1.08530 1.83207 1.07265 1.29905 1.41883 1.25701 0.98405 1.06295 1.08394 1.20042 0.92216 0.97910 0.98896 1.18411 0.93079 0.90830 0.93468 0.96115 1.21615 1.00702 1.43674 0.94561 0.93773 1.26719 1.03380 0.94112 0.96361 1.70868 1.31811 1.46366 1.07407 0.83351 0.73678 0.77411 0.74524 1.18910 1.19881 1.21578 1.22931 0.83676 0.95860 0.97927 1.87918 1.35700 1.73513 1.35079 1.21285 0.91227 0.92621 0.88843 0.91067 0.92778 0.94640 0.95251 0.91133 0.93959 0.92753 0.89435 0.91062 0.79826 0.93101 0.94035 0.91238 0.90842 0.86203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 9.19 71.98 0.66 -4.11 16 2 C -0.08 -2.85 2.90 -10.80 -0.03 -2.88 16 3 C -0.13 -4.03 8.86 71.98 0.64 -3.39 16 4 C -0.07 -2.50 4.33 29.85 0.13 -2.38 16 5 C -0.08 -2.96 4.18 -20.87 -0.09 -3.05 16 6 C -0.22 -7.05 10.43 66.66 0.70 -6.36 16 7 S 0.11 3.34 23.32 -56.49 -1.32 2.02 16 8 C -0.27 -10.24 6.45 25.11 0.16 -10.08 16 9 C -0.08 -3.40 5.41 -19.96 -0.11 -3.50 16 10 C 0.06 3.12 1.90 -11.68 -0.02 3.09 16 11 H 0.02 1.18 6.09 -2.38 -0.01 1.16 16 12 C -0.57 -29.21 5.18 25.60 0.13 -29.08 16 13 H 0.04 2.32 7.44 -2.91 -0.02 2.30 16 14 C -0.01 -0.28 5.45 84.66 0.46 0.19 16 15 N -0.93 -53.20 13.55 21.45 0.29 -52.90 16 16 Si 1.09 47.40 29.91 68.60 2.05 49.45 16 17 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 18 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 20 C 0.07 3.38 6.07 72.06 0.44 3.82 16 21 O -0.40 -17.16 10.78 -148.98 -1.61 -18.77 16 22 C 0.14 4.79 7.23 71.44 0.52 5.31 16 23 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 24 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.03 1.40 8.14 -2.39 -0.02 1.39 16 26 H 0.03 1.35 7.16 -2.39 -0.02 1.33 16 27 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.04 1.33 7.24 -2.38 -0.02 1.31 16 29 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.09 3.88 4.91 -2.39 -0.01 3.87 16 31 H 0.07 2.27 8.05 -2.39 -0.02 2.25 16 32 H 0.18 4.59 8.06 -2.91 -0.02 4.56 16 33 H 0.26 15.22 6.79 -92.71 -0.63 14.59 16 34 H 0.04 1.89 8.04 -2.39 -0.02 1.87 16 35 H 0.07 3.40 8.14 -2.39 -0.02 3.38 16 36 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 37 H 0.12 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -58.84 305.39 4.20 -54.64 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 1.19 Total: 17.98 kcal Atomic # 6 Polarization: -56.01 SS G_CDS: 3.59 Total: -52.43 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.29 Total: -52.90 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -1.61 Total: -18.77 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.05 Total: 49.45 kcal Atomic # 16 Polarization: 3.34 SS G_CDS: -1.32 Total: 2.02 kcal Total: -58.84 4.20 -54.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260888301.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.518 kcal (2) G-P(sol) polarization free energy of solvation -58.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds