Wall clock time and date at job start Mon Mar 30 2020 07:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47166 * 180.02562 * 9 7 2 11 11 C 1.33644 * 126.04099 * 90.02324 * 10 9 7 12 12 N 1.31782 * 114.50224 * 180.02562 * 11 10 9 13 13 C 1.29025 * 117.12340 * 0.02562 * 12 11 10 14 14 C 1.50703 * 124.91486 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.46889 * 90.02900 * 14 13 12 16 16 H 1.09000 * 109.46780 * 54.99519 * 15 14 13 17 17 C 1.53032 * 109.46484 * 174.97740 * 15 14 13 18 18 C 1.53116 * 109.28239 * 179.18969 * 17 15 14 19 19 C 1.53114 * 109.16393 * 302.34933 * 18 17 15 20 20 C 1.53040 * 109.27726 * 57.65130 * 19 18 17 21 21 N 1.46845 * 109.51365 * 300.81422 * 20 19 18 22 22 S 1.70980 * 110.16943 * 359.72565 * 13 12 11 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.08002 * 122.74565 * 359.97438 * 11 10 9 27 27 H 1.09003 * 109.46930 * 210.02394 * 14 13 12 28 28 H 1.08997 * 109.46971 * 330.02674 * 14 13 12 29 29 H 1.08997 * 109.50426 * 299.13610 * 17 15 14 30 30 H 1.09008 * 109.49965 * 59.25243 * 17 15 14 31 31 H 1.09004 * 109.52096 * 62.25539 * 18 17 15 32 32 H 1.08999 * 109.52320 * 182.37561 * 18 17 15 33 33 H 1.09003 * 109.50397 * 177.58986 * 19 18 17 34 34 H 1.08998 * 109.50368 * 297.70755 * 19 18 17 35 35 H 1.09001 * 109.46365 * 60.83886 * 20 19 18 36 36 H 1.09004 * 109.46264 * 180.80390 * 20 19 18 37 37 H 1.00896 * 111.01075 * 297.65596 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.7409 -4.2426 1.0801 12 7 3.5804 -5.2236 0.8165 13 6 3.8068 -5.4861 -0.4263 14 6 4.7320 -6.5661 -0.9252 15 6 3.9491 -7.8694 -1.0961 16 1 3.0924 -7.6959 -1.7473 17 6 4.8570 -8.9316 -1.7201 18 6 4.0755 -10.2397 -1.8706 19 6 3.5570 -10.6762 -0.4976 20 6 2.6867 -9.5634 0.0910 21 7 3.4802 -8.3341 0.2157 22 16 2.8999 -4.4360 -1.4254 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 2.4870 -3.9455 2.0869 27 1 5.1547 -6.2677 -1.8845 28 1 5.5360 -6.7169 -0.2049 29 1 5.1924 -8.5932 -2.7004 30 1 5.7209 -9.0959 -1.0759 31 1 3.2337 -10.0854 -2.5457 32 1 4.7307 -11.0109 -2.2756 33 1 2.9636 -11.5842 -0.6046 34 1 4.4004 -10.8680 0.1657 35 1 1.8360 -9.3818 -0.5659 36 1 2.3275 -9.8653 1.0749 37 1 4.2535 -8.4655 0.8503 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260925189.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:29 Heat of formation + Delta-G solvation = 15.815787 kcal Electronic energy + Delta-G solvation = -17526.455721 eV Core-core repulsion = 14815.076304 eV Total energy + Delta-G solvation = -2711.379417 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.37372 -38.49775 -33.93779 -33.03599 -31.74749 -30.80150 -28.45472 -25.95078 -23.99743 -23.28134 -22.26064 -21.50775 -20.53979 -18.44767 -17.14482 -16.37601 -15.73390 -15.16778 -15.05458 -14.70257 -14.38764 -14.18991 -13.60859 -13.41805 -12.99219 -12.48200 -12.31930 -12.14762 -11.95984 -11.78435 -11.62844 -11.35532 -11.17973 -10.89198 -10.83750 -10.78178 -10.63341 -10.23411 -9.92262 -9.59436 -8.80564 -8.46072 -8.36079 -8.27239 -7.77913 -6.09636 -4.14685 1.64278 2.17761 2.64234 3.30515 3.34297 3.37694 3.71237 4.15885 4.40524 4.47572 4.62655 4.70063 4.81177 5.04757 5.14470 5.22094 5.25337 5.32187 5.51438 5.56724 5.64136 5.70504 5.76161 5.79578 5.87939 5.99028 6.06047 6.14378 6.35147 6.45199 7.05346 7.07529 7.39929 7.42675 7.49515 7.84537 8.20282 8.58616 8.88732 9.49560 10.99855 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.047393 B = 0.003824 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.661554 B = 7321.180813 C = 7473.425089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.286 1.286 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.516 4.516 8 H 0.058 0.942 9 C 0.083 3.917 10 C -0.134 4.134 11 C -0.011 4.011 12 N -0.448 5.448 13 C 0.021 3.979 14 C -0.028 4.028 15 C 0.095 3.905 16 H 0.082 0.918 17 C -0.153 4.153 18 C -0.119 4.119 19 C -0.159 4.159 20 C 0.058 3.942 21 N -0.667 5.667 22 S 0.070 5.930 23 H 0.264 0.736 24 H 0.044 0.956 25 H 0.033 0.967 26 H 0.166 0.834 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.018 -18.849 -3.571 20.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.211 1.211 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.555 4.555 8 H 0.076 0.924 9 C 0.044 3.956 10 C -0.255 4.255 11 C -0.159 4.159 12 N -0.161 5.161 13 C -0.257 4.257 14 C -0.069 4.069 15 C -0.016 4.016 16 H 0.100 0.900 17 C -0.192 4.192 18 C -0.156 4.156 19 C -0.198 4.198 20 C -0.072 4.072 21 N -0.296 5.296 22 S 0.323 5.677 23 H 0.074 0.926 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.183 0.817 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.464 -18.502 -4.192 20.387 hybrid contribution 0.887 0.539 0.689 1.246 sum 8.352 -17.963 -3.503 20.117 Atomic orbital electron populations 1.69939 1.06040 1.27166 1.49989 1.24999 0.94918 0.99305 0.94912 0.86542 0.79521 0.82518 0.78825 1.21135 1.20057 1.20084 1.21008 0.93072 0.89567 1.51810 0.92392 1.17902 0.91320 0.87546 0.98875 1.26748 1.03974 1.02194 0.92537 1.21500 0.98896 0.95409 1.00073 1.66053 1.15793 1.15645 1.18651 1.26224 1.05024 1.02608 0.91857 1.20131 0.95428 0.90234 1.01117 1.21576 0.96755 0.92336 0.90972 0.89972 1.22305 0.98950 0.96114 1.01870 1.21537 0.99901 0.96977 0.97205 1.22291 1.00452 0.99794 0.97267 1.22008 0.96318 0.87826 1.01012 1.60530 1.27799 1.31160 1.10121 1.83749 1.41105 1.28798 1.14067 0.92610 0.93843 0.94914 0.81694 0.89884 0.89704 0.91258 0.91820 0.91848 0.92174 0.91747 0.92148 0.91128 0.90855 0.84063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.44 9.09 -34.44 -0.31 -14.75 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.08 2.15 5.51 -29.04 -0.16 1.99 16 10 C -0.13 -3.00 5.79 -35.92 -0.21 -3.21 16 11 C -0.01 -0.23 11.25 -19.18 -0.22 -0.45 16 12 N -0.45 -8.73 10.54 -11.86 -0.13 -8.86 16 13 C 0.02 0.37 6.37 -13.46 -0.09 0.28 16 14 C -0.03 -0.35 5.43 -27.88 -0.15 -0.50 16 15 C 0.10 1.06 2.41 -67.72 -0.16 0.89 16 16 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 17 C -0.15 -1.31 5.36 -26.66 -0.14 -1.45 16 18 C -0.12 -0.95 6.00 -26.61 -0.16 -1.11 16 19 C -0.16 -1.28 6.08 -26.65 -0.16 -1.44 16 20 C 0.06 0.58 6.55 -3.83 -0.03 0.55 16 21 N -0.67 -7.88 6.22 -106.76 -0.66 -8.54 16 22 S 0.07 1.32 23.18 -107.50 -2.49 -1.18 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 24 H 0.04 1.17 8.14 -51.92 -0.42 0.75 16 25 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.17 3.34 8.06 -52.49 -0.42 2.92 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.34 3.81 8.79 -39.29 -0.35 3.46 16 LS Contribution 318.12 15.07 4.79 4.79 Total: -1.00 -29.87 318.12 -10.46 -40.33 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -5.81 Total: -0.05 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -1.88 Total: -17.58 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -0.05 Total: -42.79 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.49 Total: -1.18 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.87 -10.46 -40.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260925189.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.142 kcal (2) G-P(sol) polarization free energy of solvation -29.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds