Wall clock time and date at job start Mon Mar 30 2020 07:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47166 * 180.02562 * 9 7 2 11 11 C 1.33644 * 126.04099 * 90.02324 * 10 9 7 12 12 N 1.31782 * 114.50224 * 180.02562 * 11 10 9 13 13 C 1.29025 * 117.12340 * 0.02562 * 12 11 10 14 14 C 1.50703 * 124.91486 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.46889 * 90.02900 * 14 13 12 16 16 H 1.09000 * 109.46780 * 54.99519 * 15 14 13 17 17 C 1.53032 * 109.46484 * 174.97740 * 15 14 13 18 18 C 1.53116 * 109.28239 * 179.18969 * 17 15 14 19 19 C 1.53114 * 109.16393 * 302.34933 * 18 17 15 20 20 C 1.53040 * 109.27726 * 57.65130 * 19 18 17 21 21 N 1.46845 * 109.51365 * 300.81422 * 20 19 18 22 22 S 1.70980 * 110.16943 * 359.72565 * 13 12 11 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.08002 * 122.74565 * 359.97438 * 11 10 9 27 27 H 1.09003 * 109.46930 * 210.02394 * 14 13 12 28 28 H 1.08997 * 109.46971 * 330.02674 * 14 13 12 29 29 H 1.08997 * 109.50426 * 299.13610 * 17 15 14 30 30 H 1.09008 * 109.49965 * 59.25243 * 17 15 14 31 31 H 1.09004 * 109.52096 * 62.25539 * 18 17 15 32 32 H 1.08999 * 109.52320 * 182.37561 * 18 17 15 33 33 H 1.09003 * 109.50397 * 177.58986 * 19 18 17 34 34 H 1.08998 * 109.50368 * 297.70755 * 19 18 17 35 35 H 1.09001 * 109.46365 * 60.83886 * 20 19 18 36 36 H 1.09004 * 109.46264 * 180.80390 * 20 19 18 37 37 H 1.00896 * 111.01075 * 297.65596 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.7409 -4.2426 1.0801 12 7 3.5804 -5.2236 0.8165 13 6 3.8068 -5.4861 -0.4263 14 6 4.7320 -6.5661 -0.9252 15 6 3.9491 -7.8694 -1.0961 16 1 3.0924 -7.6959 -1.7473 17 6 4.8570 -8.9316 -1.7201 18 6 4.0755 -10.2397 -1.8706 19 6 3.5570 -10.6762 -0.4976 20 6 2.6867 -9.5634 0.0910 21 7 3.4802 -8.3341 0.2157 22 16 2.8999 -4.4360 -1.4254 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 2.4870 -3.9455 2.0869 27 1 5.1547 -6.2677 -1.8845 28 1 5.5360 -6.7169 -0.2049 29 1 5.1924 -8.5932 -2.7004 30 1 5.7209 -9.0959 -1.0759 31 1 3.2337 -10.0854 -2.5457 32 1 4.7307 -11.0109 -2.2756 33 1 2.9636 -11.5842 -0.6046 34 1 4.4004 -10.8680 0.1657 35 1 1.8360 -9.3818 -0.5659 36 1 2.3275 -9.8653 1.0749 37 1 4.2535 -8.4655 0.8503 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260925189.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:29 Heat of formation + Delta-G solvation = -2.712919 kcal Electronic energy + Delta-G solvation = -17527.259186 eV Core-core repulsion = 14815.076304 eV Total energy + Delta-G solvation = -2712.182882 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.59034 -39.64643 -35.72622 -34.37736 -32.56491 -32.44864 -29.73460 -27.62620 -25.46871 -24.24020 -23.90747 -22.52718 -21.29843 -19.97611 -18.70702 -18.51129 -16.70251 -16.58468 -16.03793 -15.93493 -15.60947 -15.24812 -14.89510 -14.65006 -14.35213 -14.18694 -13.80333 -13.44462 -13.07550 -13.03923 -12.85474 -12.73716 -12.51490 -12.12246 -12.05404 -11.99536 -11.84066 -11.69636 -11.53157 -11.34524 -10.64966 -10.32720 -9.92759 -9.45741 -9.08082 -8.23973 -6.38309 0.07013 0.62061 1.05925 1.39801 1.42404 1.50776 2.11176 2.39994 3.07420 3.32006 3.36601 3.83775 3.96061 4.08543 4.16389 4.31999 4.40891 4.46448 4.52696 4.56088 4.68170 4.74649 4.88029 4.91969 4.96284 5.11465 5.15980 5.19562 5.22127 5.22465 5.41910 5.44073 5.48498 5.66712 6.07465 6.22866 6.60222 6.70953 7.02235 7.30554 8.85125 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.047393 B = 0.003824 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.661554 B = 7321.180813 C = 7473.425089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.967 3.033 4 H -0.278 1.278 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.096 3.904 10 C -0.184 4.184 11 C -0.003 4.003 12 N -0.466 5.466 13 C 0.051 3.949 14 C -0.030 4.030 15 C 0.100 3.900 16 H 0.067 0.933 17 C -0.144 4.144 18 C -0.119 4.119 19 C -0.151 4.151 20 C 0.059 3.941 21 N -0.690 5.690 22 S 0.093 5.907 23 H 0.268 0.732 24 H 0.018 0.982 25 H 0.009 0.991 26 H 0.165 0.835 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.305 -20.029 -4.366 22.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.791 3.209 4 H -0.203 1.203 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.572 4.572 8 H 0.072 0.928 9 C 0.057 3.943 10 C -0.305 4.305 11 C -0.151 4.151 12 N -0.179 5.179 13 C -0.229 4.229 14 C -0.071 4.071 15 C -0.012 4.012 16 H 0.085 0.915 17 C -0.184 4.184 18 C -0.156 4.156 19 C -0.190 4.190 20 C -0.071 4.071 21 N -0.320 5.320 22 S 0.347 5.653 23 H 0.077 0.923 24 H 0.037 0.963 25 H 0.027 0.973 26 H 0.182 0.818 27 H 0.127 0.873 28 H 0.117 0.883 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 9.747 -19.688 -4.995 22.529 hybrid contribution 0.197 0.768 0.923 1.217 sum 9.945 -18.920 -4.072 21.759 Atomic orbital electron populations 1.70058 1.07616 1.28278 1.50659 1.25903 0.95790 1.03046 0.94245 0.85470 0.78322 0.77929 0.79195 1.20333 1.19337 1.19166 1.21297 0.93036 0.90926 1.51930 0.92793 1.17503 0.91502 0.88816 0.96526 1.26344 1.05844 1.03243 0.95067 1.21592 0.98365 0.95228 0.99910 1.66160 1.16432 1.15735 1.19599 1.27191 1.03130 1.01595 0.90938 1.20455 0.94892 0.89231 1.02564 1.21491 0.96591 0.92367 0.90732 0.91468 1.22219 0.98522 0.95257 1.02379 1.21551 0.99966 0.97107 0.96998 1.22206 1.00306 0.99214 0.97314 1.21981 0.96129 0.88004 1.00962 1.60521 1.28334 1.32443 1.10706 1.83551 1.40867 1.28407 1.12467 0.92322 0.96343 0.97308 0.81822 0.87330 0.88254 0.90058 0.90872 0.92346 0.90746 0.90873 0.91581 0.92348 0.90880 0.83665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.51 13.29 21.45 0.28 -55.23 16 2 C 0.01 0.52 5.46 84.66 0.46 0.98 16 3 Si 0.97 44.20 29.54 68.60 2.03 46.22 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.53 -30.65 9.09 25.60 0.23 -30.42 16 8 H 0.05 3.07 7.74 -2.91 -0.02 3.04 16 9 C 0.10 5.21 5.51 29.10 0.16 5.37 16 10 C -0.18 -8.48 5.79 24.64 0.14 -8.34 16 11 C 0.00 -0.11 11.25 83.66 0.94 0.83 16 12 N -0.47 -17.78 10.54 -191.44 -2.02 -19.80 16 13 C 0.05 1.66 6.37 88.52 0.56 2.22 16 14 C -0.03 -0.66 5.43 29.85 0.16 -0.50 16 15 C 0.10 1.98 2.41 44.93 0.11 2.09 16 16 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 17 C -0.14 -1.98 5.36 30.64 0.16 -1.82 16 18 C -0.12 -1.56 6.00 30.67 0.18 -1.37 16 19 C -0.15 -2.06 6.08 30.65 0.19 -1.88 16 20 C 0.06 1.09 6.55 86.33 0.57 1.66 16 21 N -0.69 -15.16 6.22 -491.68 -3.06 -18.22 16 22 S 0.09 3.46 23.18 -56.49 -1.31 2.15 16 23 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 24 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 25 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.16 6.86 8.06 -2.91 -0.02 6.83 16 27 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.34 7.00 8.79 -89.70 -0.79 6.21 16 Total: -1.00 -65.06 318.12 0.06 -64.99 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.26 Total: 11.07 kcal Atomic # 6 Polarization: -35.06 SS G_CDS: 3.87 Total: -31.18 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -4.79 Total: -93.25 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -1.31 Total: 2.15 kcal Total: -65.06 0.06 -64.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260925189.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.280 kcal (2) G-P(sol) polarization free energy of solvation -65.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds