Wall clock time and date at job start Mon Mar 30 2020 07:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.33634 * 126.03881 * 89.69077 * 10 9 7 12 12 N 1.31788 * 114.50159 * 179.78451 * 11 10 9 13 13 C 1.29027 * 117.12025 * 0.52272 * 12 11 10 14 14 C 1.50699 * 124.91431 * 179.74872 * 13 12 11 15 15 C 1.53000 * 109.46881 * 89.96015 * 14 13 12 16 16 H 1.09001 * 109.50568 * 55.00192 * 15 14 13 17 17 C 1.53122 * 109.50209 * 175.07777 * 15 14 13 18 18 C 1.53120 * 109.16298 * 177.59195 * 17 15 14 19 19 C 1.53031 * 109.27871 * 302.35028 * 18 17 15 20 20 N 1.46848 * 109.52552 * 59.17682 * 19 18 17 21 21 C 1.46849 * 111.22905 * 298.27613 * 20 19 18 22 22 S 1.70980 * 110.16849 * 359.71396 * 13 12 11 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.07994 * 122.75153 * 359.97438 * 11 10 9 27 27 H 1.09006 * 109.46782 * 209.95357 * 14 13 12 28 28 H 1.08991 * 109.47209 * 329.95837 * 14 13 12 29 29 H 1.09004 * 109.52566 * 297.49677 * 17 15 14 30 30 H 1.08998 * 109.52224 * 57.68814 * 17 15 14 31 31 H 1.09008 * 109.50123 * 62.28722 * 18 17 15 32 32 H 1.08998 * 109.50636 * 182.36527 * 18 17 15 33 33 H 1.08999 * 109.46298 * 179.19283 * 19 18 17 34 34 H 1.08997 * 109.46226 * 299.16661 * 19 18 17 35 35 H 1.00904 * 111.00053 * 174.16443 * 20 19 18 36 36 H 1.09004 * 109.43167 * 301.68531 * 21 20 19 37 37 H 1.09001 * 109.49412 * 181.71965 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0138 -2.6149 0.0107 11 6 4.2749 -3.3603 -1.0673 12 7 4.7097 -4.5752 -0.7995 13 6 4.8201 -4.8996 0.4444 14 6 5.2927 -6.2390 0.9479 15 6 6.8125 -6.2109 1.1223 16 1 7.0890 -5.3805 1.7720 17 6 7.2796 -7.5277 1.7489 18 6 8.8063 -7.5156 1.8644 19 6 9.4164 -7.3033 0.4771 20 7 8.9396 -6.0306 -0.0792 21 6 7.4803 -6.0355 -0.2434 22 16 4.3534 -3.5894 1.4389 23 1 -0.4849 0.8400 0.0004 24 1 3.8786 -0.6821 -0.8838 25 1 3.8711 -0.6785 0.8962 26 1 4.1434 -2.9959 -2.0754 27 1 4.8209 -6.4538 1.9068 28 1 5.0237 -7.0129 0.2291 29 1 6.8401 -7.6353 2.7406 30 1 6.9685 -8.3612 1.1192 31 1 9.1149 -6.7056 2.5254 32 1 9.1481 -8.4674 2.2711 33 1 10.5031 -7.2799 0.5579 34 1 9.1186 -8.1207 -0.1795 35 1 9.4009 -5.8220 -0.9520 36 1 7.1918 -6.8586 -0.8973 37 1 7.1608 -5.0917 -0.6854 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260943150.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:34 Heat of formation + Delta-G solvation = 20.217706 kcal Electronic energy + Delta-G solvation = -17552.476739 eV Core-core repulsion = 14841.288204 eV Total energy + Delta-G solvation = -2711.188536 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.45758 -38.48767 -34.23963 -33.23628 -31.88620 -31.05298 -28.41109 -26.18876 -23.89673 -23.77386 -22.10015 -21.61282 -19.76247 -18.58618 -17.28775 -16.90218 -16.64454 -15.00435 -14.78730 -14.65549 -14.25535 -14.08685 -13.91780 -13.45605 -13.15668 -13.03142 -12.53131 -12.47536 -12.19146 -11.91378 -11.83013 -11.17663 -10.96127 -10.82727 -10.77485 -10.49972 -10.39893 -10.37758 -10.15491 -9.53855 -9.02788 -8.67017 -8.58269 -8.52850 -7.96496 -6.16112 -4.17314 1.41121 1.97609 2.44348 3.23203 3.31372 3.32792 3.46864 4.06544 4.33198 4.43111 4.66698 4.71975 4.88403 4.99308 5.16145 5.20969 5.30350 5.44297 5.52545 5.57302 5.64312 5.66321 5.76892 5.84673 5.95119 5.98357 6.03881 6.17481 6.20461 6.31317 6.77747 6.87753 6.91025 7.04578 7.23336 7.53117 8.32098 8.38523 8.87211 9.42168 10.96530 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.042499 B = 0.003972 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.687427 B = 7048.150793 C = 7217.264880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.876 3.124 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.075 0.925 9 C 0.050 3.950 10 C -0.134 4.134 11 C -0.005 4.005 12 N -0.464 5.464 13 C 0.010 3.990 14 C -0.031 4.031 15 C -0.078 4.078 16 H 0.081 0.919 17 C -0.116 4.116 18 C -0.117 4.117 19 C 0.057 3.943 20 N -0.692 5.692 21 C 0.066 3.934 22 S 0.099 5.901 23 H 0.266 0.734 24 H 0.039 0.961 25 H 0.033 0.967 26 H 0.170 0.830 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.027 0.973 35 H 0.342 0.658 36 H 0.030 0.970 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.666 -13.629 2.924 21.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.093 0.907 9 C 0.010 3.990 10 C -0.255 4.255 11 C -0.153 4.153 12 N -0.179 5.179 13 C -0.268 4.268 14 C -0.072 4.072 15 C -0.098 4.098 16 H 0.099 0.901 17 C -0.154 4.154 18 C -0.155 4.155 19 C -0.073 4.073 20 N -0.323 5.323 21 C -0.063 4.063 22 S 0.353 5.647 23 H 0.076 0.924 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.187 0.813 27 H 0.101 0.899 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.159 0.841 36 H 0.048 0.952 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 16.561 -13.454 4.184 21.744 hybrid contribution -0.067 0.692 -1.767 1.899 sum 16.494 -12.763 2.417 20.995 Atomic orbital electron populations 1.69886 1.06249 1.27180 1.49950 1.24963 0.94769 0.99000 0.94229 0.86825 0.80422 0.83616 0.78830 1.19925 1.20995 1.18869 1.20890 0.87726 0.94911 1.52235 0.90697 1.18347 0.97511 0.85147 0.98000 1.26355 1.02597 1.03438 0.93151 1.21511 1.04849 0.88743 1.00241 1.66154 1.15321 1.17818 1.18576 1.26545 1.06883 1.01341 0.92029 1.20158 0.94978 0.90735 1.01325 1.21167 0.92904 0.98484 0.97247 0.90101 1.21636 0.95735 0.97087 1.00928 1.21573 0.95381 1.01659 0.96890 1.21915 0.99294 0.90234 0.95835 1.60245 1.06210 1.32994 1.32899 1.21960 0.86533 1.01795 0.96040 1.83817 1.61050 1.06814 1.13064 0.92391 0.94329 0.94932 0.81340 0.89880 0.89583 0.91514 0.92096 0.91104 0.91705 0.91129 0.95477 0.84057 0.95150 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.02 13.96 55.43 0.77 -26.25 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 20.87 27.47 -169.99 -4.67 16.20 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 7 C -0.52 -14.52 9.65 -34.44 -0.33 -14.86 16 8 H 0.07 2.31 7.98 -52.49 -0.42 1.89 16 9 C 0.05 1.17 4.58 -29.03 -0.13 1.04 16 10 C -0.13 -2.84 5.79 -35.92 -0.21 -3.05 16 11 C -0.01 -0.11 11.25 -19.18 -0.22 -0.32 16 12 N -0.46 -8.56 9.81 -11.86 -0.12 -8.68 16 13 C 0.01 0.16 5.89 -13.46 -0.08 0.08 16 14 C -0.03 -0.38 5.27 -27.88 -0.15 -0.53 16 15 C -0.08 -0.88 2.34 -90.54 -0.21 -1.09 16 16 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 17 C -0.12 -1.05 5.29 -26.61 -0.14 -1.19 16 18 C -0.12 -1.00 6.09 -26.65 -0.16 -1.16 16 19 C 0.06 0.50 6.55 -3.84 -0.03 0.48 16 20 N -0.69 -7.39 6.84 -113.82 -0.78 -8.17 16 21 C 0.07 0.79 5.62 -3.84 -0.02 0.77 16 22 S 0.10 1.78 23.18 -107.50 -2.49 -0.71 16 23 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.04 0.88 7.58 -51.93 -0.39 0.48 16 25 H 0.03 0.76 7.19 -51.93 -0.37 0.39 16 26 H 0.17 3.15 8.06 -52.49 -0.42 2.72 16 27 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.34 3.20 8.90 -39.29 -0.35 2.85 16 36 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 1.20 6.86 -51.93 -0.36 0.84 16 LS Contribution 312.09 15.07 4.70 4.70 Total: -1.00 -30.26 312.09 -10.06 -40.33 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.71 Total: 0.45 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -1.77 Total: -17.86 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: -0.12 Total: -43.10 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.49 Total: -0.71 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.26 -10.06 -40.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260943150.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.543 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds