Wall clock time and date at job start Mon Mar 30 2020 07:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.33634 * 126.03881 * 89.69077 * 10 9 7 12 12 N 1.31788 * 114.50159 * 179.78451 * 11 10 9 13 13 C 1.29027 * 117.12025 * 0.52272 * 12 11 10 14 14 C 1.50699 * 124.91431 * 179.74872 * 13 12 11 15 15 C 1.53000 * 109.46881 * 89.96015 * 14 13 12 16 16 H 1.09001 * 109.50568 * 55.00192 * 15 14 13 17 17 C 1.53122 * 109.50209 * 175.07777 * 15 14 13 18 18 C 1.53120 * 109.16298 * 177.59195 * 17 15 14 19 19 C 1.53031 * 109.27871 * 302.35028 * 18 17 15 20 20 N 1.46848 * 109.52552 * 59.17682 * 19 18 17 21 21 C 1.46849 * 111.22905 * 298.27613 * 20 19 18 22 22 S 1.70980 * 110.16849 * 359.71396 * 13 12 11 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.07994 * 122.75153 * 359.97438 * 11 10 9 27 27 H 1.09006 * 109.46782 * 209.95357 * 14 13 12 28 28 H 1.08991 * 109.47209 * 329.95837 * 14 13 12 29 29 H 1.09004 * 109.52566 * 297.49677 * 17 15 14 30 30 H 1.08998 * 109.52224 * 57.68814 * 17 15 14 31 31 H 1.09008 * 109.50123 * 62.28722 * 18 17 15 32 32 H 1.08998 * 109.50636 * 182.36527 * 18 17 15 33 33 H 1.08999 * 109.46298 * 179.19283 * 19 18 17 34 34 H 1.08997 * 109.46226 * 299.16661 * 19 18 17 35 35 H 1.00904 * 111.00053 * 174.16443 * 20 19 18 36 36 H 1.09004 * 109.43167 * 301.68531 * 21 20 19 37 37 H 1.09001 * 109.49412 * 181.71965 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0138 -2.6149 0.0107 11 6 4.2749 -3.3603 -1.0673 12 7 4.7097 -4.5752 -0.7995 13 6 4.8201 -4.8996 0.4444 14 6 5.2927 -6.2390 0.9479 15 6 6.8125 -6.2109 1.1223 16 1 7.0890 -5.3805 1.7720 17 6 7.2796 -7.5277 1.7489 18 6 8.8063 -7.5156 1.8644 19 6 9.4164 -7.3033 0.4771 20 7 8.9396 -6.0306 -0.0792 21 6 7.4803 -6.0355 -0.2434 22 16 4.3534 -3.5894 1.4389 23 1 -0.4849 0.8400 0.0004 24 1 3.8786 -0.6821 -0.8838 25 1 3.8711 -0.6785 0.8962 26 1 4.1434 -2.9959 -2.0754 27 1 4.8209 -6.4538 1.9068 28 1 5.0237 -7.0129 0.2291 29 1 6.8401 -7.6353 2.7406 30 1 6.9685 -8.3612 1.1192 31 1 9.1149 -6.7056 2.5254 32 1 9.1481 -8.4674 2.2711 33 1 10.5031 -7.2799 0.5579 34 1 9.1186 -8.1207 -0.1795 35 1 9.4009 -5.8220 -0.9520 36 1 7.1918 -6.8586 -0.8973 37 1 7.1608 -5.0917 -0.6854 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260943150.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:33 Heat of formation + Delta-G solvation = 0.298375 kcal Electronic energy + Delta-G solvation = -17553.340506 eV Core-core repulsion = 14841.288204 eV Total energy + Delta-G solvation = -2712.052303 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.74868 -39.49603 -35.78068 -34.72564 -33.12209 -32.39375 -29.72583 -27.71555 -25.27738 -24.62578 -23.77464 -22.66437 -20.60213 -20.03488 -19.04790 -18.74194 -17.48194 -16.58608 -15.95460 -15.84216 -15.49161 -15.31558 -14.87770 -14.73744 -14.70087 -14.22725 -13.92484 -13.85918 -13.36850 -13.28121 -12.95341 -12.70585 -12.38625 -12.10142 -11.97707 -11.89720 -11.70841 -11.62362 -11.40728 -11.20707 -10.83123 -10.47515 -10.01961 -9.51643 -9.38746 -8.34018 -6.41312 -0.07376 0.51423 0.95066 1.36542 1.38034 1.49357 1.96511 2.32288 3.00389 3.20626 3.30288 3.82073 3.93532 3.99334 4.19103 4.32099 4.35276 4.41455 4.48659 4.53595 4.67330 4.74443 4.77897 4.86666 4.90994 4.94584 5.03912 5.10847 5.21555 5.23704 5.33619 5.37917 5.47499 5.50901 6.10686 6.17539 6.47042 6.63229 6.85653 7.22353 8.82425 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.042499 B = 0.003972 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.687427 B = 7048.150793 C = 7217.264880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.012 3.988 3 Si 0.950 3.050 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.244 1.244 7 C -0.526 4.526 8 H 0.027 0.973 9 C 0.058 3.942 10 C -0.183 4.183 11 C 0.000 4.000 12 N -0.481 5.481 13 C 0.034 3.966 14 C -0.032 4.032 15 C -0.072 4.072 16 H 0.068 0.932 17 C -0.112 4.112 18 C -0.117 4.117 19 C 0.054 3.946 20 N -0.702 5.702 21 C 0.070 3.930 22 S 0.114 5.886 23 H 0.270 0.730 24 H 0.048 0.952 25 H 0.036 0.964 26 H 0.173 0.827 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.031 0.969 35 H 0.347 0.653 36 H 0.030 0.970 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.927 -14.548 3.686 24.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.185 4.185 3 Si 0.772 3.228 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.168 1.168 7 C -0.564 4.564 8 H 0.046 0.954 9 C 0.019 3.981 10 C -0.304 4.304 11 C -0.148 4.148 12 N -0.196 5.196 13 C -0.244 4.244 14 C -0.073 4.073 15 C -0.093 4.093 16 H 0.086 0.914 17 C -0.150 4.150 18 C -0.154 4.154 19 C -0.075 4.075 20 N -0.334 5.334 21 C -0.060 4.060 22 S 0.369 5.631 23 H 0.079 0.921 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.190 0.810 27 H 0.124 0.876 28 H 0.115 0.885 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.050 0.950 35 H 0.165 0.835 36 H 0.048 0.952 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 18.840 -14.383 4.950 24.214 hybrid contribution -0.756 0.787 -1.997 2.276 sum 18.085 -13.596 2.952 22.817 Atomic orbital electron populations 1.70044 1.08340 1.28499 1.51595 1.25953 0.95619 1.03361 0.93616 0.85669 0.79554 0.77986 0.79595 1.18693 1.20646 1.16760 1.21085 0.90301 0.93190 1.51861 0.95441 1.18108 0.94362 0.87246 0.98422 1.26159 1.05775 1.03270 0.95159 1.21686 1.03663 0.89133 1.00367 1.66246 1.16686 1.17217 1.19414 1.27376 1.03671 1.02107 0.91260 1.20431 0.96003 0.88372 1.02520 1.21116 0.91716 0.99670 0.96758 0.91350 1.21629 0.96248 0.95566 1.01548 1.21597 0.94869 1.02489 0.96494 1.22017 1.00102 0.89349 0.96012 1.60254 1.05363 1.34374 1.33406 1.21829 0.87669 1.00192 0.96267 1.83651 1.60768 1.06776 1.11946 0.92134 0.93412 0.94532 0.80977 0.87616 0.88536 0.90140 0.91290 0.91930 0.89594 0.89864 0.95028 0.83492 0.95223 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.73 13.96 21.45 0.30 -58.44 16 2 C 0.01 0.72 5.47 84.66 0.46 1.18 16 3 Si 0.95 42.93 27.47 68.60 1.88 44.82 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.24 -10.18 6.54 99.48 0.65 -9.53 16 7 C -0.53 -30.31 9.65 25.60 0.25 -30.06 16 8 H 0.03 1.78 7.98 -2.91 -0.02 1.76 16 9 C 0.06 2.75 4.58 29.10 0.13 2.89 16 10 C -0.18 -7.78 5.79 24.64 0.14 -7.63 16 11 C 0.00 0.00 11.25 83.65 0.94 0.94 16 12 N -0.48 -17.53 9.81 -191.45 -1.88 -19.41 16 13 C 0.03 1.08 5.89 88.52 0.52 1.60 16 14 C -0.03 -0.72 5.27 29.85 0.16 -0.56 16 15 C -0.07 -1.48 2.34 -10.74 -0.03 -1.51 16 16 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 17 C -0.11 -1.67 5.29 30.68 0.16 -1.51 16 18 C -0.12 -1.63 6.09 30.64 0.19 -1.44 16 19 C 0.05 0.82 6.55 86.32 0.57 1.38 16 20 N -0.70 -13.88 6.84 -514.02 -3.52 -17.40 16 21 C 0.07 1.59 5.62 86.32 0.49 2.08 16 22 S 0.11 4.04 23.18 -56.49 -1.31 2.73 16 23 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 24 H 0.05 2.14 7.58 -2.38 -0.02 2.12 16 25 H 0.04 1.68 7.19 -2.39 -0.02 1.66 16 26 H 0.17 6.53 8.06 -2.91 -0.02 6.51 16 27 H 0.11 1.96 8.14 -2.38 -0.02 1.94 16 28 H 0.10 2.06 8.14 -2.39 -0.02 2.05 16 29 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.35 6.08 8.90 -89.69 -0.80 5.28 16 36 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 37 H 0.05 1.55 6.86 -2.39 -0.02 1.53 16 Total: -1.00 -66.85 312.09 -0.34 -67.19 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.20 Total: 13.15 kcal Atomic # 6 Polarization: -36.63 SS G_CDS: 3.98 Total: -32.65 kcal Atomic # 7 Polarization: -90.15 SS G_CDS: -5.10 Total: -95.25 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.88 Total: 44.82 kcal Atomic # 16 Polarization: 4.04 SS G_CDS: -1.31 Total: 2.73 kcal Total: -66.85 -0.34 -67.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260943150.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.490 kcal (2) G-P(sol) polarization free energy of solvation -66.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds