Wall clock time and date at job start Mon Mar 30 2020 07:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99913 * 2 1 4 4 H 1.48504 * 109.47043 * 269.99834 * 3 2 1 5 5 H 1.48491 * 109.47398 * 30.00294 * 3 2 1 6 6 H 1.48507 * 109.46851 * 150.00271 * 3 2 1 7 7 C 1.37880 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00007 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99865 * 179.97438 * 7 2 1 10 10 C 1.50701 * 109.47273 * 180.02562 * 9 7 2 11 11 C 1.33635 * 122.74980 * 85.02148 * 10 9 7 12 12 S 1.76204 * 107.92257 * 179.76202 * 11 10 9 13 13 C 1.70973 * 90.27977 * 0.28281 * 12 11 10 14 14 C 1.50713 * 124.91339 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47002 * 269.69899 * 14 13 12 16 16 C 1.53118 * 109.52058 * 175.00157 * 15 14 13 17 17 C 1.53034 * 109.28068 * 177.61953 * 16 15 14 18 18 N 1.46848 * 109.52504 * 300.82023 * 17 16 15 19 19 C 1.46847 * 111.19556 * 61.74015 * 18 17 16 20 20 C 1.53044 * 109.52516 * 298.25761 * 19 18 17 21 21 N 1.29024 * 110.17290 * 359.71346 * 13 12 11 22 22 H 0.96997 * 119.99761 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47472 * 59.99702 * 9 7 2 24 24 H 1.09008 * 109.47004 * 300.00099 * 9 7 2 25 25 H 1.07998 * 126.04381 * 359.97438 * 11 10 9 26 26 H 1.08999 * 109.46747 * 149.69365 * 14 13 12 27 27 H 1.09000 * 109.46818 * 29.70190 * 14 13 12 28 28 H 1.08992 * 109.52438 * 54.87385 * 15 14 13 29 29 H 1.09001 * 109.50624 * 57.67975 * 16 15 14 30 30 H 1.08998 * 109.50047 * 297.56432 * 16 15 14 31 31 H 1.09000 * 109.46341 * 180.80474 * 17 16 15 32 32 H 1.08999 * 109.46274 * 60.83372 * 17 16 15 33 33 H 1.00901 * 111.00066 * 185.83397 * 18 17 16 34 34 H 1.08999 * 109.46628 * 58.27319 * 19 18 17 35 35 H 1.09003 * 109.46158 * 178.24166 * 19 18 17 36 36 H 1.08996 * 109.50067 * 299.23984 * 20 19 18 37 37 H 1.08999 * 109.53710 * 179.14269 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0139 -2.6149 -0.0023 11 6 4.1625 -3.3282 -1.1225 12 16 4.7739 -4.9191 -0.6752 13 6 4.7610 -4.4696 0.9743 14 6 5.1828 -5.3603 2.1145 15 6 3.9710 -6.1413 2.6268 16 6 4.4203 -7.1367 3.7000 17 6 3.1966 -7.8726 4.2506 18 7 2.2556 -6.9009 4.8221 19 6 1.7739 -5.9636 3.7994 20 6 2.9551 -5.1706 3.2353 21 7 4.3430 -3.2555 1.1014 22 1 -0.4849 0.8400 0.0004 23 1 3.8752 -0.6804 0.8888 24 1 3.8745 -0.6800 -0.8912 25 1 3.9491 -2.9885 -2.1252 26 1 5.5894 -4.7501 2.9210 27 1 5.9447 -6.0583 1.7675 28 1 3.5093 -6.6808 1.8000 29 1 4.9168 -6.6005 4.5088 30 1 5.1114 -7.8568 3.2620 31 1 3.5115 -8.5720 5.0251 32 1 2.7086 -8.4197 3.4441 33 1 1.4850 -7.3678 5.2763 34 1 1.2925 -6.5197 2.9949 35 1 1.0553 -5.2764 4.2462 36 1 3.4285 -4.6035 4.0368 37 1 2.5999 -4.4856 2.4655 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260950976.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:17 Heat of formation + Delta-G solvation = 23.627360 kcal Electronic energy + Delta-G solvation = -17893.745249 eV Core-core repulsion = 15182.704567 eV Total energy + Delta-G solvation = -2711.040682 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.51282 -38.48262 -34.32954 -32.96323 -31.04437 -30.64250 -28.54155 -27.19248 -24.07185 -22.93479 -22.62602 -20.84565 -19.72088 -18.94000 -16.94669 -16.78517 -16.63478 -15.03134 -14.64369 -14.47476 -14.37182 -14.07694 -13.71233 -13.48462 -13.00891 -12.65333 -12.49762 -12.33889 -12.04486 -11.79598 -11.62257 -11.24372 -11.14916 -10.74776 -10.63127 -10.36903 -10.26099 -10.13440 -9.98451 -9.40955 -9.02524 -8.82737 -8.58609 -8.50782 -7.94811 -6.07906 -4.06846 1.30982 1.90921 2.28927 3.28862 3.37056 3.40977 3.56027 4.18278 4.41485 4.44236 4.76601 4.82115 4.94712 5.22598 5.25128 5.32191 5.42307 5.54462 5.59547 5.63394 5.73866 5.80500 5.91575 5.96071 6.00208 6.06519 6.19578 6.25434 6.41836 6.60489 6.79383 7.00322 7.05765 7.16113 7.31263 7.65710 8.45923 8.49219 8.95175 9.51469 11.05099 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019894 B = 0.005469 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.134546 B = 5119.000536 C = 6058.375819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.510 4.510 8 H 0.072 0.928 9 C 0.051 3.949 10 C 0.116 3.884 11 C -0.259 4.259 12 S 0.049 5.951 13 C 0.048 3.952 14 C -0.033 4.033 15 C -0.081 4.081 16 C -0.110 4.110 17 C 0.059 3.941 18 N -0.691 5.691 19 C 0.057 3.943 20 C -0.111 4.111 21 N -0.455 5.455 22 H 0.264 0.736 23 H 0.038 0.962 24 H 0.030 0.970 25 H 0.172 0.828 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.027 0.973 33 H 0.339 0.661 34 H 0.028 0.972 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.442 -15.030 4.797 18.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.548 4.548 8 H 0.090 0.910 9 C 0.011 3.989 10 C -0.013 4.013 11 C -0.396 4.396 12 S 0.302 5.698 13 C -0.231 4.231 14 C -0.074 4.074 15 C -0.101 4.101 16 C -0.148 4.148 17 C -0.071 4.071 18 N -0.322 5.322 19 C -0.072 4.072 20 C -0.149 4.149 21 N -0.169 5.169 22 H 0.074 0.926 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.189 0.811 26 H 0.110 0.890 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.156 0.844 34 H 0.046 0.954 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.029 -15.144 4.973 18.832 hybrid contribution -0.767 1.181 -0.703 1.574 sum 9.262 -13.963 4.270 17.291 Atomic orbital electron populations 1.69892 1.06236 1.27000 1.50638 1.24938 0.94743 0.98943 0.94429 0.86814 0.80554 0.83642 0.78607 1.20138 1.21129 1.18801 1.20828 0.87955 0.94668 1.51370 0.91034 1.18419 0.97355 0.85305 0.97840 1.20723 0.95527 0.99641 0.85428 1.26650 1.13442 0.95144 1.04413 1.83517 1.63441 1.17629 1.05190 1.26878 1.03864 0.95182 0.97129 1.20258 0.97570 0.95728 0.93861 1.21183 0.95397 0.96013 0.97516 1.21630 0.97020 0.97879 0.98315 1.21887 0.93923 0.93570 0.97696 1.60305 1.20203 1.20401 1.31286 1.21958 0.97199 0.95048 0.92957 1.21634 0.95074 0.97273 1.00881 1.66162 1.12711 1.06017 1.32028 0.92568 0.94391 0.95166 0.81106 0.88983 0.90193 0.91443 0.90842 0.91658 0.91019 0.95443 0.84367 0.95419 0.90555 0.90931 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.51 -14.67 9.65 -34.44 -0.33 -15.00 16 8 H 0.07 2.26 7.98 -52.49 -0.42 1.85 16 9 C 0.05 1.26 4.45 -29.04 -0.13 1.13 16 10 C 0.12 2.57 5.93 -84.23 -0.50 2.08 16 11 C -0.26 -4.99 11.14 29.12 0.32 -4.66 16 12 S 0.05 0.77 23.18 -107.50 -2.49 -1.72 16 13 C 0.05 0.81 5.90 -13.45 -0.08 0.73 16 14 C -0.03 -0.42 5.28 -27.88 -0.15 -0.57 16 15 C -0.08 -1.01 2.24 -90.50 -0.20 -1.21 16 16 C -0.11 -1.11 5.38 -26.65 -0.14 -1.25 16 17 C 0.06 0.57 6.55 -3.83 -0.03 0.55 16 18 N -0.69 -7.74 6.85 -113.81 -0.78 -8.52 16 19 C 0.06 0.76 6.55 -3.83 -0.03 0.73 16 20 C -0.11 -1.65 5.14 -26.65 -0.14 -1.79 16 21 N -0.45 -9.43 9.86 -8.05 -0.08 -9.51 16 22 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 23 H 0.04 0.96 7.20 -51.93 -0.37 0.59 16 24 H 0.03 0.71 7.57 -51.92 -0.39 0.32 16 25 H 0.17 3.04 8.06 -52.49 -0.42 2.62 16 26 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.34 3.15 8.90 -39.29 -0.35 2.80 16 34 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.08 1.47 6.97 -51.93 -0.36 1.11 16 LS Contribution 312.14 15.07 4.70 4.70 Total: -1.00 -31.35 312.14 -9.75 -41.10 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.71 Total: 1.26 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -1.49 Total: -17.29 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -0.08 Total: -44.89 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.49 Total: -1.72 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.35 -9.75 -41.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260950976.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.732 kcal (2) G-P(sol) polarization free energy of solvation -31.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds