Wall clock time and date at job start Mon Mar 30 2020 07:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99913 * 2 1 4 4 H 1.48504 * 109.47043 * 269.99834 * 3 2 1 5 5 H 1.48491 * 109.47398 * 30.00294 * 3 2 1 6 6 H 1.48507 * 109.46851 * 150.00271 * 3 2 1 7 7 C 1.37880 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00007 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99865 * 179.97438 * 7 2 1 10 10 C 1.50701 * 109.47273 * 180.02562 * 9 7 2 11 11 C 1.33635 * 122.74980 * 85.02148 * 10 9 7 12 12 S 1.76204 * 107.92257 * 179.76202 * 11 10 9 13 13 C 1.70973 * 90.27977 * 0.28281 * 12 11 10 14 14 C 1.50713 * 124.91339 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47002 * 269.69899 * 14 13 12 16 16 C 1.53118 * 109.52058 * 175.00157 * 15 14 13 17 17 C 1.53034 * 109.28068 * 177.61953 * 16 15 14 18 18 N 1.46848 * 109.52504 * 300.82023 * 17 16 15 19 19 C 1.46847 * 111.19556 * 61.74015 * 18 17 16 20 20 C 1.53044 * 109.52516 * 298.25761 * 19 18 17 21 21 N 1.29024 * 110.17290 * 359.71346 * 13 12 11 22 22 H 0.96997 * 119.99761 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47472 * 59.99702 * 9 7 2 24 24 H 1.09008 * 109.47004 * 300.00099 * 9 7 2 25 25 H 1.07998 * 126.04381 * 359.97438 * 11 10 9 26 26 H 1.08999 * 109.46747 * 149.69365 * 14 13 12 27 27 H 1.09000 * 109.46818 * 29.70190 * 14 13 12 28 28 H 1.08992 * 109.52438 * 54.87385 * 15 14 13 29 29 H 1.09001 * 109.50624 * 57.67975 * 16 15 14 30 30 H 1.08998 * 109.50047 * 297.56432 * 16 15 14 31 31 H 1.09000 * 109.46341 * 180.80474 * 17 16 15 32 32 H 1.08999 * 109.46274 * 60.83372 * 17 16 15 33 33 H 1.00901 * 111.00066 * 185.83397 * 18 17 16 34 34 H 1.08999 * 109.46628 * 58.27319 * 19 18 17 35 35 H 1.09003 * 109.46158 * 178.24166 * 19 18 17 36 36 H 1.08996 * 109.50067 * 299.23984 * 20 19 18 37 37 H 1.08999 * 109.53710 * 179.14269 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0139 -2.6149 -0.0023 11 6 4.1625 -3.3282 -1.1225 12 16 4.7739 -4.9191 -0.6752 13 6 4.7610 -4.4696 0.9743 14 6 5.1828 -5.3603 2.1145 15 6 3.9710 -6.1413 2.6268 16 6 4.4203 -7.1367 3.7000 17 6 3.1966 -7.8726 4.2506 18 7 2.2556 -6.9009 4.8221 19 6 1.7739 -5.9636 3.7994 20 6 2.9551 -5.1706 3.2353 21 7 4.3430 -3.2555 1.1014 22 1 -0.4849 0.8400 0.0004 23 1 3.8752 -0.6804 0.8888 24 1 3.8745 -0.6800 -0.8912 25 1 3.9491 -2.9885 -2.1252 26 1 5.5894 -4.7501 2.9210 27 1 5.9447 -6.0583 1.7675 28 1 3.5093 -6.6808 1.8000 29 1 4.9168 -6.6005 4.5088 30 1 5.1114 -7.8568 3.2620 31 1 3.5115 -8.5720 5.0251 32 1 2.7086 -8.4197 3.4441 33 1 1.4850 -7.3678 5.2763 34 1 1.2925 -6.5197 2.9949 35 1 1.0553 -5.2764 4.2462 36 1 3.4285 -4.6035 4.0368 37 1 2.5999 -4.4856 2.4655 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260950976.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:17 Heat of formation + Delta-G solvation = 1.871662 kcal Electronic energy + Delta-G solvation = -17894.688647 eV Core-core repulsion = 15182.704567 eV Total energy + Delta-G solvation = -2711.984080 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.89962 -39.56277 -35.67508 -34.83085 -32.65713 -31.68556 -30.11527 -28.58046 -25.71981 -24.15926 -23.84792 -22.18241 -20.82842 -20.30872 -19.05339 -18.35248 -17.60080 -16.56583 -16.20244 -15.65300 -15.53817 -15.24115 -14.95998 -14.93006 -14.52992 -14.19637 -13.92797 -13.67771 -13.47580 -13.05961 -13.01676 -12.69083 -12.48094 -12.14496 -12.09817 -11.82013 -11.74600 -11.63020 -11.36549 -11.20926 -10.81798 -10.43514 -10.22623 -9.45107 -9.38636 -8.33180 -6.38595 -0.10487 0.55845 0.84201 1.34204 1.37402 1.49447 2.00804 2.33173 3.00467 3.21958 3.31159 3.76670 3.83437 3.91908 4.25463 4.30157 4.38877 4.41768 4.46805 4.59774 4.65188 4.68238 4.75917 4.89165 4.93013 4.95045 4.98165 5.06724 5.21245 5.24438 5.30246 5.38409 5.49402 5.52522 6.06648 6.19629 6.51101 6.64042 7.01812 7.23987 8.83598 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019894 B = 0.005469 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.134546 B = 5119.000536 C = 6058.375819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.011 3.989 3 Si 0.952 3.048 4 H -0.258 1.258 5 H -0.281 1.281 6 H -0.251 1.251 7 C -0.517 4.517 8 H 0.022 0.978 9 C 0.057 3.943 10 C 0.082 3.918 11 C -0.278 4.278 12 S 0.137 5.863 13 C 0.045 3.955 14 C -0.033 4.033 15 C -0.075 4.075 16 C -0.104 4.104 17 C 0.055 3.945 18 N -0.694 5.694 19 C 0.062 3.938 20 C -0.108 4.108 21 N -0.496 5.496 22 H 0.269 0.731 23 H 0.028 0.972 24 H 0.044 0.956 25 H 0.179 0.821 26 H 0.092 0.908 27 H 0.118 0.882 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.030 0.970 33 H 0.351 0.649 34 H 0.025 0.975 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.939 -16.678 4.891 21.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.186 4.186 3 Si 0.774 3.226 4 H -0.182 1.182 5 H -0.206 1.206 6 H -0.175 1.175 7 C -0.556 4.556 8 H 0.040 0.960 9 C 0.017 3.983 10 C -0.048 4.048 11 C -0.416 4.416 12 S 0.391 5.609 13 C -0.233 4.233 14 C -0.074 4.074 15 C -0.095 4.095 16 C -0.142 4.142 17 C -0.074 4.074 18 N -0.327 5.327 19 C -0.068 4.068 20 C -0.146 4.146 21 N -0.211 5.211 22 H 0.078 0.922 23 H 0.046 0.954 24 H 0.062 0.938 25 H 0.197 0.803 26 H 0.110 0.890 27 H 0.136 0.864 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.049 0.951 33 H 0.169 0.831 34 H 0.043 0.957 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 12.540 -16.829 5.062 21.589 hybrid contribution -1.589 1.515 -0.723 2.311 sum 10.951 -15.314 4.339 19.320 Atomic orbital electron populations 1.70048 1.08262 1.28371 1.52042 1.25930 0.95635 1.03296 0.93727 0.85637 0.79319 0.77973 0.79641 1.18237 1.20629 1.17478 1.20989 0.90356 0.92935 1.51274 0.95965 1.18192 0.94388 0.87967 0.97749 1.20447 0.98086 0.99215 0.87099 1.26890 1.12860 0.97621 1.04211 1.83093 1.61180 1.13721 1.02866 1.27609 1.01837 0.94493 0.99375 1.20500 0.98465 0.95717 0.92690 1.21153 0.94413 0.95755 0.98189 1.21629 0.97600 0.97636 0.97343 1.22025 0.93373 0.93427 0.98578 1.60276 1.20937 1.20953 1.30524 1.21799 0.96293 0.95299 0.93391 1.21527 0.96427 0.97388 0.99292 1.66113 1.14760 1.08073 1.32163 0.92228 0.95375 0.93791 0.80333 0.88977 0.86360 0.91674 0.90991 0.88649 0.88644 0.95135 0.83057 0.95724 0.91764 0.92147 0.94797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 2 C 0.01 0.68 5.47 84.66 0.46 1.15 16 3 Si 0.95 44.94 27.47 68.60 1.88 46.83 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.25 -11.26 6.54 99.48 0.65 -10.61 16 7 C -0.52 -31.24 9.65 25.60 0.25 -30.99 16 8 H 0.02 1.50 7.98 -2.91 -0.02 1.48 16 9 C 0.06 2.90 4.45 29.10 0.13 3.02 16 10 C 0.08 3.70 5.93 41.52 0.25 3.94 16 11 C -0.28 -10.65 11.14 66.77 0.74 -9.91 16 12 S 0.14 4.00 23.18 -56.49 -1.31 2.69 16 13 C 0.05 1.47 5.90 88.52 0.52 1.99 16 14 C -0.03 -0.77 5.28 29.85 0.16 -0.61 16 15 C -0.07 -1.74 2.24 -10.71 -0.02 -1.76 16 16 C -0.10 -1.74 5.38 30.65 0.16 -1.58 16 17 C 0.05 0.91 6.55 86.32 0.57 1.48 16 18 N -0.69 -14.62 6.85 -513.99 -3.52 -18.14 16 19 C 0.06 1.66 6.55 86.33 0.57 2.23 16 20 C -0.11 -3.32 5.14 30.65 0.16 -3.16 16 21 N -0.50 -20.99 9.86 -179.39 -1.77 -22.76 16 22 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 23 H 0.03 1.45 7.20 -2.39 -0.02 1.44 16 24 H 0.04 2.07 7.57 -2.38 -0.02 2.05 16 25 H 0.18 6.33 8.06 -2.91 -0.02 6.31 16 26 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.35 6.01 8.90 -89.69 -0.80 5.21 16 34 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.03 1.33 6.97 -2.39 -0.02 1.32 16 Total: -1.00 -72.13 312.14 -0.27 -72.40 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: 0.20 Total: 13.31 kcal Atomic # 6 Polarization: -38.14 SS G_CDS: 3.94 Total: -34.20 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -4.99 Total: -101.03 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.83 kcal Atomic # 16 Polarization: 4.00 SS G_CDS: -1.31 Total: 2.69 kcal Total: -72.13 -0.27 -72.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260950976.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.273 kcal (2) G-P(sol) polarization free energy of solvation -72.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds