Wall clock time and date at job start Mon Mar 30 2020 06:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38254 * 119.99834 * 2 1 4 4 C 1.38222 * 119.99920 * 179.78942 * 3 2 1 5 5 C 1.38259 * 119.99573 * 0.44536 * 4 3 2 6 6 C 1.38216 * 120.00111 * 359.80820 * 5 4 3 7 7 C 1.38213 * 119.99863 * 180.27755 * 2 1 3 8 8 C 1.50703 * 120.00222 * 359.97438 * 7 2 1 9 9 S 1.81404 * 109.46934 * 89.99586 * 8 7 2 10 10 C 1.81402 * 102.99652 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.46761 * 180.02562 * 10 9 8 12 12 O 1.42905 * 109.46848 * 180.02562 * 11 10 9 13 13 C 1.42904 * 113.99966 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.46980 * 180.02562 * 13 12 11 15 15 H 1.07994 * 120.00160 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99486 * 180.02562 * 14 13 12 17 17 N 1.31505 * 120.00259 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99599 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46964 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46683 * 120.00390 * 18 16 14 21 21 H 1.48495 * 109.47509 * 240.00254 * 18 16 14 22 22 H 1.09001 * 109.46953 * 269.72186 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.71784 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.72414 * 1 2 3 25 25 H 1.07997 * 120.00151 * 0.02562 * 3 2 1 26 26 H 1.07997 * 120.00183 * 180.27524 * 4 3 2 27 27 H 1.07993 * 119.99526 * 179.83297 * 5 4 3 28 28 H 1.07999 * 120.00245 * 179.97438 * 6 5 4 29 29 H 1.08994 * 109.47489 * 209.99894 * 8 7 2 30 30 H 1.09002 * 109.46869 * 330.00524 * 8 7 2 31 31 H 1.08998 * 109.47326 * 300.00334 * 10 9 8 32 32 H 1.09004 * 109.47224 * 60.00829 * 10 9 8 33 33 H 1.08998 * 109.47259 * 300.00113 * 11 10 9 34 34 H 1.08997 * 109.47247 * 60.00789 * 11 10 9 35 35 H 1.08999 * 109.46978 * 300.00495 * 13 12 11 36 36 H 1.08998 * 109.46597 * 60.00512 * 13 12 11 37 37 H 0.97007 * 120.00090 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0044 5 6 4.2718 0.0000 -0.0005 6 6 3.5806 -1.1970 -0.0058 7 6 2.1981 -1.1970 -0.0058 8 6 1.4446 -2.5021 -0.0115 9 16 1.1415 -3.0177 -1.7241 10 6 0.2411 -4.5801 -1.5265 11 6 -0.0935 -5.1536 -2.9049 12 8 -0.8034 -6.3841 -2.7493 13 6 -1.1662 -7.0060 -3.9837 14 6 -1.9062 -8.2881 -3.7017 15 1 -2.0823 -8.5969 -2.6820 16 6 -2.3585 -9.0668 -4.7458 17 7 -2.1437 -8.6910 -5.9876 18 14 -3.2752 -10.6565 -4.3963 19 1 -3.3850 -10.8522 -2.9284 20 1 -4.6351 -10.5842 -4.9888 21 1 -2.5350 -11.7966 -4.9941 22 1 -0.3633 -0.0050 1.0277 23 1 -0.3634 0.8925 -0.5094 24 1 -0.3633 -0.8875 -0.5181 25 1 1.6583 2.1326 0.0004 26 1 4.1205 2.1326 0.0089 27 1 5.3517 0.0000 0.0002 28 1 4.1206 -2.1323 -0.0101 29 1 2.0338 -3.2641 0.4985 30 1 0.4923 -2.3741 0.5032 31 1 0.8609 -5.2899 -0.9787 32 1 -0.6811 -4.4006 -0.9737 33 1 -0.7131 -4.4440 -3.4531 34 1 0.8287 -5.3333 -3.4574 35 1 -1.8078 -6.3344 -4.5540 36 1 -0.2663 -7.2244 -4.5586 37 1 -2.4623 -9.2387 -6.7221 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292640725.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:41 Heat of formation + Delta-G solvation = -42.473929 kcal Electronic energy + Delta-G solvation = -16537.717859 eV Core-core repulsion = 13791.518059 eV Total energy + Delta-G solvation = -2746.199800 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.71366 -36.85941 -33.62164 -32.87191 -32.36803 -30.90771 -27.91841 -27.05410 -26.61152 -22.82035 -22.33674 -22.09795 -20.92208 -16.82679 -16.42580 -16.14305 -15.99094 -15.57439 -15.36461 -15.22248 -14.52807 -14.07579 -13.63447 -13.45834 -13.35878 -13.28479 -12.77777 -12.76139 -12.36204 -12.14396 -11.96476 -11.25361 -11.20298 -11.16069 -10.86913 -10.77113 -10.75786 -10.09084 -10.03622 -9.13672 -9.00605 -8.89061 -8.76500 -8.23573 -7.66259 -6.13540 -4.15797 0.80951 1.16382 1.84083 2.58232 3.27758 3.34138 3.40503 3.59013 4.33584 4.40245 4.51028 4.71200 4.77503 4.87387 4.93343 5.09750 5.17903 5.22925 5.28744 5.32166 5.43516 5.49086 5.62749 5.67063 5.75270 5.80411 5.98264 6.13551 6.17943 6.22813 6.27178 6.39779 6.76268 7.05993 7.38615 7.75999 8.10450 8.49882 8.96815 9.49039 10.97984 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.054909 B = 0.002659 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.814155 B =10526.870201 C =10640.162175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.065 4.065 3 C -0.123 4.123 4 C -0.114 4.114 5 C -0.128 4.128 6 C -0.097 4.097 7 C -0.072 4.072 8 C -0.050 4.050 9 S -0.242 6.242 10 C -0.085 4.085 11 C 0.080 3.920 12 O -0.395 6.395 13 C 0.196 3.804 14 C -0.516 4.516 15 H 0.067 0.933 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.909 3.091 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.282 1.282 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.122 0.878 26 H 0.121 0.879 27 H 0.122 0.878 28 H 0.125 0.875 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.007 0.993 36 H 0.007 0.993 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.061 19.371 13.257 25.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.067 4.067 3 C -0.141 4.141 4 C -0.133 4.133 5 C -0.146 4.146 6 C -0.117 4.117 7 C -0.074 4.074 8 C -0.197 4.197 9 S -0.013 6.013 10 C -0.233 4.233 11 C 0.002 3.998 12 O -0.315 6.315 13 C 0.121 3.879 14 C -0.554 4.554 15 H 0.085 0.915 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.736 3.264 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.208 1.208 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.097 0.903 25 H 0.140 0.860 26 H 0.139 0.861 27 H 0.140 0.860 28 H 0.143 0.857 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.025 0.975 36 H 0.025 0.975 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.232 19.677 12.295 25.358 hybrid contribution -0.676 -1.331 0.819 1.703 sum 9.556 18.346 13.115 24.493 Atomic orbital electron populations 1.20939 0.90984 1.03872 1.02366 1.19798 0.96292 0.92358 0.98242 1.21021 0.94282 0.97371 1.01441 1.21163 0.94322 0.98082 0.99695 1.21105 0.99912 0.92375 1.01182 1.21056 0.93269 0.98531 0.98813 1.19100 0.93493 0.92708 1.02061 1.22306 1.03297 0.97495 0.96613 1.87026 1.75006 1.28504 1.10735 1.23318 1.02331 0.95404 1.02293 1.21783 0.96442 0.88578 0.93021 1.87836 1.74922 1.34186 1.34553 1.20253 0.94531 0.92378 0.80704 1.21079 1.35622 1.04938 0.93787 0.91457 1.24963 0.96264 0.98607 0.94701 1.69972 1.46480 1.38800 0.98383 0.86264 0.79213 0.82327 0.78587 1.19475 1.20786 1.20783 0.91145 0.91281 0.90293 0.85964 0.86086 0.85964 0.85737 0.89166 0.88933 0.89464 0.89465 0.93551 0.93547 0.97475 0.97471 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.08 9.20 36.01 0.33 -0.75 16 2 C -0.07 -0.65 5.88 -104.62 -0.62 -1.26 16 3 C -0.12 -1.10 9.70 -39.58 -0.38 -1.48 16 4 C -0.11 -0.95 10.05 -39.58 -0.40 -1.35 16 5 C -0.13 -1.12 10.05 -39.58 -0.40 -1.52 16 6 C -0.10 -0.96 9.70 -39.58 -0.38 -1.34 16 7 C -0.07 -0.77 5.14 -104.62 -0.54 -1.30 16 8 C -0.05 -0.53 5.33 36.01 0.19 -0.34 16 9 S -0.24 -3.31 21.36 -107.50 -2.30 -5.61 16 10 C -0.09 -1.31 6.31 37.16 0.23 -1.08 16 11 C 0.08 1.55 5.95 37.16 0.22 1.78 16 12 O -0.39 -9.66 10.33 -35.23 -0.36 -10.03 16 13 C 0.20 5.45 5.69 36.00 0.20 5.65 16 14 C -0.52 -15.30 9.43 -34.44 -0.32 -15.62 16 15 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 18 Si 0.91 21.85 29.54 -169.99 -5.02 16.83 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 24 H 0.08 0.77 6.37 -51.93 -0.33 0.44 16 25 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 26 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 27 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 28 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 30 H 0.09 0.89 6.70 -51.92 -0.35 0.54 16 31 H 0.09 1.29 8.14 -51.92 -0.42 0.87 16 32 H 0.09 1.28 8.14 -51.92 -0.42 0.86 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 328.30 15.07 4.95 4.95 Total: -1.00 -31.69 328.30 -9.67 -41.36 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -5.71 Total: -4.15 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -1.96 Total: -17.09 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 0.74 Total: -26.26 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.36 Total: -10.03 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -3.31 SS G_CDS: -2.30 Total: -5.61 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.69 -9.67 -41.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292640725.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.112 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds