Wall clock time and date at job start Mon Mar 30 2020 06:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38254 * 119.99834 * 2 1 4 4 C 1.38222 * 119.99920 * 179.78942 * 3 2 1 5 5 C 1.38259 * 119.99573 * 0.44536 * 4 3 2 6 6 C 1.38216 * 120.00111 * 359.80820 * 5 4 3 7 7 C 1.38213 * 119.99863 * 180.27755 * 2 1 3 8 8 C 1.50703 * 120.00222 * 359.97438 * 7 2 1 9 9 S 1.81404 * 109.46934 * 89.99586 * 8 7 2 10 10 C 1.81402 * 102.99652 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.46761 * 180.02562 * 10 9 8 12 12 O 1.42905 * 109.46848 * 180.02562 * 11 10 9 13 13 C 1.42904 * 113.99966 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.46980 * 180.02562 * 13 12 11 15 15 H 1.07994 * 120.00160 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99486 * 180.02562 * 14 13 12 17 17 N 1.31505 * 120.00259 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99599 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46964 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46683 * 120.00390 * 18 16 14 21 21 H 1.48495 * 109.47509 * 240.00254 * 18 16 14 22 22 H 1.09001 * 109.46953 * 269.72186 * 1 2 3 23 23 H 1.09000 * 109.47318 * 29.71784 * 1 2 3 24 24 H 1.09000 * 109.47161 * 149.72414 * 1 2 3 25 25 H 1.07997 * 120.00151 * 0.02562 * 3 2 1 26 26 H 1.07997 * 120.00183 * 180.27524 * 4 3 2 27 27 H 1.07993 * 119.99526 * 179.83297 * 5 4 3 28 28 H 1.07999 * 120.00245 * 179.97438 * 6 5 4 29 29 H 1.08994 * 109.47489 * 209.99894 * 8 7 2 30 30 H 1.09002 * 109.46869 * 330.00524 * 8 7 2 31 31 H 1.08998 * 109.47326 * 300.00334 * 10 9 8 32 32 H 1.09004 * 109.47224 * 60.00829 * 10 9 8 33 33 H 1.08998 * 109.47259 * 300.00113 * 11 10 9 34 34 H 1.08997 * 109.47247 * 60.00789 * 11 10 9 35 35 H 1.08999 * 109.46978 * 300.00495 * 13 12 11 36 36 H 1.08998 * 109.46597 * 60.00512 * 13 12 11 37 37 H 0.97007 * 120.00090 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0044 5 6 4.2718 0.0000 -0.0005 6 6 3.5806 -1.1970 -0.0058 7 6 2.1981 -1.1970 -0.0058 8 6 1.4446 -2.5021 -0.0115 9 16 1.1415 -3.0177 -1.7241 10 6 0.2411 -4.5801 -1.5265 11 6 -0.0935 -5.1536 -2.9049 12 8 -0.8034 -6.3841 -2.7493 13 6 -1.1662 -7.0060 -3.9837 14 6 -1.9062 -8.2881 -3.7017 15 1 -2.0823 -8.5969 -2.6820 16 6 -2.3585 -9.0668 -4.7458 17 7 -2.1437 -8.6910 -5.9876 18 14 -3.2752 -10.6565 -4.3963 19 1 -3.3850 -10.8522 -2.9284 20 1 -4.6351 -10.5842 -4.9888 21 1 -2.5350 -11.7966 -4.9941 22 1 -0.3633 -0.0050 1.0277 23 1 -0.3634 0.8925 -0.5094 24 1 -0.3633 -0.8875 -0.5181 25 1 1.6583 2.1326 0.0004 26 1 4.1205 2.1326 0.0089 27 1 5.3517 0.0000 0.0002 28 1 4.1206 -2.1323 -0.0101 29 1 2.0338 -3.2641 0.4985 30 1 0.4923 -2.3741 0.5032 31 1 0.8609 -5.2899 -0.9787 32 1 -0.6811 -4.4006 -0.9737 33 1 -0.7131 -4.4440 -3.4531 34 1 0.8287 -5.3333 -3.4574 35 1 -1.8078 -6.3344 -4.5540 36 1 -0.2663 -7.2244 -4.5586 37 1 -2.4623 -9.2387 -6.7221 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292640725.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:40 Heat of formation + Delta-G solvation = -59.166784 kcal Electronic energy + Delta-G solvation = -16538.441715 eV Core-core repulsion = 13791.518059 eV Total energy + Delta-G solvation = -2746.923657 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.39588 -38.76617 -35.04961 -34.31749 -33.06789 -32.50736 -29.21907 -28.61316 -27.35146 -24.68404 -23.98447 -22.96039 -21.65031 -18.70079 -17.82269 -17.39103 -17.12639 -16.83960 -16.62017 -16.46665 -15.92926 -15.25143 -15.01668 -14.89306 -14.24623 -14.08808 -13.97657 -13.81781 -13.61134 -13.06669 -12.96433 -12.95783 -12.74807 -12.59303 -12.55009 -12.07746 -11.88125 -11.83063 -11.35191 -11.09910 -10.93912 -10.34853 -9.70976 -9.48371 -8.75504 -8.35204 -6.48608 -0.03973 0.47879 0.86760 1.39734 1.41400 1.55387 1.56465 2.33561 2.89192 2.98683 3.18849 3.64089 3.80061 3.83318 4.04403 4.05935 4.13098 4.27165 4.31853 4.45649 4.49931 4.63209 4.66657 4.67566 4.80601 4.84171 4.85176 4.95077 5.10567 5.13240 5.32282 5.51168 5.55330 5.60730 5.69161 5.89824 6.10189 6.42999 6.73535 7.23157 8.77509 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.054909 B = 0.002659 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.814155 B =10526.870201 C =10640.162175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.078 4.078 3 C -0.132 4.132 4 C -0.115 4.115 5 C -0.135 4.135 6 C -0.109 4.109 7 C -0.093 4.093 8 C -0.036 4.036 9 S -0.262 6.262 10 C -0.075 4.075 11 C 0.075 3.925 12 O -0.406 6.406 13 C 0.208 3.792 14 C -0.550 4.550 15 H 0.064 0.936 16 C 0.005 3.995 17 N -0.930 5.930 18 Si 0.987 3.013 19 H -0.263 1.263 20 H -0.270 1.270 21 H -0.271 1.271 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.065 0.935 25 H 0.141 0.859 26 H 0.145 0.855 27 H 0.142 0.858 28 H 0.130 0.870 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.046 0.954 34 H 0.045 0.955 35 H -0.011 1.011 36 H -0.012 1.012 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.201 19.798 14.466 26.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.080 4.080 3 C -0.150 4.150 4 C -0.133 4.133 5 C -0.153 4.153 6 C -0.129 4.129 7 C -0.094 4.094 8 C -0.183 4.183 9 S -0.033 6.033 10 C -0.223 4.223 11 C -0.003 4.003 12 O -0.326 6.326 13 C 0.133 3.867 14 C -0.588 4.588 15 H 0.082 0.918 16 C -0.193 4.193 17 N -0.570 5.570 18 Si 0.810 3.190 19 H -0.187 1.187 20 H -0.196 1.196 21 H -0.196 1.196 22 H 0.101 0.899 23 H 0.096 0.904 24 H 0.084 0.916 25 H 0.159 0.841 26 H 0.163 0.837 27 H 0.160 0.840 28 H 0.148 0.852 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.006 0.994 36 H 0.006 0.994 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.382 20.119 13.510 26.365 hybrid contribution -0.616 -1.286 0.460 1.498 sum 9.767 18.834 13.970 25.402 Atomic orbital electron populations 1.20943 0.90397 1.03627 1.03069 1.20043 0.96972 0.92664 0.98305 1.21325 0.94829 0.97784 1.01060 1.21525 0.94379 0.99033 0.98390 1.21413 1.01083 0.92154 1.00657 1.21269 0.93263 0.99426 0.98979 1.19192 0.93936 0.92717 1.03588 1.22344 1.04106 0.97963 0.93912 1.87101 1.74640 1.27155 1.14397 1.23115 1.03142 0.96500 0.99586 1.22007 0.95727 0.86658 0.95897 1.87785 1.75606 1.36308 1.32898 1.19899 0.93180 0.92087 0.81526 1.21404 1.37093 1.06209 0.94075 0.91751 1.26019 0.96670 1.02464 0.94196 1.70078 1.46945 1.40449 0.99484 0.85078 0.77948 0.77162 0.78851 1.18687 1.19562 1.19576 0.89939 0.90407 0.91632 0.84134 0.83675 0.84010 0.85214 0.88155 0.87966 0.88880 0.88779 0.93607 0.93673 0.99362 0.99393 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.99 9.20 71.24 0.66 -1.34 16 2 C -0.08 -1.45 5.88 -19.86 -0.12 -1.57 16 3 C -0.13 -2.10 9.70 22.27 0.22 -1.89 16 4 C -0.11 -1.66 10.05 22.27 0.22 -1.44 16 5 C -0.14 -2.12 10.05 22.27 0.22 -1.89 16 6 C -0.11 -2.03 9.70 22.27 0.22 -1.82 16 7 C -0.09 -1.87 5.14 -19.87 -0.10 -1.97 16 8 C -0.04 -0.73 5.33 71.24 0.38 -0.35 16 9 S -0.26 -7.09 21.36 -56.49 -1.21 -8.30 16 10 C -0.08 -2.31 6.31 71.98 0.45 -1.85 16 11 C 0.08 2.97 5.95 71.98 0.43 3.39 16 12 O -0.41 -20.36 10.33 -148.98 -1.54 -21.90 16 13 C 0.21 12.00 5.69 71.23 0.41 12.40 16 14 C -0.55 -33.16 9.43 25.60 0.24 -32.92 16 15 H 0.06 3.82 7.81 -2.91 -0.02 3.80 16 16 C 0.01 0.30 5.46 84.66 0.46 0.76 16 17 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 18 Si 0.99 44.44 29.54 68.60 2.03 46.47 16 19 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.08 1.08 8.08 -2.39 -0.02 1.06 16 24 H 0.06 1.23 6.37 -2.39 -0.02 1.21 16 25 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 26 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 27 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 28 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 29 H 0.10 1.81 8.08 -2.39 -0.02 1.79 16 30 H 0.10 1.86 6.70 -2.39 -0.02 1.84 16 31 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 35 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 36 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 37 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 Total: -1.00 -67.94 328.30 4.28 -63.66 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: 1.03 Total: 6.71 kcal Atomic # 6 Polarization: -34.17 SS G_CDS: 3.69 Total: -30.48 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.28 Total: -56.15 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -1.54 Total: -21.90 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: -7.09 SS G_CDS: -1.21 Total: -8.30 kcal Total: -67.94 4.28 -63.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292640725.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.491 kcal (2) G-P(sol) polarization free energy of solvation -67.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds