Wall clock time and date at job start Mon Mar 30 2020 06:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38331 * 119.91644 * 2 1 4 4 C 1.38059 * 120.07490 * 180.25790 * 3 2 1 5 5 C 1.38999 * 119.92207 * 359.43801 * 4 3 2 6 6 S 1.76194 * 120.08105 * 180.30513 * 5 4 3 7 7 C 1.81397 * 103.00122 * 359.97438 * 6 5 4 8 8 C 1.53001 * 109.47101 * 179.97438 * 7 6 5 9 9 O 1.42896 * 109.47179 * 180.02562 * 8 7 6 10 10 C 1.42906 * 114.00234 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47120 * 179.97438 * 10 9 8 12 12 H 1.08006 * 120.00308 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99804 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00230 * 0.02562 * 13 11 10 15 15 Si 1.86810 * 119.99983 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.46851 * 60.00178 * 15 13 11 17 17 H 1.48500 * 109.47165 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46784 * 300.00376 * 15 13 11 19 19 C 1.38962 * 119.83789 * 0.28068 * 5 4 3 20 20 C 1.38101 * 119.91771 * 0.02562 * 19 5 4 21 21 C 1.50696 * 119.95933 * 180.02562 * 20 19 5 22 22 H 1.08997 * 109.47461 * 270.30340 * 1 2 3 23 23 H 1.09005 * 109.46861 * 30.30198 * 1 2 3 24 24 H 1.09000 * 109.47004 * 150.29904 * 1 2 3 25 25 H 1.07998 * 119.96135 * 359.97438 * 3 2 1 26 26 H 1.08002 * 120.04209 * 179.72183 * 4 3 2 27 27 H 1.08995 * 109.47424 * 300.00270 * 7 6 5 28 28 H 1.08999 * 109.46962 * 60.00322 * 7 6 5 29 29 H 1.08995 * 109.47226 * 300.00421 * 8 7 6 30 30 H 1.08999 * 109.46926 * 60.00329 * 8 7 6 31 31 H 1.09000 * 109.46209 * 299.99878 * 10 9 8 32 32 H 1.08990 * 109.46814 * 59.99428 * 10 9 8 33 33 H 0.97000 * 120.00601 * 179.97438 * 14 13 11 34 34 H 1.07994 * 120.03795 * 180.02562 * 19 5 4 35 35 H 1.09001 * 109.47210 * 89.99964 * 21 20 19 36 36 H 1.09004 * 109.47081 * 209.99719 * 21 20 19 37 37 H 1.08998 * 109.47510 * 329.99783 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1990 0.0000 4 6 3.5775 1.2028 -0.0054 5 6 4.2742 0.0001 0.0010 6 16 6.0362 0.0001 0.0023 7 6 6.4442 1.7676 -0.0068 8 6 7.9645 1.9400 -0.0060 9 8 8.2859 3.3323 -0.0126 10 6 9.6887 3.6050 -0.0130 11 6 9.9107 5.0955 -0.0207 12 1 9.0651 5.7675 -0.0254 13 6 11.1932 5.6015 -0.0219 14 7 12.2229 4.7834 -0.0168 15 14 11.4684 7.4492 -0.0308 16 1 10.8477 8.0478 1.1780 17 1 12.9261 7.7325 -0.0314 18 1 10.8501 8.0358 -1.2469 19 6 3.5777 -1.2024 0.0069 20 6 2.1967 -1.1985 0.0058 21 6 1.4405 -2.5019 0.0128 22 1 -0.3634 0.0054 1.0276 23 1 -0.3633 0.8873 -0.5185 24 1 -0.3633 -0.8927 -0.5092 25 1 1.6549 2.1331 -0.0004 26 1 4.1156 2.1392 -0.0099 27 1 6.0259 2.2324 -0.8995 28 1 6.0247 2.2419 0.8804 29 1 8.3824 1.4752 0.8869 30 1 8.3844 1.4656 -0.8929 31 1 10.1427 3.1743 0.8795 32 1 10.1440 3.1656 -0.9004 33 1 13.1252 5.1393 -0.0180 34 1 4.1158 -2.1388 0.0123 35 1 1.2574 -2.8103 1.0421 36 1 0.4887 -2.3725 -0.5025 37 1 2.0282 -3.2658 -0.4962 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292660313.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:43 Heat of formation + Delta-G solvation = -43.083912 kcal Electronic energy + Delta-G solvation = -16589.250778 eV Core-core repulsion = 13843.024527 eV Total energy + Delta-G solvation = -2746.226251 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.61112 -36.92711 -33.69774 -32.89895 -32.34618 -31.02042 -27.84561 -27.18544 -26.63127 -23.03791 -22.35499 -21.88677 -21.17617 -17.27403 -16.41020 -16.22755 -15.87469 -15.50591 -15.43398 -14.58682 -14.55638 -14.25018 -13.63085 -13.29376 -13.25391 -13.06702 -13.03373 -12.88419 -12.26852 -12.15252 -12.00011 -11.44364 -11.23915 -11.14106 -10.86750 -10.82795 -10.77540 -10.17396 -10.10863 -9.54634 -9.18588 -8.92604 -8.90886 -8.26170 -7.38104 -6.14753 -4.17389 1.04461 1.20126 1.43743 2.41541 3.30119 3.32881 3.36636 3.47152 4.31770 4.54761 4.62207 4.76294 4.81167 4.88316 5.07254 5.07665 5.21568 5.22478 5.24768 5.40274 5.48437 5.55688 5.56890 5.58912 5.67301 5.83354 5.91633 6.04462 6.09349 6.14820 6.19810 6.44167 6.77029 7.02388 7.35790 7.73616 8.08088 8.46304 8.94136 9.47406 10.96644 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.045201 B = 0.002841 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.310804 B = 9853.666567 C =10436.624884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.098 4.098 3 C -0.096 4.096 4 C -0.134 4.134 5 C -0.078 4.078 6 S -0.110 6.110 7 C -0.103 4.103 8 C 0.080 3.920 9 O -0.393 6.393 10 C 0.196 3.804 11 C -0.518 4.518 12 H 0.066 0.934 13 C 0.057 3.943 14 N -0.898 5.898 15 Si 0.910 3.090 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.100 4.100 20 C -0.072 4.072 21 C -0.116 4.116 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.125 0.875 26 H 0.128 0.872 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.008 0.992 32 H 0.008 0.992 33 H 0.266 0.734 34 H 0.127 0.873 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.781 -13.086 0.080 25.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.101 4.101 3 C -0.116 4.116 4 C -0.158 4.158 5 C -0.191 4.191 6 S 0.134 5.866 7 C -0.251 4.251 8 C 0.001 3.999 9 O -0.313 6.313 10 C 0.122 3.878 11 C -0.557 4.557 12 H 0.085 0.915 13 C -0.144 4.144 14 N -0.536 5.536 15 Si 0.737 3.263 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.124 4.124 20 C -0.074 4.074 21 C -0.173 4.173 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.143 0.857 26 H 0.146 0.854 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.075 0.925 34 H 0.144 0.856 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.796 -13.811 0.084 24.965 hybrid contribution -0.276 1.851 0.005 1.872 sum -21.072 -11.959 0.089 24.229 Atomic orbital electron populations 1.20835 0.91249 1.02773 1.02258 1.19759 0.95987 0.92583 1.01790 1.20926 0.93561 0.97601 0.99510 1.21263 0.94888 0.96926 1.02723 1.21761 0.96889 0.96383 1.04104 1.85356 0.98585 1.10655 1.91970 1.23586 1.01252 0.93750 1.06531 1.21766 0.90670 0.86919 1.00535 1.87842 1.28961 1.19213 1.95319 1.20258 0.74802 0.97031 0.95706 1.20996 0.92545 0.90738 1.51372 0.91535 1.24954 0.95476 0.99000 0.95014 1.69948 0.98631 1.34898 1.50155 0.86365 0.76993 0.84077 0.78871 1.19967 1.21084 1.19969 1.20587 0.93185 0.96410 1.02169 1.19635 0.93000 0.95023 0.99702 1.20860 1.00047 0.93923 1.02449 0.91251 0.91661 0.91218 0.85742 0.85434 0.88727 0.88734 0.93361 0.93355 0.97416 0.97418 0.92483 0.85557 0.91037 0.91051 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.60 36.01 0.35 -0.44 16 2 C -0.10 -0.97 5.88 -104.57 -0.62 -1.59 16 3 C -0.10 -1.03 9.69 -39.61 -0.38 -1.42 16 4 C -0.13 -1.67 9.36 -39.37 -0.37 -2.04 16 5 C -0.08 -1.02 6.11 -39.03 -0.24 -1.26 16 6 S -0.11 -1.55 21.92 -107.50 -2.36 -3.90 16 7 C -0.10 -1.59 4.70 37.16 0.17 -1.42 16 8 C 0.08 1.51 5.95 37.16 0.22 1.73 16 9 O -0.39 -9.50 10.33 -35.23 -0.36 -9.87 16 10 C 0.20 5.41 5.69 36.00 0.20 5.61 16 11 C -0.52 -15.28 9.43 -34.44 -0.32 -15.61 16 12 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 15 Si 0.91 21.79 29.54 -169.99 -5.02 16.77 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 C -0.10 -1.15 9.45 -39.36 -0.37 -1.52 16 20 C -0.07 -0.72 5.88 -104.66 -0.62 -1.34 16 21 C -0.12 -0.81 9.60 36.00 0.35 -0.47 16 22 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 24 H 0.07 0.40 5.94 -51.93 -0.31 0.09 16 25 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 26 H 0.13 1.55 5.88 -52.49 -0.31 1.25 16 27 H 0.09 1.42 7.75 -51.93 -0.40 1.02 16 28 H 0.09 1.42 7.75 -51.92 -0.40 1.02 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.41 5.94 -51.93 -0.31 0.10 16 37 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 LS Contribution 323.71 15.07 4.88 4.88 Total: -1.00 -31.24 323.71 -9.35 -40.59 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -5.50 Total: -4.15 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -1.72 Total: -18.19 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.74 Total: -26.12 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.36 Total: -9.87 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.36 Total: -3.90 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.24 -9.35 -40.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292660313.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.499 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds