Wall clock time and date at job start Mon Mar 30 2020 06:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38331 * 119.91644 * 2 1 4 4 C 1.38059 * 120.07490 * 180.25790 * 3 2 1 5 5 C 1.38999 * 119.92207 * 359.43801 * 4 3 2 6 6 S 1.76194 * 120.08105 * 180.30513 * 5 4 3 7 7 C 1.81397 * 103.00122 * 359.97438 * 6 5 4 8 8 C 1.53001 * 109.47101 * 179.97438 * 7 6 5 9 9 O 1.42896 * 109.47179 * 180.02562 * 8 7 6 10 10 C 1.42906 * 114.00234 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47120 * 179.97438 * 10 9 8 12 12 H 1.08006 * 120.00308 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99804 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00230 * 0.02562 * 13 11 10 15 15 Si 1.86810 * 119.99983 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.46851 * 60.00178 * 15 13 11 17 17 H 1.48500 * 109.47165 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46784 * 300.00376 * 15 13 11 19 19 C 1.38962 * 119.83789 * 0.28068 * 5 4 3 20 20 C 1.38101 * 119.91771 * 0.02562 * 19 5 4 21 21 C 1.50696 * 119.95933 * 180.02562 * 20 19 5 22 22 H 1.08997 * 109.47461 * 270.30340 * 1 2 3 23 23 H 1.09005 * 109.46861 * 30.30198 * 1 2 3 24 24 H 1.09000 * 109.47004 * 150.29904 * 1 2 3 25 25 H 1.07998 * 119.96135 * 359.97438 * 3 2 1 26 26 H 1.08002 * 120.04209 * 179.72183 * 4 3 2 27 27 H 1.08995 * 109.47424 * 300.00270 * 7 6 5 28 28 H 1.08999 * 109.46962 * 60.00322 * 7 6 5 29 29 H 1.08995 * 109.47226 * 300.00421 * 8 7 6 30 30 H 1.08999 * 109.46926 * 60.00329 * 8 7 6 31 31 H 1.09000 * 109.46209 * 299.99878 * 10 9 8 32 32 H 1.08990 * 109.46814 * 59.99428 * 10 9 8 33 33 H 0.97000 * 120.00601 * 179.97438 * 14 13 11 34 34 H 1.07994 * 120.03795 * 180.02562 * 19 5 4 35 35 H 1.09001 * 109.47210 * 89.99964 * 21 20 19 36 36 H 1.09004 * 109.47081 * 209.99719 * 21 20 19 37 37 H 1.08998 * 109.47510 * 329.99783 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1990 0.0000 4 6 3.5775 1.2028 -0.0054 5 6 4.2742 0.0001 0.0010 6 16 6.0362 0.0001 0.0023 7 6 6.4442 1.7676 -0.0068 8 6 7.9645 1.9400 -0.0060 9 8 8.2859 3.3323 -0.0126 10 6 9.6887 3.6050 -0.0130 11 6 9.9107 5.0955 -0.0207 12 1 9.0651 5.7675 -0.0254 13 6 11.1932 5.6015 -0.0219 14 7 12.2229 4.7834 -0.0168 15 14 11.4684 7.4492 -0.0308 16 1 10.8477 8.0478 1.1780 17 1 12.9261 7.7325 -0.0314 18 1 10.8501 8.0358 -1.2469 19 6 3.5777 -1.2024 0.0069 20 6 2.1967 -1.1985 0.0058 21 6 1.4405 -2.5019 0.0128 22 1 -0.3634 0.0054 1.0276 23 1 -0.3633 0.8873 -0.5185 24 1 -0.3633 -0.8927 -0.5092 25 1 1.6549 2.1331 -0.0004 26 1 4.1156 2.1392 -0.0099 27 1 6.0259 2.2324 -0.8995 28 1 6.0247 2.2419 0.8804 29 1 8.3824 1.4752 0.8869 30 1 8.3844 1.4656 -0.8929 31 1 10.1427 3.1743 0.8795 32 1 10.1440 3.1656 -0.9004 33 1 13.1252 5.1393 -0.0180 34 1 4.1158 -2.1388 0.0123 35 1 1.2574 -2.8103 1.0421 36 1 0.4887 -2.3725 -0.5025 37 1 2.0282 -3.2658 -0.4962 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292660313.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:43 Heat of formation + Delta-G solvation = -59.636266 kcal Electronic energy + Delta-G solvation = -16589.968542 eV Core-core repulsion = 13843.024527 eV Total energy + Delta-G solvation = -2746.944015 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.41431 -38.81114 -35.07275 -34.45900 -33.14009 -32.55541 -29.25249 -28.51422 -27.46943 -24.71154 -24.12647 -22.90425 -21.98950 -18.75654 -18.13757 -17.75815 -17.14087 -16.75751 -16.65841 -16.29631 -15.32304 -15.27387 -15.25034 -14.89080 -14.21955 -14.17207 -13.77821 -13.57378 -13.55573 -13.25641 -13.00425 -12.90790 -12.68613 -12.59678 -12.55327 -12.21141 -12.06680 -11.83900 -11.38466 -11.25386 -10.94290 -10.42626 -10.36299 -9.74119 -8.42459 -8.35399 -6.48950 0.18173 0.29100 0.35484 1.30107 1.39279 1.44088 1.52706 2.32885 2.63447 2.98469 3.12132 3.72904 3.79504 3.90916 3.93249 4.02375 4.22760 4.27910 4.31264 4.54230 4.54835 4.60753 4.73126 4.78088 4.81588 4.83627 4.95611 4.98583 5.10048 5.18308 5.27090 5.30068 5.40798 5.49959 5.67739 5.88979 5.99494 6.41168 6.71974 7.22603 8.76766 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.045201 B = 0.002841 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.310804 B = 9853.666567 C =10436.624884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.098 4.098 3 C -0.104 4.104 4 C -0.151 4.151 5 C -0.099 4.099 6 S -0.115 6.115 7 C -0.093 4.093 8 C 0.075 3.925 9 O -0.405 6.405 10 C 0.209 3.791 11 C -0.553 4.553 12 H 0.064 0.936 13 C 0.007 3.993 14 N -0.930 5.930 15 Si 0.986 3.014 16 H -0.264 1.264 17 H -0.274 1.274 18 H -0.265 1.265 19 C -0.110 4.110 20 C -0.075 4.075 21 C -0.115 4.115 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.143 0.857 26 H 0.122 0.878 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.051 0.949 30 H 0.051 0.949 31 H -0.010 1.010 32 H -0.010 1.010 33 H 0.272 0.728 34 H 0.134 0.866 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.829 -12.914 0.073 27.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.101 4.101 3 C -0.124 4.124 4 C -0.175 4.175 5 C -0.212 4.212 6 S 0.128 5.872 7 C -0.241 4.241 8 C -0.003 4.003 9 O -0.325 6.325 10 C 0.134 3.866 11 C -0.591 4.591 12 H 0.082 0.918 13 C -0.192 4.192 14 N -0.568 5.568 15 Si 0.808 3.192 16 H -0.189 1.189 17 H -0.199 1.199 18 H -0.189 1.189 19 C -0.133 4.133 20 C -0.077 4.077 21 C -0.171 4.171 22 H 0.098 0.902 23 H 0.092 0.908 24 H 0.103 0.897 25 H 0.161 0.839 26 H 0.140 0.860 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.008 0.992 32 H 0.008 0.992 33 H 0.081 0.919 34 H 0.151 0.849 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -22.874 -13.661 0.077 26.643 hybrid contribution 0.236 1.660 0.010 1.677 sum -22.638 -12.000 0.087 25.622 Atomic orbital electron populations 1.20913 0.88811 1.04002 1.03285 1.20195 0.97807 0.92089 1.00002 1.21218 0.92989 0.99035 0.99156 1.21354 0.95881 0.96542 1.03696 1.21809 0.95715 0.97392 1.06252 1.85259 1.00562 1.08668 1.92680 1.23364 0.98435 0.95457 1.06825 1.21977 0.93262 0.84268 1.00824 1.87787 1.26817 1.22605 1.95328 1.19908 0.76392 0.96414 0.93936 1.21349 0.93223 0.91642 1.52858 0.91764 1.25997 0.94794 1.04700 0.93733 1.70058 0.99280 1.37432 1.50079 0.85195 0.77457 0.77089 0.79446 1.18914 1.19902 1.18922 1.20810 0.94143 0.96141 1.02255 1.20038 0.92548 0.96657 0.98475 1.20935 1.00438 0.92310 1.03458 0.90155 0.90806 0.89711 0.83940 0.85990 0.88471 0.88479 0.93047 0.93040 0.99196 0.99199 0.91887 0.84861 0.89959 0.89379 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.60 71.24 0.68 -0.52 16 2 C -0.10 -1.73 5.88 -19.83 -0.12 -1.84 16 3 C -0.10 -2.11 9.69 22.25 0.22 -1.90 16 4 C -0.15 -3.73 9.36 22.41 0.21 -3.52 16 5 C -0.10 -2.58 6.11 22.63 0.14 -2.44 16 6 S -0.12 -3.28 21.92 -56.49 -1.24 -4.52 16 7 C -0.09 -2.93 4.70 71.98 0.34 -2.59 16 8 C 0.07 2.92 5.95 71.98 0.43 3.35 16 9 O -0.40 -20.18 10.33 -148.98 -1.54 -21.72 16 10 C 0.21 11.91 5.69 71.23 0.41 12.32 16 11 C -0.55 -33.22 9.43 25.60 0.24 -32.98 16 12 H 0.06 3.79 7.81 -2.91 -0.02 3.76 16 13 C 0.01 0.38 5.46 84.65 0.46 0.84 16 14 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 15 Si 0.99 44.35 29.54 68.60 2.03 46.37 16 16 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 18 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 19 C -0.11 -2.44 9.45 22.41 0.21 -2.23 16 20 C -0.08 -1.37 5.88 -19.89 -0.12 -1.48 16 21 C -0.12 -1.28 9.60 71.23 0.68 -0.60 16 22 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.07 0.68 8.09 -2.38 -0.02 0.66 16 24 H 0.08 0.65 5.94 -2.39 -0.01 0.64 16 25 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 26 H 0.12 3.03 5.88 -2.91 -0.02 3.01 16 27 H 0.10 2.99 7.75 -2.39 -0.02 2.97 16 28 H 0.10 2.98 7.75 -2.39 -0.02 2.97 16 29 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 31 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 32 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 33 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 34 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.09 0.69 5.94 -2.38 -0.01 0.68 16 37 H 0.07 0.74 8.08 -2.39 -0.02 0.72 16 Total: -1.00 -67.31 323.71 4.36 -62.95 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: 1.04 Total: 6.38 kcal Atomic # 6 Polarization: -37.37 SS G_CDS: 3.78 Total: -33.59 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 0.28 Total: -55.88 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -1.54 Total: -21.72 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: -3.28 SS G_CDS: -1.24 Total: -4.52 kcal Total: -67.31 4.36 -62.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292660313.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.315 kcal (2) G-P(sol) polarization free energy of solvation -67.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds