Wall clock time and date at job start Mon Mar 30 2020 06:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38323 * 119.95983 * 2 1 4 4 C 1.38281 * 120.16110 * 179.97438 * 3 2 1 5 5 C 1.38103 * 120.07729 * 359.77140 * 4 3 2 6 6 C 1.50707 * 120.03762 * 180.25459 * 5 4 3 7 7 C 1.38954 * 119.92406 * 0.52650 * 5 4 3 8 8 S 1.76192 * 120.08266 * 179.72234 * 7 5 4 9 9 C 1.81404 * 102.99967 * 179.72681 * 8 7 5 10 10 C 1.53000 * 109.46946 * 180.02562 * 9 8 7 11 11 O 1.42903 * 109.46726 * 180.02562 * 10 9 8 12 12 C 1.42907 * 113.99838 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.46942 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00061 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99762 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99992 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 119.99936 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47074 * 89.99851 * 17 15 13 19 19 H 1.48498 * 109.47070 * 209.99784 * 17 15 13 20 20 H 1.48499 * 109.47373 * 330.00013 * 17 15 13 21 21 C 1.38067 * 119.96057 * 180.02562 * 2 1 3 22 22 H 1.09002 * 109.46801 * 269.97517 * 1 2 3 23 23 H 1.09000 * 109.47307 * 29.97530 * 1 2 3 24 24 H 1.08997 * 109.46928 * 149.97957 * 1 2 3 25 25 H 1.08001 * 119.91605 * 0.02562 * 3 2 1 26 26 H 1.07998 * 119.95688 * 180.02562 * 4 3 2 27 27 H 1.09007 * 109.46693 * 270.27275 * 6 5 4 28 28 H 1.08996 * 109.46789 * 30.27111 * 6 5 4 29 29 H 1.09000 * 109.47095 * 150.27665 * 6 5 4 30 30 H 1.09002 * 109.47124 * 60.00075 * 9 8 7 31 31 H 1.09001 * 109.46975 * 300.00196 * 9 8 7 32 32 H 1.09001 * 109.47194 * 299.99756 * 10 9 8 33 33 H 1.08992 * 109.47399 * 59.99928 * 10 9 8 34 34 H 1.09004 * 109.46885 * 300.00332 * 12 11 10 35 35 H 1.08996 * 109.46933 * 60.00042 * 12 11 10 36 36 H 0.97000 * 120.00168 * 180.02562 * 16 15 13 37 37 H 1.07999 * 120.03662 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1984 0.0000 4 6 3.5806 1.2033 0.0005 5 6 4.2770 0.0106 0.0058 6 6 5.7840 0.0170 0.0122 7 6 3.5865 -1.1952 -0.0004 8 16 4.4707 -2.7192 -0.0011 9 6 3.1466 -3.9592 -0.0016 10 6 3.7604 -5.3607 -0.0016 11 8 2.7173 -6.3374 -0.0026 12 6 3.1854 -7.6877 -0.0033 13 6 2.0075 -8.6276 -0.0050 14 1 1.0021 -8.2334 -0.0051 15 6 2.2136 -9.9910 -0.0053 16 7 1.1857 -10.8113 -0.0063 17 14 3.9527 -10.6728 -0.0044 18 1 4.4126 -10.8539 1.3960 19 1 3.9714 -11.9820 -0.7048 20 1 4.8566 -9.7244 -0.7034 21 6 2.1966 -1.1962 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3634 0.8902 -0.5134 24 1 -0.3633 -0.8898 -0.5141 25 1 1.6558 2.1325 0.0004 26 1 4.1166 2.1408 0.0010 27 1 6.1516 0.0214 -1.0140 28 1 6.1413 0.9071 0.5300 29 1 6.1489 -0.8729 0.5251 30 1 2.5302 -3.8321 -0.8916 31 1 2.5302 -3.8328 0.8884 32 1 4.3771 -5.4873 -0.8914 33 1 4.3765 -5.4875 0.8885 34 1 3.7904 -7.8620 -0.8931 35 1 3.7895 -7.8631 0.8868 36 1 1.3306 -11.7704 -0.0061 37 1 1.6565 -2.1314 -0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292781690.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:50 Heat of formation + Delta-G solvation = -40.445986 kcal Electronic energy + Delta-G solvation = -16827.939308 eV Core-core repulsion = 14081.827446 eV Total energy + Delta-G solvation = -2746.111862 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.52322 -37.14503 -34.09862 -32.84546 -31.67028 -30.84891 -29.44978 -27.75331 -25.06386 -23.13663 -23.07018 -21.92231 -20.83164 -17.06356 -16.87892 -16.24261 -15.82044 -15.67194 -15.61042 -14.58199 -14.40647 -14.33872 -13.67225 -13.51170 -13.37100 -13.00383 -12.97799 -12.68040 -12.49050 -12.11061 -11.92645 -11.70528 -11.49180 -11.27742 -11.05668 -10.83799 -10.74560 -10.17058 -9.90635 -9.78954 -9.26256 -8.96434 -8.75219 -8.56194 -7.46412 -6.16438 -4.16440 1.05127 1.15793 1.38055 2.35441 3.22092 3.29304 3.30467 3.46070 4.31422 4.56050 4.58273 4.61780 4.79735 4.97618 4.99819 5.10720 5.14842 5.27696 5.37277 5.40154 5.41413 5.44781 5.52607 5.58773 5.73989 5.77681 5.90929 5.95188 6.00229 6.08689 6.30134 6.39189 6.51777 6.75323 6.91631 7.51932 7.88585 8.57309 8.93625 9.41921 10.96414 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.031600 B = 0.003413 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.873295 B = 8203.094543 C = 9052.610662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.072 4.072 3 C -0.126 4.126 4 C -0.102 4.102 5 C -0.076 4.076 6 C -0.116 4.116 7 C -0.078 4.078 8 S -0.101 6.101 9 C -0.110 4.110 10 C 0.076 3.924 11 O -0.378 6.378 12 C 0.170 3.830 13 C -0.523 4.523 14 H 0.083 0.917 15 C 0.074 3.926 16 N -0.894 5.894 17 Si 0.876 3.124 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.266 1.266 21 C -0.129 4.129 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.122 0.878 26 H 0.125 0.875 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.006 0.994 35 H 0.001 0.999 36 H 0.267 0.733 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.048 24.601 0.016 25.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.074 4.074 3 C -0.147 4.147 4 C -0.122 4.122 5 C -0.082 4.082 6 C -0.173 4.173 7 C -0.191 4.191 8 S 0.144 5.856 9 C -0.258 4.258 10 C -0.002 4.002 11 O -0.298 6.298 12 C 0.095 3.905 13 C -0.560 4.560 14 H 0.101 0.899 15 C -0.129 4.129 16 N -0.532 5.532 17 Si 0.702 3.298 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.190 1.190 21 C -0.153 4.153 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.140 0.860 26 H 0.143 0.857 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.024 0.976 35 H 0.019 0.981 36 H 0.077 0.923 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.003 24.077 0.012 25.074 hybrid contribution -0.324 -0.330 0.023 0.463 sum 6.679 23.746 0.035 24.668 Atomic orbital electron populations 1.20819 0.90917 1.02982 1.02555 1.19820 0.96120 0.92687 0.98784 1.21015 0.94131 0.97421 1.02111 1.20927 0.94087 0.96985 1.00179 1.19513 0.96048 0.91218 1.01408 1.20793 0.90777 1.02975 1.02720 1.21643 0.96114 0.96527 1.04782 1.85236 1.13190 0.95351 1.91867 1.23621 0.99586 0.95850 1.06724 1.21836 0.91111 0.86738 1.00555 1.87903 1.30589 1.16082 1.95177 1.20654 0.96755 0.78433 0.94667 1.20864 0.93839 0.89672 1.51671 0.89908 1.24760 0.97197 0.96416 0.94500 1.69868 1.30003 1.03284 1.50023 0.86848 0.85053 0.78992 0.78873 1.19821 1.20662 1.19028 1.21164 0.92466 0.98725 1.02965 0.90973 0.91441 0.91266 0.85982 0.85696 0.90795 0.91282 0.90851 0.88622 0.88649 0.93224 0.93231 0.97639 0.98092 0.92254 0.85418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 10.01 36.01 0.36 -0.62 16 2 C -0.07 -0.77 5.88 -104.65 -0.62 -1.39 16 3 C -0.13 -1.21 9.70 -39.53 -0.38 -1.59 16 4 C -0.10 -0.99 9.70 -39.62 -0.38 -1.37 16 5 C -0.08 -0.84 5.90 -104.40 -0.62 -1.46 16 6 C -0.12 -1.05 9.57 36.01 0.34 -0.71 16 7 C -0.08 -0.99 6.11 -39.04 -0.24 -1.23 16 8 S -0.10 -1.34 20.13 -107.50 -2.16 -3.50 16 9 C -0.11 -1.63 4.70 37.16 0.17 -1.45 16 10 C 0.08 1.35 5.95 37.16 0.22 1.57 16 11 O -0.38 -8.76 10.33 -35.23 -0.36 -9.13 16 12 C 0.17 4.32 4.76 36.00 0.17 4.49 16 13 C -0.52 -15.52 9.99 -34.44 -0.34 -15.87 16 14 H 0.08 2.68 8.06 -52.49 -0.42 2.26 16 15 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 16 N -0.89 -27.47 13.96 55.43 0.77 -26.70 16 17 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 21 C -0.13 -1.60 9.02 -39.36 -0.35 -1.95 16 22 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 24 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 25 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 26 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 29 H 0.07 0.72 6.78 -51.93 -0.35 0.37 16 30 H 0.10 1.39 7.75 -51.92 -0.40 0.99 16 31 H 0.09 1.39 7.75 -51.92 -0.40 0.99 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.01 0.15 7.20 -51.93 -0.37 -0.23 16 35 H 0.00 0.03 7.57 -51.93 -0.39 -0.36 16 36 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.13 1.57 5.88 -52.49 -0.31 1.26 16 LS Contribution 321.62 15.07 4.85 4.85 Total: -1.00 -31.66 321.62 -8.96 -40.62 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -5.62 Total: -3.23 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -1.76 Total: -19.51 kcal Atomic # 7 Polarization: -27.47 SS G_CDS: 0.77 Total: -26.70 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.36 Total: -9.13 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Atomic # 16 Polarization: -1.34 SS G_CDS: -2.16 Total: -3.50 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.66 -8.96 -40.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292781690.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.175 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds