Wall clock time and date at job start Mon Mar 30 2020 06:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38323 * 119.95983 * 2 1 4 4 C 1.38281 * 120.16110 * 179.97438 * 3 2 1 5 5 C 1.38103 * 120.07729 * 359.77140 * 4 3 2 6 6 C 1.50707 * 120.03762 * 180.25459 * 5 4 3 7 7 C 1.38954 * 119.92406 * 0.52650 * 5 4 3 8 8 S 1.76192 * 120.08266 * 179.72234 * 7 5 4 9 9 C 1.81404 * 102.99967 * 179.72681 * 8 7 5 10 10 C 1.53000 * 109.46946 * 180.02562 * 9 8 7 11 11 O 1.42903 * 109.46726 * 180.02562 * 10 9 8 12 12 C 1.42907 * 113.99838 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.46942 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00061 * 359.97438 * 13 12 11 15 15 C 1.37884 * 119.99762 * 180.02562 * 13 12 11 16 16 N 1.31511 * 119.99992 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 119.99936 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47074 * 89.99851 * 17 15 13 19 19 H 1.48498 * 109.47070 * 209.99784 * 17 15 13 20 20 H 1.48499 * 109.47373 * 330.00013 * 17 15 13 21 21 C 1.38067 * 119.96057 * 180.02562 * 2 1 3 22 22 H 1.09002 * 109.46801 * 269.97517 * 1 2 3 23 23 H 1.09000 * 109.47307 * 29.97530 * 1 2 3 24 24 H 1.08997 * 109.46928 * 149.97957 * 1 2 3 25 25 H 1.08001 * 119.91605 * 0.02562 * 3 2 1 26 26 H 1.07998 * 119.95688 * 180.02562 * 4 3 2 27 27 H 1.09007 * 109.46693 * 270.27275 * 6 5 4 28 28 H 1.08996 * 109.46789 * 30.27111 * 6 5 4 29 29 H 1.09000 * 109.47095 * 150.27665 * 6 5 4 30 30 H 1.09002 * 109.47124 * 60.00075 * 9 8 7 31 31 H 1.09001 * 109.46975 * 300.00196 * 9 8 7 32 32 H 1.09001 * 109.47194 * 299.99756 * 10 9 8 33 33 H 1.08992 * 109.47399 * 59.99928 * 10 9 8 34 34 H 1.09004 * 109.46885 * 300.00332 * 12 11 10 35 35 H 1.08996 * 109.46933 * 60.00042 * 12 11 10 36 36 H 0.97000 * 120.00168 * 180.02562 * 16 15 13 37 37 H 1.07999 * 120.03662 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1984 0.0000 4 6 3.5806 1.2033 0.0005 5 6 4.2770 0.0106 0.0058 6 6 5.7840 0.0170 0.0122 7 6 3.5865 -1.1952 -0.0004 8 16 4.4707 -2.7192 -0.0011 9 6 3.1466 -3.9592 -0.0016 10 6 3.7604 -5.3607 -0.0016 11 8 2.7173 -6.3374 -0.0026 12 6 3.1854 -7.6877 -0.0033 13 6 2.0075 -8.6276 -0.0050 14 1 1.0021 -8.2334 -0.0051 15 6 2.2136 -9.9910 -0.0053 16 7 1.1857 -10.8113 -0.0063 17 14 3.9527 -10.6728 -0.0044 18 1 4.4126 -10.8539 1.3960 19 1 3.9714 -11.9820 -0.7048 20 1 4.8566 -9.7244 -0.7034 21 6 2.1966 -1.1962 -0.0005 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3634 0.8902 -0.5134 24 1 -0.3633 -0.8898 -0.5141 25 1 1.6558 2.1325 0.0004 26 1 4.1166 2.1408 0.0010 27 1 6.1516 0.0214 -1.0140 28 1 6.1413 0.9071 0.5300 29 1 6.1489 -0.8729 0.5251 30 1 2.5302 -3.8321 -0.8916 31 1 2.5302 -3.8328 0.8884 32 1 4.3771 -5.4873 -0.8914 33 1 4.3765 -5.4875 0.8885 34 1 3.7904 -7.8620 -0.8931 35 1 3.7895 -7.8631 0.8868 36 1 1.3306 -11.7704 -0.0061 37 1 1.6565 -2.1314 -0.0014 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292781690.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:50 Heat of formation + Delta-G solvation = -58.281559 kcal Electronic energy + Delta-G solvation = -16828.712717 eV Core-core repulsion = 14081.827446 eV Total energy + Delta-G solvation = -2746.885270 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.31572 -38.88949 -35.03004 -34.83031 -32.94278 -31.92692 -30.21830 -29.74923 -25.79029 -24.46911 -23.98812 -23.91685 -21.71152 -19.12486 -18.00698 -17.59813 -17.18036 -16.76080 -16.66576 -16.40913 -15.33351 -15.26543 -15.12597 -14.82636 -14.54875 -14.19816 -14.14027 -13.73929 -13.45031 -13.21437 -13.09074 -12.79767 -12.67223 -12.53882 -12.45401 -12.43813 -11.98006 -11.85191 -11.45638 -11.16033 -10.97461 -10.65352 -10.50634 -9.55689 -8.44136 -8.40880 -6.50040 0.21882 0.30362 0.35391 1.30693 1.32622 1.35518 1.46423 2.27082 2.65830 2.91657 3.03815 3.73583 3.80423 3.85793 3.89071 4.06043 4.24453 4.27867 4.37968 4.46991 4.54481 4.55607 4.67482 4.71563 4.76652 4.77728 4.82998 4.92830 4.95278 5.12055 5.27099 5.32234 5.36887 5.51951 5.60634 5.84668 5.99558 6.52673 6.61538 7.14199 8.76153 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.031600 B = 0.003413 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.873295 B = 8203.094543 C = 9052.610662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.084 4.084 3 C -0.124 4.124 4 C -0.102 4.102 5 C -0.086 4.086 6 C -0.115 4.115 7 C -0.102 4.102 8 S -0.092 6.092 9 C -0.106 4.106 10 C 0.072 3.928 11 O -0.404 6.404 12 C 0.179 3.821 13 C -0.551 4.551 14 H 0.031 0.969 15 C 0.015 3.985 16 N -0.940 5.940 17 Si 0.956 3.044 18 H -0.258 1.258 19 H -0.272 1.272 20 H -0.244 1.244 21 C -0.151 4.151 22 H 0.078 0.922 23 H 0.086 0.914 24 H 0.061 0.939 25 H 0.151 0.849 26 H 0.156 0.844 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.017 0.983 35 H 0.016 0.984 36 H 0.274 0.726 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.387 26.533 0.037 27.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.144 4.144 4 C -0.121 4.121 5 C -0.092 4.092 6 C -0.171 4.171 7 C -0.215 4.215 8 S 0.152 5.848 9 C -0.254 4.254 10 C -0.006 4.006 11 O -0.324 6.324 12 C 0.104 3.896 13 C -0.589 4.589 14 H 0.049 0.951 15 C -0.184 4.184 16 N -0.579 5.579 17 Si 0.776 3.224 18 H -0.182 1.182 19 H -0.197 1.197 20 H -0.168 1.168 21 C -0.174 4.174 22 H 0.096 0.904 23 H 0.105 0.895 24 H 0.080 0.920 25 H 0.169 0.831 26 H 0.173 0.827 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.035 0.965 35 H 0.034 0.966 36 H 0.084 0.916 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.330 26.043 0.034 27.664 hybrid contribution -1.168 -0.765 0.017 1.397 sum 8.161 25.277 0.051 26.562 Atomic orbital electron populations 1.20855 0.89627 1.03581 1.03114 1.20130 0.97275 0.92622 0.98504 1.21409 0.94473 0.98025 1.00509 1.21325 0.94339 0.97613 0.98819 1.19861 0.97201 0.91114 1.01035 1.20833 0.89484 1.03540 1.03287 1.21782 0.96371 0.96596 1.06702 1.85062 1.11986 0.95341 1.92415 1.23454 1.00307 0.95203 1.06414 1.22077 0.90318 0.86592 1.01621 1.87849 1.33143 1.16049 1.95383 1.20392 0.94809 0.78885 0.95559 1.21144 0.93323 0.91487 1.52936 0.95069 1.25846 1.02891 0.96383 0.93253 1.70021 1.33190 1.04037 1.50692 0.85607 0.78257 0.78578 0.79931 1.18230 1.19673 1.16784 1.21239 0.92690 0.99188 1.04314 0.90374 0.89510 0.92025 0.83145 0.82658 0.90166 0.89041 0.91908 0.89032 0.89039 0.92092 0.92008 0.96547 0.96623 0.91642 0.86543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 10.01 71.24 0.71 -1.11 16 2 C -0.08 -1.70 5.88 -19.88 -0.12 -1.82 16 3 C -0.12 -2.06 9.70 22.30 0.22 -1.84 16 4 C -0.10 -1.67 9.70 22.25 0.22 -1.46 16 5 C -0.09 -1.77 5.90 -19.72 -0.12 -1.89 16 6 C -0.11 -1.84 9.57 71.24 0.68 -1.16 16 7 C -0.10 -2.54 6.11 22.62 0.14 -2.40 16 8 S -0.09 -2.40 20.13 -56.49 -1.14 -3.54 16 9 C -0.11 -3.19 4.70 71.98 0.34 -2.85 16 10 C 0.07 2.52 5.95 71.98 0.43 2.95 16 11 O -0.40 -19.05 10.33 -148.98 -1.54 -20.59 16 12 C 0.18 9.06 4.76 71.23 0.34 9.40 16 13 C -0.55 -33.82 9.99 25.60 0.26 -33.57 16 14 H 0.03 2.15 8.06 -2.91 -0.02 2.13 16 15 C 0.01 0.87 5.47 84.66 0.46 1.33 16 16 N -0.94 -59.25 13.96 21.45 0.30 -58.95 16 17 Si 0.96 43.17 27.47 68.60 1.88 45.06 16 18 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 20 H -0.24 -10.16 6.54 99.48 0.65 -9.51 16 21 C -0.15 -3.74 9.02 22.41 0.20 -3.54 16 22 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.09 1.02 8.08 -2.39 -0.02 1.00 16 24 H 0.06 1.05 8.08 -2.39 -0.02 1.03 16 25 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 26 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 27 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.09 1.04 8.09 -2.39 -0.02 1.02 16 29 H 0.06 1.14 6.78 -2.39 -0.02 1.13 16 30 H 0.09 2.78 7.75 -2.39 -0.02 2.76 16 31 H 0.09 2.77 7.75 -2.39 -0.02 2.76 16 32 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 35 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 36 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 37 H 0.12 3.03 5.88 -2.91 -0.02 3.01 16 Total: -1.00 -70.38 321.62 4.25 -66.13 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.98 Total: 9.84 kcal Atomic # 6 Polarization: -41.70 SS G_CDS: 3.76 Total: -37.94 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: 0.30 Total: -58.95 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -1.54 Total: -20.59 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.88 Total: 45.06 kcal Atomic # 16 Polarization: -2.40 SS G_CDS: -1.14 Total: -3.54 kcal Total: -70.38 4.25 -66.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292781690.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.846 kcal (2) G-P(sol) polarization free energy of solvation -70.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds