Wall clock time and date at job start Mon Mar 30 2020 07:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47335 * 2 1 4 4 O 1.42897 * 109.47125 * 239.99722 * 2 1 3 5 5 C 1.53007 * 109.47299 * 119.99936 * 2 1 3 6 6 H 1.08999 * 109.46833 * 299.99907 * 5 2 1 7 7 C 1.52995 * 109.47299 * 179.97438 * 5 2 1 8 8 S 1.81392 * 109.46983 * 59.99632 * 5 2 1 9 9 C 1.81407 * 103.00096 * 185.00131 * 8 5 2 10 10 H 1.09001 * 109.46982 * 54.99968 * 9 8 5 11 11 C 1.50705 * 109.47041 * 295.00627 * 9 8 5 12 12 H 1.08002 * 119.99658 * 325.91971 * 11 9 8 13 13 C 1.37871 * 120.00020 * 145.92664 * 11 9 8 14 14 N 1.31517 * 119.99993 * 5.31318 * 13 11 9 15 15 Si 1.86796 * 119.99928 * 185.31282 * 13 11 9 16 16 H 1.48501 * 109.47289 * 89.99777 * 15 13 11 17 17 H 1.48500 * 109.47430 * 209.99922 * 15 13 11 18 18 H 1.48507 * 109.47311 * 330.00067 * 15 13 11 19 19 C 1.50692 * 109.47191 * 175.00140 * 9 8 5 20 20 C 1.38241 * 120.00025 * 59.11999 * 19 9 8 21 21 C 1.38234 * 119.99895 * 179.78773 * 20 19 9 22 22 C 1.38237 * 120.00142 * 0.43927 * 21 20 19 23 23 C 1.38240 * 119.99924 * 359.80830 * 22 21 20 24 24 C 1.38237 * 120.00010 * 239.38584 * 19 9 8 25 25 H 1.08999 * 109.47102 * 300.00322 * 1 2 3 26 26 H 1.08993 * 109.47181 * 59.99961 * 1 2 3 27 27 H 1.09005 * 109.47043 * 180.02562 * 1 2 3 28 28 H 0.96699 * 114.00164 * 299.99920 * 4 2 1 29 29 H 1.09004 * 109.47241 * 179.97438 * 7 5 2 30 30 H 1.08999 * 109.47102 * 299.99742 * 7 5 2 31 31 H 1.09005 * 109.47043 * 59.99646 * 7 5 2 32 32 H 0.96997 * 119.99905 * 179.97438 * 14 13 11 33 33 H 1.07996 * 119.99938 * 359.97438 * 20 19 9 34 34 H 1.08004 * 120.00098 * 180.26717 * 21 20 19 35 35 H 1.07999 * 120.00156 * 179.84145 * 22 21 20 36 36 H 1.07993 * 119.99970 * 180.02562 * 23 22 21 37 37 H 1.08001 * 120.00250 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0400 -0.7213 1.2493 6 1 1.6767 -0.2074 2.1392 7 6 3.5700 -0.7218 1.2490 8 16 1.4353 -2.4314 1.2493 9 6 2.0036 -3.0652 2.8513 10 1 1.6424 -2.4149 3.6481 11 6 3.5101 -3.0970 2.8731 12 1 4.0587 -3.3154 1.9688 13 6 4.1880 -2.8476 4.0475 14 7 3.5216 -2.6852 5.1696 15 14 6.0528 -2.7401 4.0447 16 1 6.4674 -1.3357 3.7976 17 1 6.5764 -3.1865 5.3607 18 1 6.5974 -3.6127 2.9735 19 6 1.4685 -4.4586 3.0587 20 6 1.7793 -5.4596 2.1573 21 6 1.2921 -6.7388 2.3500 22 6 0.4866 -7.0150 3.4390 23 6 0.1717 -6.0128 4.3375 24 6 0.6624 -4.7345 4.1472 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.7210 -1.5953 -1.2328 29 1 3.9333 -1.2353 2.1392 30 1 3.9329 -1.2360 0.3590 31 1 3.9337 0.3058 1.2487 32 1 3.9985 -2.5101 5.9959 33 1 2.4052 -5.2429 1.3043 34 1 1.5384 -7.5219 1.6481 35 1 0.1039 -8.0138 3.5881 36 1 -0.4572 -6.2286 5.1885 37 1 0.4164 -3.9516 4.8494 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300449372.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:20 Heat of formation + Delta-G solvation = -44.567256 kcal Electronic energy + Delta-G solvation = -18339.212012 eV Core-core repulsion = 15592.921439 eV Total energy + Delta-G solvation = -2746.290573 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.34648 -37.49237 -33.97790 -32.24625 -31.16053 -30.07030 -29.48407 -27.11411 -23.74525 -23.03903 -21.72327 -21.14387 -20.27409 -16.73264 -16.41610 -15.88632 -15.68280 -15.15579 -14.56523 -14.24556 -14.01560 -13.71972 -13.12561 -12.87799 -12.63490 -12.24956 -12.14061 -11.92438 -11.74569 -11.55296 -11.36753 -11.17581 -10.92622 -10.78571 -10.38265 -10.33552 -10.26355 -10.13542 -9.67327 -9.46051 -8.75155 -8.67986 -8.09714 -7.70209 -6.76874 -6.24666 -4.32214 2.11126 2.23381 2.89586 3.14752 3.23424 3.26463 3.73133 4.19676 4.72710 4.80074 5.02532 5.24057 5.36176 5.54435 5.61504 5.68952 5.79478 5.87120 5.96213 6.10508 6.20658 6.25015 6.36077 6.44050 6.46306 6.52498 6.73016 6.83096 6.84390 7.04680 7.25307 7.31170 7.34124 7.59672 7.66295 7.80097 7.93847 8.00807 8.66401 9.21108 10.71429 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.013465 B = 0.009361 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.934619 B = 2990.266794 C = 4422.445474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.122 3.878 3 H 0.096 0.904 4 O -0.562 6.562 5 C -0.064 4.064 6 H 0.079 0.921 7 C -0.160 4.160 8 S -0.338 6.338 9 C 0.135 3.865 10 H 0.077 0.923 11 C -0.497 4.497 12 H 0.074 0.926 13 C 0.071 3.929 14 N -0.872 5.872 15 Si 0.892 3.108 16 H -0.275 1.275 17 H -0.284 1.284 18 H -0.268 1.268 19 C -0.013 4.013 20 C -0.103 4.103 21 C -0.132 4.132 22 C -0.147 4.147 23 C -0.129 4.129 24 C -0.108 4.108 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.378 0.622 29 H 0.109 0.891 30 H 0.058 0.942 31 H 0.033 0.967 32 H 0.268 0.732 33 H 0.119 0.881 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.645 0.129 -4.348 6.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.062 3.938 3 H 0.114 0.886 4 O -0.369 6.369 5 C -0.193 4.193 6 H 0.097 0.903 7 C -0.218 4.218 8 S -0.105 6.105 9 C 0.009 3.991 10 H 0.095 0.905 11 C -0.537 4.537 12 H 0.092 0.908 13 C -0.136 4.136 14 N -0.508 5.508 15 Si 0.718 3.282 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.193 1.193 19 C -0.016 4.016 20 C -0.122 4.122 21 C -0.150 4.150 22 C -0.166 4.166 23 C -0.147 4.147 24 C -0.128 4.128 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.227 0.773 29 H 0.127 0.873 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.137 0.863 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.971 0.281 -5.094 7.123 hybrid contribution 1.462 0.114 1.425 2.045 sum -3.508 0.395 -3.670 5.092 Atomic orbital electron populations 1.22538 0.96526 1.03575 1.01654 1.21723 0.92727 0.95528 0.83857 0.88599 1.86442 1.77496 1.29557 1.43371 1.23510 1.00270 0.95096 1.00425 0.90279 1.22428 0.92785 1.00541 1.06077 1.85782 1.74776 1.13640 1.36336 1.19863 0.98004 0.91812 0.89445 0.90506 1.21166 0.88824 1.47736 0.95954 0.90809 1.25064 0.98930 0.94310 0.95342 1.69920 1.36148 1.45795 0.98903 0.86565 0.84816 0.78857 0.77916 1.20075 1.20977 1.19272 1.19998 0.92044 0.96375 0.93139 1.20976 0.99350 0.92309 0.99588 1.20980 0.99294 0.96639 0.98074 1.20846 1.01066 0.98361 0.96342 1.20953 1.01075 0.93626 0.99058 1.20982 0.97440 0.96392 0.97943 0.91899 0.92657 0.90795 0.77295 0.87272 0.92318 0.94765 0.92258 0.86347 0.87383 0.87565 0.87371 0.86683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.59 9.30 37.15 0.35 -2.25 16 2 C 0.12 1.92 3.38 -26.73 -0.09 1.83 16 3 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 4 O -0.56 -9.35 12.64 -35.23 -0.45 -9.80 16 5 C -0.06 -1.17 2.70 -26.73 -0.07 -1.24 16 6 H 0.08 1.49 8.14 -51.92 -0.42 1.07 16 7 C -0.16 -3.12 8.42 37.15 0.31 -2.81 16 8 S -0.34 -6.68 17.65 -107.50 -1.90 -8.58 16 9 C 0.13 3.09 2.47 -29.04 -0.07 3.02 16 10 H 0.08 1.95 7.15 -51.92 -0.37 1.58 16 11 C -0.50 -12.09 4.66 -34.44 -0.16 -12.26 16 12 H 0.07 1.84 7.62 -52.49 -0.40 1.44 16 13 C 0.07 1.77 5.10 -17.82 -0.09 1.68 16 14 N -0.87 -22.81 12.86 55.43 0.71 -22.10 16 15 Si 0.89 19.86 29.35 -169.99 -4.99 14.87 16 16 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 19 C -0.01 -0.28 4.77 -104.63 -0.50 -0.78 16 20 C -0.10 -2.12 8.88 -39.58 -0.35 -2.47 16 21 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 22 C -0.15 -2.55 10.05 -39.58 -0.40 -2.94 16 23 C -0.13 -2.35 10.05 -39.58 -0.40 -2.74 16 24 C -0.11 -2.25 9.67 -39.58 -0.38 -2.63 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.11 6.91 -51.93 -0.36 0.75 16 28 H 0.38 5.95 7.85 45.56 0.36 6.31 16 29 H 0.11 2.42 4.27 -51.93 -0.22 2.20 16 30 H 0.06 1.15 7.68 -51.93 -0.40 0.75 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 33 H 0.12 2.44 8.04 -52.49 -0.42 2.02 16 34 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 35 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.12 2.40 7.95 -52.49 -0.42 1.99 16 LS Contribution 313.98 15.07 4.73 4.73 Total: -1.00 -25.65 313.98 -8.89 -34.54 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -4.75 Total: 12.71 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: -2.25 Total: -26.37 kcal Atomic # 7 Polarization: -22.81 SS G_CDS: 0.71 Total: -22.10 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -0.45 Total: -9.80 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.99 Total: 14.87 kcal Atomic # 16 Polarization: -6.68 SS G_CDS: -1.90 Total: -8.58 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -25.65 -8.89 -34.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300449372.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.031 kcal (2) G-P(sol) polarization free energy of solvation -25.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds