Wall clock time and date at job start Mon Mar 30 2020 07:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47335 * 2 1 4 4 O 1.42897 * 109.47125 * 239.99722 * 2 1 3 5 5 C 1.53007 * 109.47299 * 119.99936 * 2 1 3 6 6 H 1.08999 * 109.46833 * 299.99907 * 5 2 1 7 7 C 1.52995 * 109.47299 * 179.97438 * 5 2 1 8 8 S 1.81392 * 109.46983 * 59.99632 * 5 2 1 9 9 C 1.81407 * 103.00096 * 185.00131 * 8 5 2 10 10 H 1.09001 * 109.46982 * 54.99968 * 9 8 5 11 11 C 1.50705 * 109.47041 * 295.00627 * 9 8 5 12 12 H 1.08002 * 119.99658 * 325.91971 * 11 9 8 13 13 C 1.37871 * 120.00020 * 145.92664 * 11 9 8 14 14 N 1.31517 * 119.99993 * 5.31318 * 13 11 9 15 15 Si 1.86796 * 119.99928 * 185.31282 * 13 11 9 16 16 H 1.48501 * 109.47289 * 89.99777 * 15 13 11 17 17 H 1.48500 * 109.47430 * 209.99922 * 15 13 11 18 18 H 1.48507 * 109.47311 * 330.00067 * 15 13 11 19 19 C 1.50692 * 109.47191 * 175.00140 * 9 8 5 20 20 C 1.38241 * 120.00025 * 59.11999 * 19 9 8 21 21 C 1.38234 * 119.99895 * 179.78773 * 20 19 9 22 22 C 1.38237 * 120.00142 * 0.43927 * 21 20 19 23 23 C 1.38240 * 119.99924 * 359.80830 * 22 21 20 24 24 C 1.38237 * 120.00010 * 239.38584 * 19 9 8 25 25 H 1.08999 * 109.47102 * 300.00322 * 1 2 3 26 26 H 1.08993 * 109.47181 * 59.99961 * 1 2 3 27 27 H 1.09005 * 109.47043 * 180.02562 * 1 2 3 28 28 H 0.96699 * 114.00164 * 299.99920 * 4 2 1 29 29 H 1.09004 * 109.47241 * 179.97438 * 7 5 2 30 30 H 1.08999 * 109.47102 * 299.99742 * 7 5 2 31 31 H 1.09005 * 109.47043 * 59.99646 * 7 5 2 32 32 H 0.96997 * 119.99905 * 179.97438 * 14 13 11 33 33 H 1.07996 * 119.99938 * 359.97438 * 20 19 9 34 34 H 1.08004 * 120.00098 * 180.26717 * 21 20 19 35 35 H 1.07999 * 120.00156 * 179.84145 * 22 21 20 36 36 H 1.07993 * 119.99970 * 180.02562 * 23 22 21 37 37 H 1.08001 * 120.00250 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0400 -0.7213 1.2493 6 1 1.6767 -0.2074 2.1392 7 6 3.5700 -0.7218 1.2490 8 16 1.4353 -2.4314 1.2493 9 6 2.0036 -3.0652 2.8513 10 1 1.6424 -2.4149 3.6481 11 6 3.5101 -3.0970 2.8731 12 1 4.0587 -3.3154 1.9688 13 6 4.1880 -2.8476 4.0475 14 7 3.5216 -2.6852 5.1696 15 14 6.0528 -2.7401 4.0447 16 1 6.4674 -1.3357 3.7976 17 1 6.5764 -3.1865 5.3607 18 1 6.5974 -3.6127 2.9735 19 6 1.4685 -4.4586 3.0587 20 6 1.7793 -5.4596 2.1573 21 6 1.2921 -6.7388 2.3500 22 6 0.4866 -7.0150 3.4390 23 6 0.1717 -6.0128 4.3375 24 6 0.6624 -4.7345 4.1472 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.7210 -1.5953 -1.2328 29 1 3.9333 -1.2353 2.1392 30 1 3.9329 -1.2360 0.3590 31 1 3.9337 0.3058 1.2487 32 1 3.9985 -2.5101 5.9959 33 1 2.4052 -5.2429 1.3043 34 1 1.5384 -7.5219 1.6481 35 1 0.1039 -8.0138 3.5881 36 1 -0.4572 -6.2286 5.1885 37 1 0.4164 -3.9516 4.8494 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300449372.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:19 Heat of formation + Delta-G solvation = -57.713244 kcal Electronic energy + Delta-G solvation = -18339.782065 eV Core-core repulsion = 15592.921439 eV Total energy + Delta-G solvation = -2746.860626 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.86274 -38.82549 -35.76248 -33.69161 -32.86124 -31.56573 -30.81578 -28.82180 -25.47044 -24.50977 -23.22965 -22.55995 -21.81238 -18.59004 -17.88047 -17.33702 -17.14402 -16.81187 -16.06021 -15.87721 -15.45646 -15.21509 -14.68528 -14.32228 -14.13236 -13.82107 -13.71004 -13.56546 -13.34392 -13.02322 -12.84003 -12.59647 -12.58639 -12.43632 -11.95897 -11.89981 -11.77549 -11.67499 -11.35971 -10.97160 -10.53456 -10.39997 -9.60136 -9.26280 -8.49836 -8.04736 -6.25621 0.58466 0.71931 1.33691 1.36087 1.39774 1.47303 2.04626 2.35904 3.11399 3.23067 3.46562 3.88369 4.06521 4.22105 4.28903 4.29489 4.40019 4.45068 4.51022 4.63336 4.82727 4.88408 4.92928 4.97401 5.04407 5.07470 5.23535 5.32890 5.34007 5.41172 5.59157 5.72549 5.77382 5.80798 5.93295 6.14139 6.36769 6.72536 6.73146 7.28867 8.81549 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.013465 B = 0.009361 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.934619 B = 2990.266794 C = 4422.445474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.126 3.874 3 H 0.114 0.886 4 O -0.568 6.568 5 C -0.065 4.065 6 H 0.071 0.929 7 C -0.156 4.156 8 S -0.316 6.316 9 C 0.134 3.866 10 H 0.041 0.959 11 C -0.491 4.491 12 H 0.063 0.937 13 C 0.031 3.969 14 N -0.904 5.904 15 Si 0.940 3.060 16 H -0.270 1.270 17 H -0.286 1.286 18 H -0.267 1.267 19 C -0.039 4.039 20 C -0.121 4.121 21 C -0.128 4.128 22 C -0.140 4.140 23 C -0.127 4.127 24 C -0.132 4.132 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.381 0.619 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.265 0.735 33 H 0.110 0.890 34 H 0.141 0.859 35 H 0.148 0.852 36 H 0.137 0.863 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.260 -0.783 -5.426 7.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.066 3.934 3 H 0.132 0.868 4 O -0.375 6.375 5 C -0.194 4.194 6 H 0.089 0.911 7 C -0.214 4.214 8 S -0.084 6.084 9 C 0.007 3.993 10 H 0.059 0.941 11 C -0.531 4.531 12 H 0.081 0.919 13 C -0.173 4.173 14 N -0.542 5.542 15 Si 0.765 3.235 16 H -0.195 1.195 17 H -0.212 1.212 18 H -0.192 1.192 19 C -0.042 4.042 20 C -0.140 4.140 21 C -0.146 4.146 22 C -0.158 4.158 23 C -0.145 4.145 24 C -0.152 4.152 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.230 0.770 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.158 0.842 35 H 0.165 0.835 36 H 0.155 0.845 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.581 -0.634 -6.186 8.355 hybrid contribution 1.571 0.374 1.697 2.343 sum -4.010 -0.260 -4.489 6.024 Atomic orbital electron populations 1.22468 0.94977 1.03173 1.03007 1.21791 0.93914 0.95662 0.82008 0.86839 1.86438 1.77787 1.29835 1.43469 1.23650 0.99643 0.94312 1.01816 0.91097 1.22296 0.93582 1.01183 1.04328 1.85570 1.74436 1.14642 1.33702 1.19677 0.97314 0.92359 0.89965 0.94081 1.21166 0.89668 1.46991 0.95287 0.91874 1.25606 1.01929 0.94548 0.95176 1.70026 1.37107 1.47842 0.99216 0.85820 0.81243 0.78912 0.77520 1.19541 1.21209 1.19180 1.20014 0.93643 0.96100 0.94444 1.21009 1.00227 0.93415 0.99390 1.21362 0.98284 0.96145 0.98816 1.21313 0.99639 0.99819 0.95010 1.21302 1.00555 0.92539 1.00097 1.21047 0.98694 0.97671 0.97788 0.91181 0.90681 0.92011 0.77012 0.90114 0.92703 0.92974 0.92583 0.87205 0.84167 0.83476 0.84481 0.88207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.65 9.30 71.98 0.67 -3.98 16 2 C 0.13 3.76 3.38 30.59 0.10 3.86 16 3 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 4 O -0.57 -17.96 12.64 -148.98 -1.88 -19.84 16 5 C -0.07 -2.37 2.70 30.59 0.08 -2.29 16 6 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 7 C -0.16 -6.05 8.42 71.98 0.61 -5.44 16 8 S -0.32 -12.65 17.65 -56.49 -1.00 -13.64 16 9 C 0.13 6.37 2.47 29.10 0.07 6.44 16 10 H 0.04 2.21 7.15 -2.39 -0.02 2.19 16 11 C -0.49 -24.69 4.66 25.60 0.12 -24.57 16 12 H 0.06 3.24 7.62 -2.91 -0.02 3.22 16 13 C 0.03 1.58 5.10 84.65 0.43 2.01 16 14 N -0.90 -49.19 12.86 21.45 0.28 -48.91 16 15 Si 0.94 41.55 29.35 68.60 2.01 43.56 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 17 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 C -0.04 -1.77 4.77 -19.87 -0.09 -1.86 16 20 C -0.12 -4.95 8.88 22.27 0.20 -4.75 16 21 C -0.13 -4.31 10.05 22.27 0.22 -4.09 16 22 C -0.14 -4.34 10.05 22.27 0.22 -4.11 16 23 C -0.13 -4.39 10.05 22.27 0.22 -4.16 16 24 C -0.13 -5.60 9.67 22.27 0.22 -5.39 16 25 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 1.76 6.91 -2.38 -0.02 1.75 16 28 H 0.38 11.50 7.85 -74.06 -0.58 10.92 16 29 H 0.08 3.65 4.27 -2.39 -0.01 3.64 16 30 H 0.05 2.13 7.68 -2.39 -0.02 2.12 16 31 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 33 H 0.11 4.56 8.04 -2.91 -0.02 4.54 16 34 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 35 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 36 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 37 H 0.10 4.40 7.95 -2.91 -0.02 4.38 16 Total: -1.00 -56.27 313.98 2.95 -53.32 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: 0.47 Total: 33.85 kcal Atomic # 6 Polarization: -51.40 SS G_CDS: 3.07 Total: -48.33 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.28 Total: -48.91 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -1.88 Total: -19.84 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.01 Total: 43.56 kcal Atomic # 16 Polarization: -12.65 SS G_CDS: -1.00 Total: -13.64 kcal Total: -56.27 2.95 -53.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300449372.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.392 kcal (2) G-P(sol) polarization free energy of solvation -56.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds