Wall clock time and date at job start Mon Mar 30 2020 07:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00072 * 2 1 4 4 H 1.48496 * 109.47419 * 240.00250 * 3 2 1 5 5 H 1.48507 * 109.47203 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47252 * 119.99988 * 3 2 1 7 7 C 1.37882 * 120.00494 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00632 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99501 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.46774 * 179.97438 * 9 7 2 11 11 C 1.33334 * 122.71010 * 85.02941 * 10 9 7 12 12 S 1.76161 * 108.09544 * 180.23912 * 11 10 9 13 13 C 1.70971 * 90.35785 * 359.65558 * 12 11 10 14 14 N 1.38610 * 124.94660 * 180.02562 * 13 12 11 15 15 C 1.47999 * 111.00004 * 129.03594 * 14 13 12 16 16 C 1.50441 * 112.82779 * 191.34179 * 15 14 13 17 17 C 1.54306 * 108.49939 * 93.72614 * 16 15 14 18 18 C 1.45877 * 112.18668 * 281.46416 * 17 16 15 19 19 C 1.54305 * 112.18597 * 61.12192 * 18 17 16 20 20 C 1.48000 * 111.00500 * 0.31090 * 14 13 12 21 21 N 1.29681 * 110.09928 * 0.34882 * 13 12 11 22 22 H 0.96993 * 120.00256 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46970 * 59.99911 * 9 7 2 24 24 H 1.09001 * 109.47139 * 300.00150 * 9 7 2 25 25 H 1.08002 * 125.94795 * 359.96820 * 11 10 9 26 26 H 1.08997 * 108.80817 * 312.20461 * 15 14 13 27 27 H 1.09003 * 108.81528 * 70.47881 * 15 14 13 28 28 H 1.09000 * 109.63262 * 334.01985 * 16 15 14 29 29 H 1.09000 * 109.63216 * 213.42543 * 16 15 14 30 30 H 1.09003 * 108.94029 * 160.76643 * 17 16 15 31 31 H 1.09003 * 108.94413 * 42.16008 * 17 16 15 32 32 H 1.09004 * 108.93841 * 300.42310 * 18 17 16 33 33 H 1.08996 * 108.94244 * 181.81928 * 18 17 16 34 34 H 1.08997 * 109.63324 * 161.76397 * 19 18 17 35 35 H 1.09003 * 109.63383 * 41.16325 * 19 18 17 36 36 H 1.09000 * 108.81127 * 205.70432 * 20 14 13 37 37 H 1.08999 * 108.81091 * 323.97648 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2305 -3.6445 -0.0027 11 6 2.7726 -4.1300 1.1145 12 16 3.8564 -5.4456 0.6699 13 6 3.4676 -5.2227 -0.9800 14 7 3.9873 -5.9690 -2.0260 15 6 2.9076 -6.4871 -2.8956 16 6 3.3933 -7.5179 -3.8778 17 6 3.1875 -8.9173 -3.2609 18 6 4.2195 -9.2457 -2.2837 19 6 4.2310 -8.2615 -1.0953 20 6 4.9259 -6.9991 -1.5278 21 7 2.6209 -4.2492 -1.1107 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5563 -0.8920 24 1 0.6241 -2.5575 0.8880 25 1 2.5838 -3.7752 2.1170 26 1 2.1361 -6.9346 -2.2691 27 1 2.4704 -5.6547 -3.4471 28 1 4.4523 -7.3595 -4.0813 29 1 2.8236 -7.4386 -4.8037 30 1 3.2049 -9.6611 -4.0575 31 1 2.2140 -8.9485 -2.7714 32 1 5.1925 -9.2193 -2.7743 33 1 4.0424 -10.2530 -1.9070 34 1 4.7674 -8.7059 -0.2569 35 1 3.2072 -8.0330 -0.7991 36 1 5.6344 -7.2415 -2.3197 37 1 5.4760 -6.5924 -0.6793 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304258139.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:07 Heat of formation + Delta-G solvation = 39.375108 kcal Electronic energy + Delta-G solvation = -18065.981724 eV Core-core repulsion = 15355.623916 eV Total energy + Delta-G solvation = -2710.357808 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.04681 -38.53011 -34.84411 -32.99367 -32.40588 -30.18920 -27.45770 -26.75666 -25.25697 -23.94918 -22.35130 -20.74418 -19.94132 -19.01150 -17.52573 -16.32651 -16.10654 -15.71635 -15.27118 -14.57371 -14.51427 -13.99123 -13.57014 -13.36132 -13.04589 -12.67381 -12.53211 -12.39378 -12.04108 -11.74682 -11.46409 -11.23595 -11.03472 -10.89745 -10.79532 -10.67005 -10.47912 -10.38449 -9.76240 -9.64183 -9.27637 -8.85603 -8.49473 -8.38301 -7.42595 -6.00891 -4.03490 1.45380 1.80888 2.37459 3.35982 3.39021 3.41212 3.43737 3.77312 4.40121 4.47361 4.49783 4.72119 4.85124 4.96388 5.15670 5.20103 5.31723 5.35801 5.44248 5.52705 5.62577 5.74091 5.83358 5.85769 5.90713 6.03784 6.09480 6.14497 6.15293 6.43225 6.73839 6.83297 7.21534 7.52523 7.61146 7.94710 8.33063 8.66593 8.98897 9.59026 11.09527 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034043 B = 0.004587 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.301281 B = 6102.974800 C = 6421.667517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.055 0.945 9 C 0.085 3.915 10 C 0.134 3.866 11 C -0.282 4.282 12 S 0.024 5.976 13 C 0.230 3.770 14 N -0.453 5.453 15 C 0.073 3.927 16 C -0.122 4.122 17 C -0.124 4.124 18 C -0.116 4.116 19 C -0.150 4.150 20 C 0.052 3.948 21 N -0.485 5.485 22 H 0.263 0.737 23 H 0.038 0.962 24 H 0.037 0.963 25 H 0.170 0.830 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.279 -19.124 -3.397 21.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.547 4.547 8 H 0.073 0.927 9 C 0.045 3.955 10 C 0.005 3.995 11 C -0.420 4.420 12 S 0.272 5.728 13 C -0.141 4.141 14 N -0.174 5.174 15 C -0.054 4.054 16 C -0.160 4.160 17 C -0.162 4.162 18 C -0.154 4.154 19 C -0.189 4.189 20 C -0.075 4.075 21 N -0.204 5.204 22 H 0.072 0.928 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.187 0.813 26 H 0.064 0.936 27 H 0.108 0.892 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.857 -19.269 -3.708 21.529 hybrid contribution -0.409 1.290 0.480 1.436 sum 8.448 -17.979 -3.229 20.126 Atomic orbital electron populations 1.69939 1.05987 1.26954 1.50515 1.24962 0.94888 0.99164 0.95167 0.86563 0.79509 0.82698 0.78721 1.20163 1.21184 1.20192 1.20944 0.92956 0.89720 1.51034 0.92664 1.17996 0.91358 0.87330 0.98806 1.21011 0.97568 0.96210 0.84712 1.26399 1.06390 1.04948 1.04234 1.83507 1.48712 1.36661 1.03941 1.25219 0.98638 0.97764 0.92458 1.58322 1.19054 1.24399 1.15623 1.21876 0.90773 0.98567 0.94180 1.21499 1.02854 0.93475 0.98139 1.20649 0.99643 0.97171 0.98722 1.20559 0.99851 0.98968 0.96013 1.21961 1.02167 0.96143 0.98628 1.22158 0.94615 0.89852 1.00857 1.66385 1.14784 1.07149 1.32123 0.92761 0.94383 0.94456 0.81306 0.93616 0.89188 0.90474 0.90370 0.91875 0.92048 0.91807 0.92036 0.90398 0.91115 0.88986 0.90234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.51 -14.82 9.09 -34.44 -0.31 -15.14 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.08 2.30 5.38 -29.03 -0.16 2.15 16 10 C 0.13 3.18 5.93 -84.18 -0.50 2.68 16 11 C -0.28 -5.78 11.11 29.02 0.32 -5.46 16 12 S 0.02 0.39 20.52 -107.50 -2.21 -1.81 16 13 C 0.23 4.26 6.61 -87.69 -0.58 3.68 16 14 N -0.45 -6.82 4.75 -176.59 -0.84 -7.66 16 15 C 0.07 0.97 4.75 -4.50 -0.02 0.95 16 16 C -0.12 -1.17 5.63 -27.33 -0.15 -1.32 16 17 C -0.12 -1.02 5.30 -29.42 -0.16 -1.18 16 18 C -0.12 -0.90 5.30 -29.42 -0.16 -1.06 16 19 C -0.15 -1.43 5.26 -27.32 -0.14 -1.57 16 20 C 0.05 0.59 4.69 -4.49 -0.02 0.57 16 21 N -0.48 -10.98 10.33 -11.36 -0.12 -11.10 16 22 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 23 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.17 3.22 8.06 -52.49 -0.42 2.80 16 26 H 0.05 0.64 6.46 -51.93 -0.34 0.30 16 27 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.08 0.73 7.08 -51.93 -0.37 0.36 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.55 7.52 -51.93 -0.39 0.16 16 32 H 0.06 0.45 7.52 -51.93 -0.39 0.06 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.81 6.93 -51.93 -0.36 0.45 16 36 H 0.09 0.88 6.59 -51.93 -0.34 0.54 16 37 H 0.08 0.93 6.36 -51.90 -0.33 0.60 16 LS Contribution 303.81 15.07 4.58 4.58 Total: -1.00 -31.66 303.81 -10.28 -41.95 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -5.44 Total: -2.86 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -1.97 Total: -14.06 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: -0.22 Total: -44.92 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 0.39 SS G_CDS: -2.21 Total: -1.81 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.66 -10.28 -41.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304258139.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.320 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds