Wall clock time and date at job start Mon Mar 30 2020 07:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00072 * 2 1 4 4 H 1.48496 * 109.47419 * 240.00250 * 3 2 1 5 5 H 1.48507 * 109.47203 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47252 * 119.99988 * 3 2 1 7 7 C 1.37882 * 120.00494 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00632 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99501 * 0.02562 * 7 2 1 10 10 C 1.50696 * 109.46774 * 179.97438 * 9 7 2 11 11 C 1.33334 * 122.71010 * 85.02941 * 10 9 7 12 12 S 1.76161 * 108.09544 * 180.23912 * 11 10 9 13 13 C 1.70971 * 90.35785 * 359.65558 * 12 11 10 14 14 N 1.38610 * 124.94660 * 180.02562 * 13 12 11 15 15 C 1.47999 * 111.00004 * 129.03594 * 14 13 12 16 16 C 1.50441 * 112.82779 * 191.34179 * 15 14 13 17 17 C 1.54306 * 108.49939 * 93.72614 * 16 15 14 18 18 C 1.45877 * 112.18668 * 281.46416 * 17 16 15 19 19 C 1.54305 * 112.18597 * 61.12192 * 18 17 16 20 20 C 1.48000 * 111.00500 * 0.31090 * 14 13 12 21 21 N 1.29681 * 110.09928 * 0.34882 * 13 12 11 22 22 H 0.96993 * 120.00256 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46970 * 59.99911 * 9 7 2 24 24 H 1.09001 * 109.47139 * 300.00150 * 9 7 2 25 25 H 1.08002 * 125.94795 * 359.96820 * 11 10 9 26 26 H 1.08997 * 108.80817 * 312.20461 * 15 14 13 27 27 H 1.09003 * 108.81528 * 70.47881 * 15 14 13 28 28 H 1.09000 * 109.63262 * 334.01985 * 16 15 14 29 29 H 1.09000 * 109.63216 * 213.42543 * 16 15 14 30 30 H 1.09003 * 108.94029 * 160.76643 * 17 16 15 31 31 H 1.09003 * 108.94413 * 42.16008 * 17 16 15 32 32 H 1.09004 * 108.93841 * 300.42310 * 18 17 16 33 33 H 1.08996 * 108.94244 * 181.81928 * 18 17 16 34 34 H 1.08997 * 109.63324 * 161.76397 * 19 18 17 35 35 H 1.09003 * 109.63383 * 41.16325 * 19 18 17 36 36 H 1.09000 * 108.81127 * 205.70432 * 20 14 13 37 37 H 1.08999 * 108.81091 * 323.97648 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2305 -3.6445 -0.0027 11 6 2.7726 -4.1300 1.1145 12 16 3.8564 -5.4456 0.6699 13 6 3.4676 -5.2227 -0.9800 14 7 3.9873 -5.9690 -2.0260 15 6 2.9076 -6.4871 -2.8956 16 6 3.3933 -7.5179 -3.8778 17 6 3.1875 -8.9173 -3.2609 18 6 4.2195 -9.2457 -2.2837 19 6 4.2310 -8.2615 -1.0953 20 6 4.9259 -6.9991 -1.5278 21 7 2.6209 -4.2492 -1.1107 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5563 -0.8920 24 1 0.6241 -2.5575 0.8880 25 1 2.5838 -3.7752 2.1170 26 1 2.1361 -6.9346 -2.2691 27 1 2.4704 -5.6547 -3.4471 28 1 4.4523 -7.3595 -4.0813 29 1 2.8236 -7.4386 -4.8037 30 1 3.2049 -9.6611 -4.0575 31 1 2.2140 -8.9485 -2.7714 32 1 5.1925 -9.2193 -2.7743 33 1 4.0424 -10.2530 -1.9070 34 1 4.7674 -8.7059 -0.2569 35 1 3.2072 -8.0330 -0.7991 36 1 5.6344 -7.2415 -2.3197 37 1 5.4760 -6.5924 -0.6793 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304258139.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:07 Heat of formation + Delta-G solvation = 19.569875 kcal Electronic energy + Delta-G solvation = -18066.840544 eV Core-core repulsion = 15355.623916 eV Total energy + Delta-G solvation = -2711.216628 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.26671 -39.86909 -35.97946 -35.03980 -33.26960 -31.98755 -29.20057 -27.93497 -26.15074 -25.84205 -23.91224 -21.48932 -21.02997 -20.51818 -18.88053 -18.55325 -17.43234 -16.69922 -16.63795 -16.34155 -15.67319 -15.09456 -14.80674 -14.49211 -14.23846 -14.16325 -13.99543 -13.69977 -13.44973 -13.23993 -12.98867 -12.70037 -12.59420 -12.33319 -12.05867 -11.68393 -11.65349 -11.52330 -11.48946 -11.18743 -10.87642 -10.63449 -10.38337 -9.97147 -8.88463 -8.22747 -6.36119 -0.06367 0.36278 0.81060 1.37403 1.41560 1.49573 1.97718 2.30236 2.43580 3.08050 3.62042 3.67280 3.84525 3.96045 4.04866 4.20359 4.33391 4.45462 4.50950 4.57502 4.68135 4.71503 4.78078 4.93054 5.01296 5.13165 5.18308 5.23025 5.26222 5.31615 5.33149 5.40865 5.47541 5.68067 5.74411 5.79487 6.11648 6.71976 7.08316 7.31314 8.86991 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034043 B = 0.004587 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.301281 B = 6102.974800 C = 6421.667517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.048 0.952 9 C 0.095 3.905 10 C 0.105 3.895 11 C -0.300 4.300 12 S 0.126 5.874 13 C 0.225 3.775 14 N -0.461 5.461 15 C 0.078 3.922 16 C -0.115 4.115 17 C -0.121 4.121 18 C -0.114 4.114 19 C -0.149 4.149 20 C 0.047 3.953 21 N -0.536 5.536 22 H 0.268 0.732 23 H 0.001 0.999 24 H 0.021 0.979 25 H 0.177 0.823 26 H 0.036 0.964 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.049 0.951 36 H 0.118 0.882 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.857 -20.933 -3.444 23.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.793 3.207 4 H -0.199 1.199 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.567 4.567 8 H 0.066 0.934 9 C 0.055 3.945 10 C -0.025 4.025 11 C -0.438 4.438 12 S 0.375 5.625 13 C -0.145 4.145 14 N -0.182 5.182 15 C -0.049 4.049 16 C -0.152 4.152 17 C -0.159 4.159 18 C -0.151 4.151 19 C -0.187 4.187 20 C -0.078 4.078 21 N -0.258 5.258 22 H 0.077 0.923 23 H 0.019 0.981 24 H 0.039 0.961 25 H 0.194 0.806 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.067 0.933 36 H 0.136 0.864 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.454 -21.119 -3.753 24.316 hybrid contribution -1.155 1.719 0.454 2.120 sum 10.300 -19.400 -3.298 22.211 Atomic orbital electron populations 1.70060 1.07594 1.28209 1.50860 1.25896 0.95832 1.03017 0.94296 0.85449 0.78317 0.77892 0.79075 1.19860 1.19986 1.18864 1.21193 0.92738 0.91133 1.51662 0.93397 1.17633 0.91695 0.89033 0.96145 1.20471 0.98761 0.96731 0.86514 1.26609 1.07080 1.06346 1.03815 1.82988 1.45693 1.32994 1.00807 1.25677 0.97136 0.96966 0.94704 1.58390 1.19355 1.25649 1.14847 1.21881 0.90430 0.98366 0.94222 1.21500 1.03268 0.93103 0.97376 1.20634 0.99374 0.96432 0.99421 1.20558 1.00426 0.99014 0.95097 1.21968 1.00796 0.95735 1.00248 1.22419 0.94154 0.89581 1.01687 1.66267 1.17506 1.09445 1.32544 0.92342 0.98061 0.96094 0.80568 0.94569 0.92205 0.89626 0.89385 0.89817 0.93156 0.90185 0.90563 0.88469 0.93255 0.86408 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 2 C 0.01 0.48 5.46 84.66 0.46 0.94 16 3 Si 0.97 45.97 29.54 68.60 2.03 48.00 16 4 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.53 -32.17 9.09 25.60 0.23 -31.94 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 9 C 0.09 5.50 5.38 29.10 0.16 5.65 16 10 C 0.10 5.21 5.93 41.40 0.25 5.46 16 11 C -0.30 -12.47 11.11 66.71 0.74 -11.73 16 12 S 0.13 3.98 20.52 -56.49 -1.16 2.82 16 13 C 0.23 8.34 6.61 179.32 1.18 9.53 16 14 N -0.46 -13.46 4.75 -712.60 -3.39 -16.85 16 15 C 0.08 2.07 4.75 85.26 0.40 2.48 16 16 C -0.11 -1.97 5.63 30.21 0.17 -1.80 16 17 C -0.12 -1.64 5.30 28.85 0.15 -1.48 16 18 C -0.11 -1.32 5.30 28.85 0.15 -1.17 16 19 C -0.15 -2.36 5.26 30.21 0.16 -2.20 16 20 C 0.05 0.94 4.69 85.27 0.40 1.34 16 21 N -0.54 -25.34 10.33 -189.86 -1.96 -27.30 16 22 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 23 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 24 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.18 6.82 8.06 -2.91 -0.02 6.80 16 26 H 0.04 1.03 6.46 -2.39 -0.02 1.01 16 27 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.09 1.35 7.08 -2.39 -0.02 1.34 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.81 7.52 -2.39 -0.02 0.79 16 32 H 0.08 0.72 7.52 -2.38 -0.02 0.71 16 33 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.05 1.02 6.93 -2.39 -0.02 1.01 16 36 H 0.12 1.77 6.59 -2.39 -0.02 1.76 16 37 H 0.08 1.55 6.36 -2.41 -0.02 1.54 16 Total: -1.00 -72.07 303.81 1.32 -70.75 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: 1.05 Total: 4.72 kcal Atomic # 6 Polarization: -29.39 SS G_CDS: 4.46 Total: -24.92 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -5.06 Total: -101.37 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -1.16 Total: 2.82 kcal Total: -72.07 1.32 -70.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304258139.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.320 kcal (2) G-P(sol) polarization free energy of solvation -72.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds