Wall clock time and date at job start Mon Mar 30 2020 06:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46907 * 2 1 4 4 C 1.33390 * 125.20356 * 89.99852 * 3 2 1 5 5 C 1.38428 * 114.92002 * 179.74487 * 4 3 2 6 6 C 1.33391 * 114.92011 * 0.43499 * 5 4 3 7 7 C 1.50697 * 125.20371 * 179.85680 * 6 5 4 8 8 C 1.53008 * 109.99009 * 89.34527 * 7 6 5 9 9 C 1.54097 * 109.88030 * 210.43162 * 7 6 5 10 10 C 1.54811 * 104.18723 * 121.45621 * 9 7 6 11 11 C 1.54994 * 102.09418 * 20.88054 * 10 9 7 12 12 H 1.08998 * 110.75263 * 81.54397 * 11 10 9 13 13 C 1.50701 * 110.61786 * 204.48039 * 11 10 9 14 14 H 1.08002 * 119.99761 * 355.51702 * 13 11 10 15 15 C 1.37871 * 119.99694 * 175.80265 * 13 11 10 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 11 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 11 18 18 H 1.48504 * 109.47209 * 89.99886 * 17 15 13 19 19 H 1.48501 * 109.47358 * 209.99377 * 17 15 13 20 20 H 1.48496 * 109.47341 * 329.99989 * 17 15 13 21 21 O 1.43746 * 109.87786 * 328.26646 * 7 6 5 22 22 S 1.75888 * 109.59503 * 359.58860 * 6 5 4 23 23 H 1.09000 * 109.46895 * 59.99870 * 1 2 3 24 24 H 1.08993 * 109.47405 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47358 * 300.00509 * 1 2 3 26 26 H 1.08992 * 109.46982 * 239.99772 * 2 1 3 27 27 H 1.09003 * 109.46763 * 119.99619 * 2 1 3 28 28 H 1.07994 * 122.53820 * 359.97438 * 4 3 2 29 29 H 1.07995 * 122.54100 * 180.27428 * 5 4 3 30 30 H 1.08994 * 109.47190 * 300.37075 * 8 7 6 31 31 H 1.09000 * 109.46810 * 60.37024 * 8 7 6 32 32 H 1.08995 * 109.46929 * 180.36704 * 8 7 6 33 33 H 1.09009 * 110.48721 * 240.13151 * 9 7 6 34 34 H 1.08998 * 110.49006 * 2.64363 * 9 7 6 35 35 H 1.09001 * 110.90205 * 262.68344 * 10 9 7 36 36 H 1.08998 * 110.90854 * 139.08123 * 10 9 7 37 37 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2886 2.1458 1.0899 5 6 2.7478 3.4281 0.8428 6 6 2.8558 3.7475 -0.4478 7 6 3.3274 5.0773 -0.9772 8 6 4.8474 5.0616 -1.1516 9 6 2.6479 5.3743 -2.3280 10 6 1.9052 6.7122 -2.0930 11 6 2.6600 7.2922 -0.8699 12 1 3.5819 7.7829 -1.1821 13 6 1.7809 8.2519 -0.1101 14 1 0.8006 8.5014 -0.4884 15 6 2.2305 8.8158 1.0650 16 7 3.4242 8.5119 1.5257 17 14 1.1440 10.0113 2.0028 18 1 0.3061 9.2621 2.9733 19 1 1.9946 10.9857 2.7323 20 1 0.2673 10.7366 1.0485 21 8 2.9505 6.1262 -0.0694 22 16 2.3710 2.3765 -1.4373 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.1518 1.7603 2.0894 29 1 2.9972 4.1186 1.6349 30 1 5.3214 4.8636 -0.1903 31 1 5.1236 4.2810 -1.8605 32 1 5.1799 6.0288 -1.5284 33 1 3.3946 5.4855 -3.1144 34 1 1.9423 4.5834 -2.5822 35 1 0.8557 6.5378 -1.8556 36 1 2.0032 7.3685 -2.9577 37 1 3.7406 8.9089 2.3522 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309201103.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:47 Heat of formation + Delta-G solvation = -29.768053 kcal Electronic energy + Delta-G solvation = -18294.427184 eV Core-core repulsion = 15548.778352 eV Total energy + Delta-G solvation = -2745.648832 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.88919 -37.32448 -33.85226 -32.68995 -31.19980 -30.56845 -27.56874 -26.64039 -24.54194 -23.24138 -21.91375 -20.33456 -20.10438 -18.27219 -16.73343 -16.20013 -15.36111 -14.92474 -14.46416 -14.22730 -13.99974 -13.72284 -13.34928 -12.91912 -12.57739 -12.40283 -12.20884 -11.88349 -11.67905 -11.55386 -11.42694 -11.29245 -10.91867 -10.89601 -10.65333 -10.45987 -10.33860 -10.18182 -10.05708 -9.74259 -9.09852 -8.61916 -8.14657 -8.04511 -7.97996 -6.02441 -4.14817 1.38860 1.93822 2.36078 3.21388 3.31183 3.37524 3.40047 4.41624 4.84066 4.96664 5.04501 5.21561 5.27475 5.38145 5.54885 5.57063 5.60643 5.75425 5.80998 5.91391 5.93606 6.10941 6.12140 6.16909 6.21844 6.35432 6.51077 6.58008 6.63898 6.70289 6.78647 6.85756 6.94045 6.99655 7.50264 7.87944 8.21391 8.55148 8.96515 9.55425 11.05181 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024225 B = 0.005635 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.574991 B = 4968.039155 C = 5400.951218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.047 4.047 3 C -0.196 4.196 4 C -0.128 4.128 5 C -0.125 4.125 6 C -0.142 4.142 7 C 0.159 3.841 8 C -0.148 4.148 9 C -0.149 4.149 10 C -0.145 4.145 11 C 0.210 3.790 12 H 0.028 0.972 13 C -0.530 4.530 14 H 0.064 0.936 15 C 0.078 3.922 16 N -0.862 5.862 17 Si 0.891 3.109 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.272 1.272 21 O -0.333 6.333 22 S 0.077 5.923 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.132 0.868 29 H 0.145 0.855 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.159 -14.009 -4.738 14.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 C -0.313 4.313 4 C -0.159 4.159 5 C -0.154 4.154 6 C -0.259 4.259 7 C 0.116 3.884 8 C -0.206 4.206 9 C -0.187 4.187 10 C -0.183 4.183 11 C 0.155 3.845 12 H 0.046 0.954 13 C -0.567 4.567 14 H 0.083 0.917 15 C -0.128 4.128 16 N -0.498 5.498 17 Si 0.719 3.281 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.197 1.197 21 O -0.253 6.253 22 S 0.341 5.659 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.150 0.850 29 H 0.163 0.837 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.123 -14.260 -5.914 15.479 hybrid contribution -0.428 0.915 1.940 2.187 sum -1.551 -13.346 -3.974 14.011 Atomic orbital electron populations 1.21792 0.94696 1.01429 1.02624 1.19998 0.95896 0.90135 1.02563 1.24377 1.10265 1.00609 0.96057 1.20081 1.02711 0.94324 0.98791 1.20114 1.02220 0.96192 0.96863 1.24626 1.06445 0.98490 0.96319 1.20238 0.93034 0.85437 0.89683 1.22164 0.95239 1.01477 1.01703 1.23125 0.99535 0.99266 0.96777 1.23192 1.00361 0.94428 1.00318 1.20696 0.93540 0.83943 0.86321 0.95437 1.20986 1.02608 1.24199 1.08915 0.91745 1.25060 0.94816 0.95779 0.97117 1.70033 1.17146 1.41867 1.20748 0.86620 0.80583 0.80801 0.80134 1.20482 1.21099 1.19726 1.89331 1.87265 1.19386 1.29269 1.83869 1.66482 1.05521 1.10064 0.92488 0.92466 0.92288 0.91291 0.90510 0.85011 0.83705 0.92101 0.93165 0.91788 0.91497 0.91859 0.91643 0.92088 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.89 37.16 0.37 -1.11 16 2 C -0.05 -0.50 6.43 -27.88 -0.18 -0.68 16 3 C -0.20 -2.82 5.76 -36.00 -0.21 -3.03 16 4 C -0.13 -2.02 10.05 -41.21 -0.41 -2.43 16 5 C -0.13 -2.36 9.66 -41.21 -0.40 -2.76 16 6 C -0.14 -2.70 5.27 -36.00 -0.19 -2.89 16 7 C 0.16 3.28 1.11 -91.20 -0.10 3.18 16 8 C -0.15 -2.75 8.60 37.16 0.32 -2.43 16 9 C -0.15 -2.79 6.09 -25.20 -0.15 -2.95 16 10 C -0.15 -3.09 6.55 -24.72 -0.16 -3.25 16 11 C 0.21 5.43 3.11 -26.83 -0.08 5.35 16 12 H 0.03 0.76 8.13 -51.93 -0.42 0.34 16 13 C -0.53 -14.91 8.83 -34.44 -0.30 -15.22 16 14 H 0.06 1.77 7.78 -52.49 -0.41 1.36 16 15 C 0.08 2.21 5.42 -17.82 -0.10 2.12 16 16 N -0.86 -25.42 12.95 55.43 0.72 -24.70 16 17 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 O -0.33 -8.62 9.65 -35.23 -0.34 -8.96 16 22 S 0.08 1.19 21.61 -107.50 -2.32 -1.13 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 29 H 0.15 2.97 7.96 -52.49 -0.42 2.56 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 1.21 8.13 -51.93 -0.42 0.79 16 33 H 0.07 1.12 7.70 -51.92 -0.40 0.72 16 34 H 0.06 1.11 6.38 -51.93 -0.33 0.78 16 35 H 0.06 1.42 8.05 -51.93 -0.42 1.00 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 317.46 15.07 4.78 4.78 Total: -1.00 -30.13 317.46 -9.54 -39.67 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -5.76 Total: 0.04 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: -1.60 Total: -26.10 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.72 Total: -24.70 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.34 Total: -8.96 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 1.19 SS G_CDS: -2.32 Total: -1.13 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.13 -9.54 -39.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309201103.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.905 kcal (2) G-P(sol) polarization free energy of solvation -30.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds