Wall clock time and date at job start Mon Mar 30 2020 06:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46907 * 2 1 4 4 C 1.33390 * 125.20356 * 89.99852 * 3 2 1 5 5 C 1.38428 * 114.92002 * 179.74487 * 4 3 2 6 6 C 1.33391 * 114.92011 * 0.43499 * 5 4 3 7 7 C 1.50697 * 125.20371 * 179.85680 * 6 5 4 8 8 C 1.53008 * 109.99009 * 89.34527 * 7 6 5 9 9 C 1.54097 * 109.88030 * 210.43162 * 7 6 5 10 10 C 1.54811 * 104.18723 * 121.45621 * 9 7 6 11 11 C 1.54994 * 102.09418 * 20.88054 * 10 9 7 12 12 H 1.08998 * 110.75263 * 81.54397 * 11 10 9 13 13 C 1.50701 * 110.61786 * 204.48039 * 11 10 9 14 14 H 1.08002 * 119.99761 * 355.51702 * 13 11 10 15 15 C 1.37871 * 119.99694 * 175.80265 * 13 11 10 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 11 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 11 18 18 H 1.48504 * 109.47209 * 89.99886 * 17 15 13 19 19 H 1.48501 * 109.47358 * 209.99377 * 17 15 13 20 20 H 1.48496 * 109.47341 * 329.99989 * 17 15 13 21 21 O 1.43746 * 109.87786 * 328.26646 * 7 6 5 22 22 S 1.75888 * 109.59503 * 359.58860 * 6 5 4 23 23 H 1.09000 * 109.46895 * 59.99870 * 1 2 3 24 24 H 1.08993 * 109.47405 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47358 * 300.00509 * 1 2 3 26 26 H 1.08992 * 109.46982 * 239.99772 * 2 1 3 27 27 H 1.09003 * 109.46763 * 119.99619 * 2 1 3 28 28 H 1.07994 * 122.53820 * 359.97438 * 4 3 2 29 29 H 1.07995 * 122.54100 * 180.27428 * 5 4 3 30 30 H 1.08994 * 109.47190 * 300.37075 * 8 7 6 31 31 H 1.09000 * 109.46810 * 60.37024 * 8 7 6 32 32 H 1.08995 * 109.46929 * 180.36704 * 8 7 6 33 33 H 1.09009 * 110.48721 * 240.13151 * 9 7 6 34 34 H 1.08998 * 110.49006 * 2.64363 * 9 7 6 35 35 H 1.09001 * 110.90205 * 262.68344 * 10 9 7 36 36 H 1.08998 * 110.90854 * 139.08123 * 10 9 7 37 37 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2886 2.1458 1.0899 5 6 2.7478 3.4281 0.8428 6 6 2.8558 3.7475 -0.4478 7 6 3.3274 5.0773 -0.9772 8 6 4.8474 5.0616 -1.1516 9 6 2.6479 5.3743 -2.3280 10 6 1.9052 6.7122 -2.0930 11 6 2.6600 7.2922 -0.8699 12 1 3.5819 7.7829 -1.1821 13 6 1.7809 8.2519 -0.1101 14 1 0.8006 8.5014 -0.4884 15 6 2.2305 8.8158 1.0650 16 7 3.4242 8.5119 1.5257 17 14 1.1440 10.0113 2.0028 18 1 0.3061 9.2621 2.9733 19 1 1.9946 10.9857 2.7323 20 1 0.2673 10.7366 1.0485 21 8 2.9505 6.1262 -0.0694 22 16 2.3710 2.3765 -1.4373 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.1518 1.7603 2.0894 29 1 2.9972 4.1186 1.6349 30 1 5.3214 4.8636 -0.1903 31 1 5.1236 4.2810 -1.8605 32 1 5.1799 6.0288 -1.5284 33 1 3.3946 5.4855 -3.1144 34 1 1.9423 4.5834 -2.5822 35 1 0.8557 6.5378 -1.8556 36 1 2.0032 7.3685 -2.9577 37 1 3.7406 8.9089 2.3522 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309201103.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:47 Heat of formation + Delta-G solvation = -45.886118 kcal Electronic energy + Delta-G solvation = -18295.126115 eV Core-core repulsion = 15548.778352 eV Total energy + Delta-G solvation = -2746.347764 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.54805 -38.66006 -35.26561 -34.40867 -32.91859 -32.25074 -28.81688 -28.54348 -25.94857 -24.81210 -23.06892 -22.12102 -21.61670 -19.67362 -18.69367 -17.59783 -16.88895 -16.70709 -16.25873 -15.63624 -15.26453 -14.91574 -14.67437 -14.55200 -14.14253 -13.80510 -13.70186 -13.56108 -13.07452 -12.99210 -12.80725 -12.64464 -12.42183 -12.36094 -12.21597 -12.06273 -11.90209 -11.69839 -11.62161 -11.36797 -11.03013 -10.73958 -10.02782 -9.33319 -9.30042 -8.17069 -6.37225 0.09240 0.66220 1.06252 1.38972 1.40674 1.51014 1.86592 2.39215 3.04543 3.55775 3.70252 3.87457 3.97014 4.03318 4.23867 4.34336 4.46031 4.51650 4.55848 4.59367 4.66560 4.76990 4.87666 4.90543 4.97759 5.02246 5.05318 5.09465 5.11927 5.28006 5.35634 5.37562 5.51639 5.53968 5.66190 5.73068 6.14520 6.56198 6.94403 7.37769 8.91061 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.024225 B = 0.005635 C = 0.005183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.574991 B = 4968.039155 C = 5400.951218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 C -0.178 4.178 4 C -0.147 4.147 5 C -0.138 4.138 6 C -0.179 4.179 7 C 0.147 3.853 8 C -0.142 4.142 9 C -0.139 4.139 10 C -0.138 4.138 11 C 0.203 3.797 12 H -0.001 1.001 13 C -0.554 4.554 14 H 0.065 0.935 15 C 0.025 3.975 16 N -0.899 5.899 17 Si 0.960 3.040 18 H -0.278 1.278 19 H -0.279 1.279 20 H -0.260 1.260 21 O -0.369 6.369 22 S 0.121 5.879 23 H 0.048 0.952 24 H 0.082 0.918 25 H 0.049 0.951 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.151 0.849 29 H 0.111 0.889 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.343 -16.137 -5.855 17.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 C -0.295 4.295 4 C -0.177 4.177 5 C -0.168 4.168 6 C -0.296 4.296 7 C 0.104 3.896 8 C -0.200 4.200 9 C -0.176 4.176 10 C -0.176 4.176 11 C 0.147 3.853 12 H 0.017 0.983 13 C -0.591 4.591 14 H 0.083 0.917 15 C -0.177 4.177 16 N -0.536 5.536 17 Si 0.784 3.216 18 H -0.204 1.204 19 H -0.204 1.204 20 H -0.184 1.184 21 O -0.289 6.289 22 S 0.385 5.615 23 H 0.068 0.932 24 H 0.101 0.899 25 H 0.069 0.931 26 H 0.105 0.895 27 H 0.114 0.886 28 H 0.169 0.831 29 H 0.129 0.871 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.310 -16.389 -7.049 17.989 hybrid contribution -0.048 1.463 2.264 2.696 sum -2.358 -14.926 -4.785 15.851 Atomic orbital electron populations 1.21792 0.93900 1.02907 1.01848 1.20202 0.96413 0.87696 1.04400 1.24927 1.07625 1.01922 0.95017 1.20140 1.03856 0.93236 1.00451 1.20109 1.03108 0.97274 0.96318 1.24579 1.08254 0.99360 0.97358 1.20505 0.94157 0.85065 0.89853 1.22106 0.94171 1.01998 1.01698 1.23096 1.00024 0.98122 0.96404 1.23065 0.99505 0.95995 0.98989 1.20562 0.92568 0.84248 0.87920 0.98300 1.21415 1.02920 1.25244 1.09511 0.91691 1.25924 0.96126 0.97584 0.98102 1.70172 1.18974 1.43272 1.21228 0.85546 0.78778 0.78530 0.78708 1.20403 1.20395 1.18415 1.89238 1.87799 1.20559 1.31338 1.83578 1.65431 1.03193 1.09259 0.93235 0.89930 0.93142 0.89547 0.88591 0.83099 0.87075 0.93647 0.89861 0.92820 0.89005 0.90240 0.92387 0.90097 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.89 71.98 0.71 -1.73 16 2 C -0.05 -0.85 6.43 29.85 0.19 -0.66 16 3 C -0.18 -4.65 5.76 24.59 0.14 -4.51 16 4 C -0.15 -4.49 10.05 21.22 0.21 -4.28 16 5 C -0.14 -5.36 9.66 21.22 0.20 -5.15 16 6 C -0.18 -6.78 5.27 24.59 0.13 -6.65 16 7 C 0.15 6.11 1.11 -11.17 -0.01 6.10 16 8 C -0.14 -5.34 8.60 71.98 0.62 -4.73 16 9 C -0.14 -5.03 6.09 31.58 0.19 -4.84 16 10 C -0.14 -5.84 6.55 31.89 0.21 -5.63 16 11 C 0.20 10.85 3.11 30.53 0.09 10.94 16 12 H 0.00 -0.04 8.13 -2.39 -0.02 -0.05 16 13 C -0.55 -32.10 8.83 25.60 0.23 -31.88 16 14 H 0.06 3.63 7.78 -2.91 -0.02 3.61 16 15 C 0.02 1.45 5.42 84.65 0.46 1.91 16 16 N -0.90 -55.19 12.95 21.45 0.28 -54.91 16 17 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 21 O -0.37 -19.97 9.65 -148.98 -1.44 -21.41 16 22 S 0.12 3.46 21.61 -56.49 -1.22 2.24 16 23 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 29 H 0.11 4.95 7.96 -2.91 -0.02 4.92 16 30 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.05 2.08 8.13 -2.39 -0.02 2.06 16 33 H 0.09 2.85 7.70 -2.38 -0.02 2.83 16 34 H 0.08 2.61 6.38 -2.39 -0.02 2.59 16 35 H 0.06 2.51 8.05 -2.39 -0.02 2.49 16 36 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 37 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -67.79 317.46 4.06 -63.73 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 1.03 Total: 14.55 kcal Atomic # 6 Polarization: -54.48 SS G_CDS: 3.38 Total: -51.10 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: 0.28 Total: -54.91 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -1.44 Total: -21.41 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -1.22 Total: 2.24 kcal Total: -67.79 4.06 -63.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309201103.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.847 kcal (2) G-P(sol) polarization free energy of solvation -67.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds