Wall clock time and date at job start Mon Mar 30 2020 06:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47147 * 2 1 4 4 C 1.33382 * 125.20525 * 89.99669 * 3 2 1 5 5 C 1.38419 * 114.92157 * 179.97438 * 4 3 2 6 6 C 1.33381 * 114.92322 * 0.02562 * 5 4 3 7 7 C 1.50703 * 125.20629 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.86540 * 271.00493 * 7 6 5 9 9 C 1.54100 * 109.88106 * 150.00266 * 7 6 5 10 10 C 1.54814 * 104.18516 * 238.54824 * 9 7 6 11 11 C 1.54999 * 102.08894 * 339.11437 * 10 9 7 12 12 H 1.09003 * 110.61621 * 278.36534 * 11 10 9 13 13 C 1.50699 * 110.61286 * 155.52905 * 11 10 9 14 14 H 1.08002 * 120.00511 * 2.18053 * 13 11 10 15 15 C 1.37884 * 119.99783 * 182.17740 * 13 11 10 16 16 N 1.31514 * 119.99573 * 180.27665 * 15 13 11 17 17 Si 1.86800 * 119.99781 * 359.97438 * 15 13 11 18 18 H 1.48501 * 109.46758 * 89.99934 * 17 15 13 19 19 H 1.48499 * 109.47026 * 209.99782 * 17 15 13 20 20 H 1.48496 * 109.47474 * 329.99818 * 17 15 13 21 21 O 1.43883 * 109.94814 * 32.02391 * 7 6 5 22 22 S 1.75883 * 125.19909 * 270.23850 * 3 2 1 23 23 H 1.08999 * 109.47072 * 60.00504 * 1 2 3 24 24 H 1.08999 * 109.47113 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47323 * 300.00279 * 1 2 3 26 26 H 1.08998 * 109.47323 * 239.99721 * 2 1 3 27 27 H 1.09007 * 109.46827 * 119.99740 * 2 1 3 28 28 H 1.08003 * 122.53932 * 359.97438 * 4 3 2 29 29 H 1.08005 * 122.53851 * 180.02562 * 5 4 3 30 30 H 1.09000 * 109.47587 * 298.99328 * 8 7 6 31 31 H 1.09000 * 109.46936 * 58.99560 * 8 7 6 32 32 H 1.09007 * 109.47060 * 178.99122 * 8 7 6 33 33 H 1.08995 * 110.49303 * 119.86597 * 9 7 6 34 34 H 1.09000 * 110.48836 * 357.21942 * 9 7 6 35 35 H 1.09001 * 110.90364 * 220.92076 * 10 9 7 36 36 H 1.08995 * 110.93880 * 97.33240 * 10 9 7 37 37 H 0.97004 * 119.99485 * 179.72881 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2886 2.1458 1.0899 5 6 2.7432 3.4297 0.8427 6 6 2.8555 3.7475 -0.4478 7 6 3.3259 5.0778 -0.9772 8 6 2.1346 6.0247 -1.1362 9 6 4.0255 4.8832 -2.3363 10 6 5.4495 5.4485 -2.1144 11 6 5.2448 6.3707 -0.8854 12 1 4.8395 7.3348 -1.1924 13 6 6.5408 6.5551 -0.1388 14 1 7.4469 6.0985 -0.5087 15 6 6.5696 7.3067 1.0168 16 7 7.7017 7.4721 1.6654 17 14 5.0025 8.0970 1.6563 18 1 4.3158 7.1581 2.5794 19 1 5.3396 9.3476 2.3827 20 1 4.1064 8.4135 0.5153 21 8 4.2895 5.6518 -0.0760 22 16 2.3647 2.3787 -1.4372 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.1518 1.7603 2.0894 29 1 2.9883 4.1217 1.6349 30 1 1.4261 5.6011 -1.8480 31 1 1.6449 6.1576 -0.1715 32 1 2.4842 6.9901 -1.5022 33 1 3.5092 5.4445 -3.1151 34 1 4.0710 3.8251 -2.5939 35 1 5.7796 6.0222 -2.9804 36 1 6.1550 4.6492 -1.8878 37 1 7.7228 8.0042 2.4763 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309201104.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:49 Heat of formation + Delta-G solvation = -26.384205 kcal Electronic energy + Delta-G solvation = -18371.197175 eV Core-core repulsion = 15625.695078 eV Total energy + Delta-G solvation = -2745.502097 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.19142 -37.50057 -33.98834 -32.72064 -31.59785 -30.84215 -27.72878 -27.11323 -24.65985 -23.22711 -22.00929 -20.37450 -20.27662 -18.47820 -16.95743 -16.48879 -15.57501 -15.23956 -14.51159 -14.34180 -14.10938 -13.82140 -13.31135 -13.10692 -12.93884 -12.57757 -12.41681 -12.03045 -11.94062 -11.79977 -11.56979 -11.47998 -11.03773 -10.94633 -10.76609 -10.49155 -10.44872 -10.38715 -9.87153 -9.68315 -9.47235 -8.66114 -8.50948 -8.19929 -8.14177 -6.13244 -4.21798 1.25120 1.80550 2.22554 3.06862 3.39725 3.44450 3.53402 4.46092 4.68462 4.75183 4.95507 5.01595 5.18182 5.21612 5.36051 5.43173 5.45716 5.66861 5.70803 5.72524 5.79291 5.89619 5.91618 6.00364 6.08520 6.15379 6.30319 6.35935 6.39926 6.48041 6.59408 6.66305 6.74130 6.84130 7.13742 7.57707 8.13964 8.41916 8.87844 9.49200 10.97222 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027913 B = 0.005901 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.871285 B = 4743.985895 C = 5036.422304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.049 4.049 3 C -0.192 4.192 4 C -0.130 4.130 5 C -0.123 4.123 6 C -0.150 4.150 7 C 0.163 3.837 8 C -0.154 4.154 9 C -0.149 4.149 10 C -0.133 4.133 11 C 0.168 3.832 12 H 0.033 0.967 13 C -0.514 4.514 14 H 0.081 0.919 15 C 0.084 3.916 16 N -0.891 5.891 17 Si 0.898 3.102 18 H -0.274 1.274 19 H -0.298 1.298 20 H -0.266 1.266 21 O -0.362 6.362 22 S 0.086 5.914 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.134 0.866 29 H 0.143 0.857 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.268 -10.972 -5.614 18.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 C -0.309 4.309 4 C -0.160 4.160 5 C -0.152 4.152 6 C -0.267 4.267 7 C 0.121 3.879 8 C -0.212 4.212 9 C -0.187 4.187 10 C -0.170 4.170 11 C 0.113 3.887 12 H 0.050 0.950 13 C -0.551 4.551 14 H 0.099 0.901 15 C -0.121 4.121 16 N -0.528 5.528 17 Si 0.727 3.273 18 H -0.199 1.199 19 H -0.225 1.225 20 H -0.190 1.190 21 O -0.283 6.283 22 S 0.350 5.650 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.151 0.849 29 H 0.160 0.840 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.282 -11.180 -6.790 19.367 hybrid contribution -0.557 0.686 1.849 2.050 sum -14.839 -10.494 -4.941 18.834 Atomic orbital electron populations 1.21786 0.94690 1.01555 1.02421 1.20025 0.95840 0.90071 1.02857 1.24414 1.09927 1.00533 0.96022 1.20067 1.02758 0.94256 0.98933 1.20083 1.01671 0.96812 0.96680 1.24543 1.07043 0.98600 0.96490 1.20248 0.90655 0.87264 0.89764 1.22238 0.97427 0.99538 1.02006 1.23125 0.97993 1.01310 0.96253 1.22998 0.94579 1.00008 0.99463 1.21294 0.88570 0.90345 0.88468 0.94963 1.20935 0.92005 1.32242 1.09940 0.90102 1.25059 0.96269 0.94981 0.95786 1.69923 1.25999 1.39311 1.17572 0.86455 0.83486 0.77868 0.79501 1.19929 1.22497 1.19050 1.89172 1.38881 1.68947 1.31289 1.83889 1.65815 1.05487 1.09808 0.92548 0.92364 0.92380 0.91119 0.90320 0.84855 0.83973 0.92355 0.92146 0.91718 0.91120 0.91376 0.91525 0.90999 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.89 37.16 0.37 -0.92 16 2 C -0.05 -0.49 6.43 -27.88 -0.18 -0.67 16 3 C -0.19 -2.60 5.76 -36.00 -0.21 -2.81 16 4 C -0.13 -1.92 10.05 -41.21 -0.41 -2.34 16 5 C -0.12 -2.19 9.66 -41.21 -0.40 -2.59 16 6 C -0.15 -2.67 5.27 -36.00 -0.19 -2.86 16 7 C 0.16 3.11 1.11 -91.19 -0.10 3.01 16 8 C -0.15 -2.59 8.59 37.16 0.32 -2.27 16 9 C -0.15 -2.58 6.09 -25.20 -0.15 -2.74 16 10 C -0.13 -2.68 6.55 -24.72 -0.16 -2.84 16 11 C 0.17 4.08 2.47 -26.83 -0.07 4.01 16 12 H 0.03 0.79 7.19 -51.93 -0.37 0.42 16 13 C -0.51 -14.75 9.40 -34.44 -0.32 -15.08 16 14 H 0.08 2.47 8.02 -52.49 -0.42 2.05 16 15 C 0.08 2.46 5.47 -17.82 -0.10 2.36 16 16 N -0.89 -27.41 13.96 55.43 0.77 -26.64 16 17 Si 0.90 23.03 26.44 -169.99 -4.50 18.53 16 18 H -0.27 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 20 H -0.27 -6.53 6.53 56.52 0.37 -6.16 16 21 O -0.36 -8.65 8.23 -35.23 -0.29 -8.94 16 22 S 0.09 1.24 21.59 -107.50 -2.32 -1.08 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 29 H 0.14 2.71 7.97 -52.48 -0.42 2.29 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.09 8.14 -51.92 -0.42 0.66 16 33 H 0.07 1.07 7.70 -51.93 -0.40 0.67 16 34 H 0.07 1.11 6.36 -51.93 -0.33 0.78 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.52 8.05 -51.93 -0.42 1.10 16 37 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 312.64 15.07 4.71 4.71 Total: -1.00 -31.00 312.64 -8.98 -39.98 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -5.76 Total: -0.85 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: -1.61 Total: -25.72 kcal Atomic # 7 Polarization: -27.41 SS G_CDS: 0.77 Total: -26.64 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -0.29 Total: -8.94 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.50 Total: 18.53 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.32 Total: -1.08 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.00 -8.98 -39.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309201104.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.595 kcal (2) G-P(sol) polarization free energy of solvation -30.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds