Wall clock time and date at job start Mon Mar 30 2020 06:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47147 * 2 1 4 4 C 1.33382 * 125.20525 * 89.99669 * 3 2 1 5 5 C 1.38419 * 114.92157 * 179.97438 * 4 3 2 6 6 C 1.33381 * 114.92322 * 0.02562 * 5 4 3 7 7 C 1.50703 * 125.20629 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.86540 * 271.00493 * 7 6 5 9 9 C 1.54100 * 109.88106 * 150.00266 * 7 6 5 10 10 C 1.54814 * 104.18516 * 238.54824 * 9 7 6 11 11 C 1.54999 * 102.08894 * 339.11437 * 10 9 7 12 12 H 1.09003 * 110.61621 * 278.36534 * 11 10 9 13 13 C 1.50699 * 110.61286 * 155.52905 * 11 10 9 14 14 H 1.08002 * 120.00511 * 2.18053 * 13 11 10 15 15 C 1.37884 * 119.99783 * 182.17740 * 13 11 10 16 16 N 1.31514 * 119.99573 * 180.27665 * 15 13 11 17 17 Si 1.86800 * 119.99781 * 359.97438 * 15 13 11 18 18 H 1.48501 * 109.46758 * 89.99934 * 17 15 13 19 19 H 1.48499 * 109.47026 * 209.99782 * 17 15 13 20 20 H 1.48496 * 109.47474 * 329.99818 * 17 15 13 21 21 O 1.43883 * 109.94814 * 32.02391 * 7 6 5 22 22 S 1.75883 * 125.19909 * 270.23850 * 3 2 1 23 23 H 1.08999 * 109.47072 * 60.00504 * 1 2 3 24 24 H 1.08999 * 109.47113 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47323 * 300.00279 * 1 2 3 26 26 H 1.08998 * 109.47323 * 239.99721 * 2 1 3 27 27 H 1.09007 * 109.46827 * 119.99740 * 2 1 3 28 28 H 1.08003 * 122.53932 * 359.97438 * 4 3 2 29 29 H 1.08005 * 122.53851 * 180.02562 * 5 4 3 30 30 H 1.09000 * 109.47587 * 298.99328 * 8 7 6 31 31 H 1.09000 * 109.46936 * 58.99560 * 8 7 6 32 32 H 1.09007 * 109.47060 * 178.99122 * 8 7 6 33 33 H 1.08995 * 110.49303 * 119.86597 * 9 7 6 34 34 H 1.09000 * 110.48836 * 357.21942 * 9 7 6 35 35 H 1.09001 * 110.90364 * 220.92076 * 10 9 7 36 36 H 1.08995 * 110.93880 * 97.33240 * 10 9 7 37 37 H 0.97004 * 119.99485 * 179.72881 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2886 2.1458 1.0899 5 6 2.7432 3.4297 0.8427 6 6 2.8555 3.7475 -0.4478 7 6 3.3259 5.0778 -0.9772 8 6 2.1346 6.0247 -1.1362 9 6 4.0255 4.8832 -2.3363 10 6 5.4495 5.4485 -2.1144 11 6 5.2448 6.3707 -0.8854 12 1 4.8395 7.3348 -1.1924 13 6 6.5408 6.5551 -0.1388 14 1 7.4469 6.0985 -0.5087 15 6 6.5696 7.3067 1.0168 16 7 7.7017 7.4721 1.6654 17 14 5.0025 8.0970 1.6563 18 1 4.3158 7.1581 2.5794 19 1 5.3396 9.3476 2.3827 20 1 4.1064 8.4135 0.5153 21 8 4.2895 5.6518 -0.0760 22 16 2.3647 2.3787 -1.4372 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.1518 1.7603 2.0894 29 1 2.9883 4.1217 1.6349 30 1 1.4261 5.6011 -1.8480 31 1 1.6449 6.1576 -0.1715 32 1 2.4842 6.9901 -1.5022 33 1 3.5092 5.4445 -3.1151 34 1 4.0710 3.8251 -2.5939 35 1 5.7796 6.0222 -2.9804 36 1 6.1550 4.6492 -1.8878 37 1 7.7228 8.0042 2.4763 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309201104.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:49 Heat of formation + Delta-G solvation = -43.937273 kcal Electronic energy + Delta-G solvation = -18371.958333 eV Core-core repulsion = 15625.695078 eV Total energy + Delta-G solvation = -2746.263255 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.75349 -38.73069 -35.32019 -34.51192 -33.17080 -32.46183 -28.98176 -28.80833 -25.92888 -24.72956 -23.07238 -22.05354 -21.76462 -19.77955 -19.04954 -17.76220 -17.02288 -16.86290 -16.22247 -15.72234 -15.23021 -14.89357 -14.84304 -14.61161 -14.42804 -14.19556 -13.75439 -13.57432 -13.15023 -13.04959 -12.83612 -12.71708 -12.46611 -12.40123 -12.21240 -11.96265 -11.85972 -11.72474 -11.67187 -11.39107 -11.33628 -10.89038 -10.32535 -9.37337 -9.32656 -8.39739 -6.52161 0.05101 0.62597 1.02903 1.31268 1.38500 1.47588 1.82814 2.32615 2.82871 3.42459 3.61824 3.84584 3.86310 3.95462 4.21923 4.25597 4.37207 4.44818 4.50988 4.53528 4.62960 4.69452 4.84931 4.86863 4.88891 4.96530 5.01086 5.06963 5.09416 5.22837 5.30555 5.36201 5.39073 5.46254 5.49592 5.61863 6.16838 6.37295 6.64211 7.22914 8.74779 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027913 B = 0.005901 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.871285 B = 4743.985895 C = 5036.422304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.051 4.051 3 C -0.178 4.178 4 C -0.149 4.149 5 C -0.139 4.139 6 C -0.184 4.184 7 C 0.151 3.849 8 C -0.151 4.151 9 C -0.138 4.138 10 C -0.130 4.130 11 C 0.167 3.833 12 H 0.036 0.964 13 C -0.526 4.526 14 H 0.044 0.956 15 C 0.031 3.969 16 N -0.937 5.937 17 Si 0.958 3.042 18 H -0.281 1.281 19 H -0.289 1.289 20 H -0.248 1.248 21 O -0.391 6.391 22 S 0.127 5.873 23 H 0.052 0.948 24 H 0.079 0.921 25 H 0.053 0.947 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.151 0.849 29 H 0.115 0.885 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.098 -12.445 -7.128 22.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.090 4.090 3 C -0.295 4.295 4 C -0.178 4.178 5 C -0.169 4.169 6 C -0.301 4.301 7 C 0.109 3.891 8 C -0.209 4.209 9 C -0.175 4.175 10 C -0.168 4.168 11 C 0.112 3.888 12 H 0.054 0.946 13 C -0.563 4.563 14 H 0.062 0.938 15 C -0.169 4.169 16 N -0.576 5.576 17 Si 0.784 3.216 18 H -0.207 1.207 19 H -0.216 1.216 20 H -0.171 1.171 21 O -0.312 6.312 22 S 0.391 5.609 23 H 0.072 0.928 24 H 0.098 0.902 25 H 0.072 0.928 26 H 0.101 0.899 27 H 0.110 0.890 28 H 0.168 0.832 29 H 0.133 0.867 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.071 0.929 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.119 -12.655 -8.326 22.859 hybrid contribution 0.333 0.994 2.287 2.516 sum -16.786 -11.661 -6.038 21.312 Atomic orbital electron populations 1.21771 0.93394 1.02925 1.02081 1.20214 0.96837 0.87791 1.04174 1.24931 1.07620 1.01748 0.95185 1.20147 1.03862 0.93391 1.00433 1.20125 1.02535 0.97853 0.96344 1.24565 1.08565 0.99556 0.97389 1.20576 0.90501 0.88354 0.89667 1.22223 0.97015 0.99149 1.02498 1.23116 0.95743 1.02452 0.96231 1.22918 0.96381 0.99037 0.98482 1.21105 0.86849 0.91617 0.89260 0.94621 1.21231 0.93280 1.31570 1.10197 0.93751 1.25867 0.99142 0.95742 0.96141 1.70040 1.28133 1.40937 1.18517 0.85520 0.79921 0.76936 0.79263 1.20672 1.21588 1.17137 1.89058 1.39973 1.69379 1.32806 1.83631 1.64824 1.03400 1.09010 0.92850 0.90201 0.92793 0.89860 0.88966 0.83169 0.86667 0.89268 0.92957 0.91798 0.87956 0.90147 0.89404 0.92888 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.89 71.98 0.71 -1.31 16 2 C -0.05 -0.85 6.43 29.85 0.19 -0.66 16 3 C -0.18 -4.34 5.76 24.59 0.14 -4.20 16 4 C -0.15 -4.22 10.05 21.21 0.21 -4.00 16 5 C -0.14 -4.91 9.66 21.21 0.20 -4.70 16 6 C -0.18 -6.31 5.27 24.59 0.13 -6.18 16 7 C 0.15 5.53 1.11 -11.17 -0.01 5.51 16 8 C -0.15 -4.71 8.59 71.98 0.62 -4.09 16 9 C -0.14 -4.43 6.09 31.59 0.19 -4.24 16 10 C -0.13 -5.16 6.55 31.90 0.21 -4.95 16 11 C 0.17 8.12 2.47 30.53 0.08 8.20 16 12 H 0.04 1.71 7.19 -2.39 -0.02 1.70 16 13 C -0.53 -31.22 9.40 25.60 0.24 -30.98 16 14 H 0.04 2.86 8.02 -2.91 -0.02 2.84 16 15 C 0.03 1.88 5.47 84.66 0.46 2.35 16 16 N -0.94 -59.80 13.96 21.45 0.30 -59.50 16 17 Si 0.96 48.42 26.44 68.60 1.81 50.23 16 18 H -0.28 -14.39 7.11 99.48 0.71 -13.68 16 19 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 20 H -0.25 -11.64 6.53 99.48 0.65 -10.99 16 21 O -0.39 -18.69 8.23 -148.98 -1.23 -19.92 16 22 S 0.13 3.31 21.59 -56.49 -1.22 2.09 16 23 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 28 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 29 H 0.12 4.59 7.97 -2.91 -0.02 4.57 16 30 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.10 2.66 7.70 -2.39 -0.02 2.64 16 34 H 0.08 2.38 6.36 -2.39 -0.02 2.37 16 35 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 36 H 0.05 2.26 8.05 -2.39 -0.02 2.24 16 37 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -69.47 312.64 4.03 -65.44 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.98 Total: 10.91 kcal Atomic # 6 Polarization: -52.64 SS G_CDS: 3.38 Total: -49.26 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: 0.30 Total: -59.50 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -1.23 Total: -19.92 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 1.81 Total: 50.23 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -1.22 Total: 2.09 kcal Total: -69.47 4.03 -65.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309201104.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.504 kcal (2) G-P(sol) polarization free energy of solvation -69.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds