Wall clock time and date at job start Mon Mar 30 2020 06:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47278 * 2 1 4 4 C 1.33388 * 125.20118 * 89.99746 * 3 2 1 5 5 C 1.38427 * 114.91757 * 179.74796 * 4 3 2 6 6 C 1.33385 * 114.92052 * 0.43936 * 5 4 3 7 7 C 1.50706 * 125.19948 * 179.85909 * 6 5 4 8 8 C 1.52999 * 109.82466 * 88.82899 * 7 6 5 9 9 C 1.54384 * 109.82643 * 209.71548 * 7 6 5 10 10 C 1.55303 * 102.25228 * 140.87208 * 9 7 6 11 11 C 1.54951 * 100.94085 * 325.86133 * 10 9 7 12 12 H 1.08999 * 110.31186 * 277.53304 * 11 10 9 13 13 C 1.50698 * 110.30724 * 155.35794 * 11 10 9 14 14 H 1.08004 * 120.00239 * 0.02562 * 13 11 10 15 15 C 1.37884 * 119.99828 * 180.02562 * 13 11 10 16 16 N 1.31508 * 120.00157 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99739 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47025 * 60.00276 * 17 15 13 19 19 H 1.48503 * 109.46663 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47013 * 299.99875 * 17 15 13 21 21 O 1.43240 * 109.83105 * 327.84664 * 7 6 5 22 22 S 1.75876 * 109.59502 * 359.58848 * 6 5 4 23 23 H 1.09001 * 109.47278 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46853 * 300.00129 * 1 2 3 25 25 H 1.08996 * 109.46927 * 59.99697 * 1 2 3 26 26 H 1.09002 * 109.46853 * 239.99871 * 2 1 3 27 27 H 1.08996 * 109.46927 * 120.00303 * 2 1 3 28 28 H 1.07997 * 122.54126 * 359.97438 * 4 3 2 29 29 H 1.08004 * 122.53857 * 180.27325 * 5 4 3 30 30 H 1.09004 * 109.47106 * 60.69981 * 8 7 6 31 31 H 1.08994 * 109.47010 * 180.69577 * 8 7 6 32 32 H 1.08999 * 109.46948 * 300.70141 * 8 7 6 33 33 H 1.09004 * 110.84603 * 259.06045 * 9 7 6 34 34 H 1.08993 * 110.85045 * 22.47544 * 9 7 6 35 35 H 1.09001 * 111.12786 * 83.78273 * 10 9 7 36 36 H 1.09001 * 111.12702 * 207.90492 * 10 9 7 37 37 H 0.96993 * 120.00357 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2887 2.1457 1.0900 5 6 2.7479 3.4280 0.8428 6 6 2.8559 3.7474 -0.4477 7 6 3.3275 5.0773 -0.9770 8 6 4.8489 5.0616 -1.1379 9 6 2.6597 5.3655 -2.3387 10 6 2.3667 6.8879 -2.2465 11 6 2.0520 7.0358 -0.7365 12 1 1.0155 6.7633 -0.5376 13 6 2.3193 8.4477 -0.2824 14 1 2.6787 9.1828 -0.9873 15 6 2.1050 8.8009 1.0331 16 7 1.6679 7.9057 1.8915 17 14 2.4357 10.5512 1.5958 18 1 1.5770 11.4886 0.8282 19 1 2.1296 10.6717 3.0439 20 1 3.8639 10.8846 1.3628 21 8 2.9431 6.1227 -0.0764 22 16 2.3709 2.3766 -1.4371 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.1519 1.7602 2.0895 29 1 2.9973 4.1185 1.6350 30 1 5.1314 4.2829 -1.8465 31 1 5.1850 6.0298 -1.5091 32 1 5.3143 4.8609 -0.1729 33 1 3.3442 5.1513 -3.1596 34 1 1.7370 4.7956 -2.4467 35 1 3.2426 7.4741 -2.5245 36 1 1.5053 7.1599 -2.8564 37 1 1.5168 8.1543 2.8168 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309201105.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:52 Heat of formation + Delta-G solvation = -30.260482 kcal Electronic energy + Delta-G solvation = -18303.037564 eV Core-core repulsion = 15557.367379 eV Total energy + Delta-G solvation = -2745.670185 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.88338 -37.27475 -33.82604 -32.69954 -31.28435 -30.56975 -27.54130 -26.54702 -24.51159 -23.21342 -21.88414 -20.50507 -20.06801 -18.06649 -16.56917 -16.48545 -15.33907 -14.99221 -14.62871 -14.23598 -13.97913 -13.47155 -13.25056 -12.79803 -12.55979 -12.37320 -12.06744 -11.81792 -11.76388 -11.68763 -11.41037 -11.27057 -10.94725 -10.87447 -10.67552 -10.47239 -10.35030 -10.16269 -10.09249 -9.79542 -9.11005 -8.58645 -8.05973 -7.98802 -7.95963 -6.00844 -4.14292 1.43232 1.99506 2.41295 3.26600 3.32361 3.37009 3.39159 4.42088 4.87374 4.93216 5.07131 5.22209 5.30462 5.39027 5.49577 5.57181 5.59528 5.78073 5.84329 5.92465 5.96400 6.10012 6.15298 6.16896 6.26143 6.34372 6.52535 6.56210 6.60366 6.69690 6.75518 6.86239 6.98160 7.04191 7.58205 7.88692 8.25461 8.61892 9.01308 9.56543 11.06319 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027476 B = 0.005498 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.812771 B = 5091.611915 C = 5556.356429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C -0.196 4.196 4 C -0.128 4.128 5 C -0.122 4.122 6 C -0.155 4.155 7 C 0.164 3.836 8 C -0.138 4.138 9 C -0.150 4.150 10 C -0.144 4.144 11 C 0.211 3.789 12 H 0.029 0.971 13 C -0.533 4.533 14 H 0.062 0.938 15 C 0.079 3.921 16 N -0.862 5.862 17 Si 0.891 3.109 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.275 1.275 21 O -0.338 6.338 22 S 0.069 5.931 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.132 0.868 29 H 0.146 0.854 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.065 -13.208 -5.210 14.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 C -0.312 4.312 4 C -0.159 4.159 5 C -0.151 4.151 6 C -0.272 4.272 7 C 0.121 3.879 8 C -0.196 4.196 9 C -0.188 4.188 10 C -0.182 4.182 11 C 0.156 3.844 12 H 0.046 0.954 13 C -0.571 4.571 14 H 0.081 0.919 15 C -0.127 4.127 16 N -0.498 5.498 17 Si 0.718 3.282 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 O -0.258 6.258 22 S 0.333 5.667 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.150 0.850 29 H 0.164 0.836 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.976 -13.494 -6.349 14.945 hybrid contribution 0.148 1.159 1.775 2.125 sum 1.124 -12.336 -4.574 13.204 Atomic orbital electron populations 1.21793 0.94706 1.01397 1.02651 1.19995 0.95898 0.90175 1.02504 1.24340 1.10351 1.00570 0.95969 1.20092 1.02646 0.94373 0.98755 1.20119 1.01996 0.96081 0.96899 1.25100 1.06641 0.98986 0.96444 1.20229 0.93496 0.84653 0.89515 1.21987 0.94512 1.01528 1.01576 1.23247 1.00316 0.98721 0.96538 1.23308 1.01079 0.93024 1.00808 1.20552 0.90081 0.88901 0.84868 0.95355 1.21060 1.47299 0.93353 0.95358 0.91946 1.25072 0.93763 0.97068 0.96808 1.70022 1.42658 1.33434 1.03658 0.86694 0.78941 0.84901 0.77629 1.20104 1.21186 1.20068 1.88886 1.66133 1.34876 1.35867 1.83865 1.66650 1.05910 1.10313 0.92492 0.92268 0.92490 0.91339 0.90543 0.85047 0.83639 0.92975 0.91677 0.92278 0.91423 0.91416 0.91432 0.91828 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.90 37.16 0.37 -1.17 16 2 C -0.05 -0.52 6.43 -27.88 -0.18 -0.70 16 3 C -0.20 -2.88 5.76 -36.00 -0.21 -3.08 16 4 C -0.13 -2.07 10.05 -41.21 -0.41 -2.48 16 5 C -0.12 -2.35 9.66 -41.21 -0.40 -2.75 16 6 C -0.15 -2.96 5.22 -36.00 -0.19 -3.15 16 7 C 0.16 3.35 1.19 -91.04 -0.11 3.25 16 8 C -0.14 -2.48 8.71 37.16 0.32 -2.16 16 9 C -0.15 -2.79 5.64 -24.79 -0.14 -2.93 16 10 C -0.14 -3.01 6.53 -24.48 -0.16 -3.17 16 11 C 0.21 5.48 3.22 -26.85 -0.09 5.40 16 12 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 13 C -0.53 -14.94 8.79 -34.44 -0.30 -15.24 16 14 H 0.06 1.69 7.76 -52.48 -0.41 1.28 16 15 C 0.08 2.24 5.43 -17.82 -0.10 2.14 16 16 N -0.86 -25.58 13.05 55.43 0.72 -24.85 16 17 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 O -0.34 -8.70 9.59 -35.23 -0.34 -9.04 16 22 S 0.07 1.08 21.97 -107.50 -2.36 -1.28 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 29 H 0.15 3.07 7.96 -52.48 -0.42 2.65 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.08 7.82 -51.93 -0.41 0.68 16 34 H 0.07 1.23 7.12 -51.93 -0.37 0.86 16 35 H 0.07 1.38 8.04 -51.93 -0.42 0.97 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 318.48 15.07 4.80 4.80 Total: -1.00 -30.15 318.48 -9.59 -39.74 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.80 Total: 0.35 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -1.59 Total: -26.05 kcal Atomic # 7 Polarization: -25.58 SS G_CDS: 0.72 Total: -24.85 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.34 Total: -9.04 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.36 Total: -1.28 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.15 -9.59 -39.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309201105.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.479 kcal (2) G-P(sol) polarization free energy of solvation -30.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds