Wall clock time and date at job start Mon Mar 30 2020 06:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47278 * 2 1 4 4 C 1.33388 * 125.20118 * 89.99746 * 3 2 1 5 5 C 1.38427 * 114.91757 * 179.74796 * 4 3 2 6 6 C 1.33385 * 114.92052 * 0.43936 * 5 4 3 7 7 C 1.50706 * 125.19948 * 179.85909 * 6 5 4 8 8 C 1.52999 * 109.82466 * 88.82899 * 7 6 5 9 9 C 1.54384 * 109.82643 * 209.71548 * 7 6 5 10 10 C 1.55303 * 102.25228 * 140.87208 * 9 7 6 11 11 C 1.54951 * 100.94085 * 325.86133 * 10 9 7 12 12 H 1.08999 * 110.31186 * 277.53304 * 11 10 9 13 13 C 1.50698 * 110.30724 * 155.35794 * 11 10 9 14 14 H 1.08004 * 120.00239 * 0.02562 * 13 11 10 15 15 C 1.37884 * 119.99828 * 180.02562 * 13 11 10 16 16 N 1.31508 * 120.00157 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99739 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47025 * 60.00276 * 17 15 13 19 19 H 1.48503 * 109.46663 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47013 * 299.99875 * 17 15 13 21 21 O 1.43240 * 109.83105 * 327.84664 * 7 6 5 22 22 S 1.75876 * 109.59502 * 359.58848 * 6 5 4 23 23 H 1.09001 * 109.47278 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46853 * 300.00129 * 1 2 3 25 25 H 1.08996 * 109.46927 * 59.99697 * 1 2 3 26 26 H 1.09002 * 109.46853 * 239.99871 * 2 1 3 27 27 H 1.08996 * 109.46927 * 120.00303 * 2 1 3 28 28 H 1.07997 * 122.54126 * 359.97438 * 4 3 2 29 29 H 1.08004 * 122.53857 * 180.27325 * 5 4 3 30 30 H 1.09004 * 109.47106 * 60.69981 * 8 7 6 31 31 H 1.08994 * 109.47010 * 180.69577 * 8 7 6 32 32 H 1.08999 * 109.46948 * 300.70141 * 8 7 6 33 33 H 1.09004 * 110.84603 * 259.06045 * 9 7 6 34 34 H 1.08993 * 110.85045 * 22.47544 * 9 7 6 35 35 H 1.09001 * 111.12786 * 83.78273 * 10 9 7 36 36 H 1.09001 * 111.12702 * 207.90492 * 10 9 7 37 37 H 0.96993 * 120.00357 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2887 2.1457 1.0900 5 6 2.7479 3.4280 0.8428 6 6 2.8559 3.7474 -0.4477 7 6 3.3275 5.0773 -0.9770 8 6 4.8489 5.0616 -1.1379 9 6 2.6597 5.3655 -2.3387 10 6 2.3667 6.8879 -2.2465 11 6 2.0520 7.0358 -0.7365 12 1 1.0155 6.7633 -0.5376 13 6 2.3193 8.4477 -0.2824 14 1 2.6787 9.1828 -0.9873 15 6 2.1050 8.8009 1.0331 16 7 1.6679 7.9057 1.8915 17 14 2.4357 10.5512 1.5958 18 1 1.5770 11.4886 0.8282 19 1 2.1296 10.6717 3.0439 20 1 3.8639 10.8846 1.3628 21 8 2.9431 6.1227 -0.0764 22 16 2.3709 2.3766 -1.4371 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.1519 1.7602 2.0895 29 1 2.9973 4.1185 1.6350 30 1 5.1314 4.2829 -1.8465 31 1 5.1850 6.0298 -1.5091 32 1 5.3143 4.8609 -0.1729 33 1 3.3442 5.1513 -3.1596 34 1 1.7370 4.7956 -2.4467 35 1 3.2426 7.4741 -2.5245 36 1 1.5053 7.1599 -2.8564 37 1 1.5168 8.1543 2.8168 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309201105.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:51 Heat of formation + Delta-G solvation = -46.509074 kcal Electronic energy + Delta-G solvation = -18303.742156 eV Core-core repulsion = 15557.367379 eV Total energy + Delta-G solvation = -2746.374777 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.53992 -38.63741 -35.27555 -34.40450 -33.00003 -32.24981 -28.82022 -28.41789 -25.89954 -24.80426 -23.09832 -22.25549 -21.58975 -19.47387 -18.64150 -17.89736 -16.78583 -16.68686 -16.48566 -15.61920 -15.17679 -14.88598 -14.56060 -14.29971 -14.22312 -13.73556 -13.71638 -13.47269 -13.16872 -13.03797 -12.78492 -12.59724 -12.44072 -12.37821 -12.23858 -12.13598 -11.93477 -11.66660 -11.60604 -11.41240 -11.00651 -10.71648 -9.95196 -9.32829 -9.28988 -8.15310 -6.36829 0.10613 0.69682 1.07810 1.39798 1.43069 1.50448 1.87887 2.40103 3.03402 3.54142 3.69856 3.87419 3.92197 4.04965 4.22878 4.38119 4.44988 4.56204 4.57050 4.61314 4.67853 4.79021 4.86458 4.90113 5.00134 5.00945 5.06551 5.09219 5.12619 5.29599 5.35939 5.36674 5.54581 5.56965 5.67797 5.73787 6.16666 6.60614 7.03504 7.39559 8.92376 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027476 B = 0.005498 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.812771 B = 5091.611915 C = 5556.356429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C -0.179 4.179 4 C -0.148 4.148 5 C -0.139 4.139 6 C -0.189 4.189 7 C 0.149 3.851 8 C -0.132 4.132 9 C -0.138 4.138 10 C -0.135 4.135 11 C 0.204 3.796 12 H -0.015 1.015 13 C -0.554 4.554 14 H 0.068 0.932 15 C 0.023 3.977 16 N -0.903 5.903 17 Si 0.962 3.038 18 H -0.263 1.263 19 H -0.284 1.284 20 H -0.269 1.269 21 O -0.373 6.373 22 S 0.115 5.885 23 H 0.083 0.917 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.149 0.851 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.406 -14.705 -6.897 16.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.087 4.087 3 C -0.296 4.296 4 C -0.178 4.178 5 C -0.168 4.168 6 C -0.306 4.306 7 C 0.107 3.893 8 C -0.190 4.190 9 C -0.176 4.176 10 C -0.173 4.173 11 C 0.149 3.851 12 H 0.003 0.997 13 C -0.591 4.591 14 H 0.086 0.914 15 C -0.179 4.179 16 N -0.540 5.540 17 Si 0.786 3.214 18 H -0.187 1.187 19 H -0.210 1.210 20 H -0.194 1.194 21 O -0.293 6.293 22 S 0.380 5.620 23 H 0.102 0.898 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.105 0.895 27 H 0.114 0.886 28 H 0.167 0.833 29 H 0.128 0.872 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.323 -14.990 -8.058 17.070 hybrid contribution 0.014 1.498 2.278 2.726 sum 1.337 -13.492 -5.780 14.739 Atomic orbital electron populations 1.21794 0.94005 1.02913 1.01756 1.20196 0.96332 0.87728 1.04403 1.24894 1.07754 1.01934 0.94990 1.20144 1.03924 0.93383 1.00375 1.20091 1.03206 0.97118 0.96429 1.25061 1.08094 1.00086 0.97337 1.20566 0.95061 0.84041 0.89637 1.21947 0.92772 1.02480 1.01808 1.23215 1.01093 0.96736 0.96547 1.23180 1.01858 0.95068 0.97210 1.20381 0.88127 0.88344 0.88275 0.99735 1.21504 1.46972 0.94822 0.95817 0.91410 1.25979 0.93474 1.01481 0.96967 1.70185 1.44240 1.35743 1.03857 0.85579 0.79080 0.79617 0.77133 1.18743 1.20982 1.19389 1.88788 1.65895 1.36590 1.38072 1.83556 1.65573 1.03542 1.09379 0.89825 0.93318 0.93287 0.89466 0.88614 0.83345 0.87249 0.89716 0.91964 0.93515 0.87886 0.91179 0.90873 0.90339 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.90 71.98 0.71 -1.92 16 2 C -0.05 -0.89 6.43 29.85 0.19 -0.70 16 3 C -0.18 -4.90 5.76 24.59 0.14 -4.76 16 4 C -0.15 -4.77 10.05 21.22 0.21 -4.55 16 5 C -0.14 -5.57 9.66 21.22 0.20 -5.37 16 6 C -0.19 -7.28 5.22 24.59 0.13 -7.15 16 7 C 0.15 6.14 1.19 -11.07 -0.01 6.13 16 8 C -0.13 -4.68 8.71 71.98 0.63 -4.05 16 9 C -0.14 -4.93 5.64 31.85 0.18 -4.75 16 10 C -0.14 -5.61 6.53 32.05 0.21 -5.40 16 11 C 0.20 11.03 3.22 30.51 0.10 11.13 16 12 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 13 C -0.55 -31.90 8.79 25.60 0.23 -31.68 16 14 H 0.07 3.71 7.76 -2.91 -0.02 3.68 16 15 C 0.02 1.34 5.43 84.66 0.46 1.80 16 16 N -0.90 -56.11 13.05 21.45 0.28 -55.83 16 17 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 18 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 O -0.37 -20.12 9.59 -148.98 -1.43 -21.55 16 22 S 0.12 3.39 21.97 -56.49 -1.24 2.15 16 23 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.15 4.11 8.06 -2.91 -0.02 4.08 16 29 H 0.11 5.07 7.96 -2.91 -0.02 5.05 16 30 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.10 2.95 7.82 -2.38 -0.02 2.93 16 34 H 0.07 2.45 7.12 -2.39 -0.02 2.43 16 35 H 0.07 2.92 8.04 -2.39 -0.02 2.90 16 36 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 37 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -68.66 318.48 4.05 -64.61 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 1.03 Total: 15.14 kcal Atomic # 6 Polarization: -54.66 SS G_CDS: 3.38 Total: -51.28 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.28 Total: -55.83 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -1.43 Total: -21.55 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -1.24 Total: 2.15 kcal Total: -68.66 4.05 -64.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309201105.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.100 kcal (2) G-P(sol) polarization free energy of solvation -68.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds