Wall clock time and date at job start Mon Mar 30 2020 06:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46765 * 2 1 4 4 C 1.50696 * 109.49556 * 307.61883 * 3 2 1 5 5 C 1.33383 * 125.20480 * 269.97528 * 4 3 2 6 6 C 1.38427 * 114.92294 * 179.97438 * 5 4 3 7 7 C 1.33388 * 114.91956 * 0.02562 * 6 5 4 8 8 S 1.75885 * 109.59335 * 359.75325 * 7 6 5 9 9 C 1.53095 * 109.47858 * 67.64973 * 3 2 1 10 10 C 1.53182 * 109.16192 * 62.37091 * 9 3 2 11 11 C 1.53203 * 109.04254 * 56.98098 * 10 9 3 12 12 C 1.53088 * 109.14990 * 303.02410 * 11 10 9 13 13 H 1.09003 * 109.48163 * 177.59044 * 12 11 10 14 14 C 1.50695 * 109.48217 * 297.61535 * 12 11 10 15 15 H 1.07997 * 120.00138 * 5.30110 * 14 12 11 16 16 C 1.37877 * 120.00254 * 185.29991 * 14 12 11 17 17 N 1.31516 * 119.99686 * 355.09075 * 16 14 12 18 18 Si 1.86797 * 120.00410 * 175.08979 * 16 14 12 19 19 H 1.48500 * 109.47246 * 270.00188 * 18 16 14 20 20 H 1.48504 * 109.46672 * 30.00035 * 18 16 14 21 21 H 1.48497 * 109.47224 * 149.99828 * 18 16 14 22 22 O 1.42904 * 109.42515 * 57.60784 * 12 11 10 23 23 H 1.09004 * 109.46774 * 175.29371 * 1 2 3 24 24 H 1.08998 * 109.47082 * 295.28935 * 1 2 3 25 25 H 1.08994 * 109.47441 * 55.29908 * 1 2 3 26 26 H 1.08999 * 109.46552 * 240.00338 * 2 1 3 27 27 H 1.08997 * 109.47007 * 120.00513 * 2 1 3 28 28 H 1.08000 * 122.53878 * 359.97438 * 5 4 3 29 29 H 1.07997 * 122.53920 * 179.97438 * 6 5 4 30 30 H 1.07996 * 125.20045 * 180.02562 * 7 6 5 31 31 H 1.08999 * 109.52018 * 182.27538 * 9 3 2 32 32 H 1.08997 * 109.52440 * 302.46340 * 9 3 2 33 33 H 1.09005 * 109.53749 * 176.84646 * 10 9 3 34 34 H 1.08993 * 109.54580 * 297.11142 * 10 9 3 35 35 H 1.08998 * 109.53675 * 183.11434 * 11 10 9 36 36 H 1.08998 * 109.51809 * 62.92124 * 11 10 9 37 37 H 0.97007 * 119.99906 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.3900 2.2056 -1.1252 5 6 1.8725 2.3077 -2.3645 6 6 1.1002 3.0622 -3.2309 7 6 -0.0092 3.5732 -2.6949 8 16 -0.1244 3.0924 -1.0070 9 6 1.6926 2.1067 1.3349 10 6 2.4053 1.3616 2.4677 11 6 3.9127 1.3599 2.1941 12 6 4.1740 0.7246 0.8260 13 1 5.2412 0.7592 0.6070 14 6 3.7103 -0.7092 0.8409 15 1 3.1959 -1.1014 1.7056 16 6 3.9428 -1.5203 -0.2496 17 7 4.4820 -1.0186 -1.3392 18 14 3.4920 -3.3317 -0.1794 19 1 4.6482 -4.1101 0.3331 20 1 2.3296 -3.5177 0.7259 21 1 3.1398 -3.8073 -1.5413 22 8 3.4579 1.4467 -0.1779 23 1 -0.3633 -1.0243 -0.0843 24 1 -0.3633 0.4390 0.9292 25 1 -0.3634 0.5850 -0.8448 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.7958 1.8374 -2.6690 29 1 1.3755 3.2254 -4.2623 30 1 -0.7291 4.1846 -3.2186 31 1 2.0196 3.1464 1.3204 32 1 0.6149 2.0651 1.4930 33 1 2.2073 1.8631 3.4151 34 1 2.0420 0.3351 2.5142 35 1 4.4227 0.7842 2.9665 36 1 4.2845 2.3845 2.1970 37 1 4.6453 -1.5892 -2.1065 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309365993.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:05 Heat of formation + Delta-G solvation = -5.861783 kcal Electronic energy + Delta-G solvation = -19672.733599 eV Core-core repulsion = 16928.121421 eV Total energy + Delta-G solvation = -2744.612178 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.31991 -36.91322 -33.27436 -32.50858 -32.41137 -29.42363 -28.01883 -25.71296 -24.03612 -23.04756 -22.38638 -20.48851 -18.53344 -18.17585 -16.98390 -16.08306 -15.17710 -14.95652 -14.40749 -14.19052 -13.89818 -13.36327 -12.89078 -12.72902 -12.20988 -12.07128 -11.84876 -11.77885 -11.59361 -11.34372 -11.20592 -11.02072 -10.72983 -10.65450 -10.40857 -10.30271 -10.01714 -9.84655 -9.58288 -9.23619 -8.69996 -8.35745 -8.13996 -7.88654 -7.69424 -6.04896 -4.04679 1.55519 2.11003 2.50563 3.24642 3.33339 3.34861 3.37479 4.35650 5.02058 5.32420 5.46208 5.50969 5.70296 5.76793 5.88688 6.03019 6.11631 6.16489 6.20819 6.22102 6.38279 6.43625 6.46571 6.61143 6.76087 6.78128 6.86233 6.92170 7.00621 7.04644 7.08320 7.13005 7.45403 7.59312 7.80989 7.90838 8.15720 8.75313 9.01250 9.49896 10.99169 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021378 B = 0.008851 C = 0.007870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.413173 B = 3162.663459 C = 3556.773452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.141 4.141 3 C 0.210 3.790 4 C -0.126 4.126 5 C -0.135 4.135 6 C -0.125 4.125 7 C -0.241 4.241 8 S 0.072 5.928 9 C -0.139 4.139 10 C -0.109 4.109 11 C -0.143 4.143 12 C 0.211 3.789 13 H 0.066 0.934 14 C -0.548 4.548 15 H 0.062 0.938 16 C 0.080 3.920 17 N -0.854 5.854 18 Si 0.873 3.127 19 H -0.279 1.279 20 H -0.271 1.271 21 H -0.285 1.285 22 O -0.361 6.361 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.047 0.953 26 H 0.073 0.927 27 H 0.125 0.875 28 H 0.150 0.850 29 H 0.132 0.868 30 H 0.154 0.846 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.041 0.959 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.180 5.993 0.952 9.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.179 4.179 3 C 0.167 3.833 4 C -0.243 4.243 5 C -0.163 4.163 6 C -0.156 4.156 7 C -0.376 4.376 8 S 0.334 5.666 9 C -0.177 4.177 10 C -0.147 4.147 11 C -0.181 4.181 12 C 0.155 3.845 13 H 0.083 0.917 14 C -0.585 4.585 15 H 0.080 0.920 16 C -0.126 4.126 17 N -0.490 5.490 18 Si 0.700 3.300 19 H -0.205 1.205 20 H -0.195 1.195 21 H -0.211 1.211 22 O -0.280 6.280 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.092 0.908 27 H 0.143 0.857 28 H 0.167 0.833 29 H 0.149 0.851 30 H 0.172 0.828 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.067 6.343 1.731 10.407 hybrid contribution 0.572 -1.362 -1.130 1.860 sum -7.495 4.981 0.600 9.019 Atomic orbital electron populations 1.22235 0.99568 1.00282 1.00501 1.22962 0.91283 0.96175 1.07461 1.19180 0.84321 0.92615 0.87164 1.24604 0.97450 1.02785 0.99480 1.20215 1.02302 1.01421 0.92362 1.20219 0.94986 0.99592 1.00841 1.25457 1.03836 1.09921 0.98422 1.83942 1.23390 1.49449 1.09780 1.22205 0.99442 0.99421 0.96674 1.21486 0.96497 1.00706 0.95987 1.22205 0.95316 0.99457 1.01163 1.19763 0.93093 0.89433 0.82186 0.91654 1.21311 1.39208 0.96054 1.01936 0.91992 1.24911 0.94825 0.97506 0.95329 1.70042 1.41031 1.34921 1.02968 0.86903 0.79061 0.86345 0.77647 1.20537 1.19538 1.21117 1.87958 1.13520 1.74417 1.52131 0.93913 0.93911 0.93448 0.90809 0.85710 0.83267 0.85054 0.82793 0.92514 0.92387 0.93881 0.90965 0.92336 0.93974 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 9.09 37.16 0.34 -2.80 16 2 C -0.14 -3.09 3.31 -26.73 -0.09 -3.17 16 3 C 0.21 4.45 0.82 -91.73 -0.08 4.37 16 4 C -0.13 -2.50 4.18 -36.01 -0.15 -2.65 16 5 C -0.13 -2.66 9.63 -41.21 -0.40 -3.06 16 6 C -0.12 -2.05 10.18 -41.21 -0.42 -2.47 16 7 C -0.24 -3.63 11.23 29.04 0.33 -3.30 16 8 S 0.07 1.17 20.46 -107.50 -2.20 -1.03 16 9 C -0.14 -2.62 4.21 -26.59 -0.11 -2.74 16 10 C -0.11 -2.03 5.63 -26.53 -0.15 -2.18 16 11 C -0.14 -2.89 5.60 -26.58 -0.15 -3.04 16 12 C 0.21 5.07 3.11 -27.84 -0.09 4.98 16 13 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 14 C -0.55 -13.61 4.62 -34.44 -0.16 -13.77 16 15 H 0.06 1.52 6.03 -52.49 -0.32 1.20 16 16 C 0.08 2.07 3.55 -17.82 -0.06 2.01 16 17 N -0.85 -23.34 12.96 55.43 0.72 -22.62 16 18 Si 0.87 20.17 29.54 -169.99 -5.02 15.15 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 O -0.36 -8.83 9.21 -35.23 -0.32 -9.16 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.04 0.73 6.82 -51.93 -0.35 0.37 16 25 H 0.05 0.87 5.63 -51.93 -0.29 0.57 16 26 H 0.07 1.84 6.61 -51.93 -0.34 1.50 16 27 H 0.13 2.86 2.95 -51.93 -0.15 2.71 16 28 H 0.15 3.26 7.91 -52.49 -0.42 2.85 16 29 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 30 H 0.15 1.84 8.06 -52.49 -0.42 1.41 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 1.01 6.19 -51.93 -0.32 0.68 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.40 5.53 -51.93 -0.29 1.11 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 289.59 15.07 4.36 4.36 Total: -1.00 -26.57 289.59 -8.65 -35.22 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.00 Total: 5.90 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: -1.19 Total: -27.83 kcal Atomic # 7 Polarization: -23.34 SS G_CDS: 0.72 Total: -22.62 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.32 Total: -9.16 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.20 Total: -1.03 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -26.57 -8.65 -35.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309365993.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.357 kcal (2) G-P(sol) polarization free energy of solvation -26.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds