Wall clock time and date at job start Mon Mar 30 2020 06:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46765 * 2 1 4 4 C 1.50696 * 109.49556 * 307.61883 * 3 2 1 5 5 C 1.33383 * 125.20480 * 269.97528 * 4 3 2 6 6 C 1.38427 * 114.92294 * 179.97438 * 5 4 3 7 7 C 1.33388 * 114.91956 * 0.02562 * 6 5 4 8 8 S 1.75885 * 109.59335 * 359.75325 * 7 6 5 9 9 C 1.53095 * 109.47858 * 67.64973 * 3 2 1 10 10 C 1.53182 * 109.16192 * 62.37091 * 9 3 2 11 11 C 1.53203 * 109.04254 * 56.98098 * 10 9 3 12 12 C 1.53088 * 109.14990 * 303.02410 * 11 10 9 13 13 H 1.09003 * 109.48163 * 177.59044 * 12 11 10 14 14 C 1.50695 * 109.48217 * 297.61535 * 12 11 10 15 15 H 1.07997 * 120.00138 * 5.30110 * 14 12 11 16 16 C 1.37877 * 120.00254 * 185.29991 * 14 12 11 17 17 N 1.31516 * 119.99686 * 355.09075 * 16 14 12 18 18 Si 1.86797 * 120.00410 * 175.08979 * 16 14 12 19 19 H 1.48500 * 109.47246 * 270.00188 * 18 16 14 20 20 H 1.48504 * 109.46672 * 30.00035 * 18 16 14 21 21 H 1.48497 * 109.47224 * 149.99828 * 18 16 14 22 22 O 1.42904 * 109.42515 * 57.60784 * 12 11 10 23 23 H 1.09004 * 109.46774 * 175.29371 * 1 2 3 24 24 H 1.08998 * 109.47082 * 295.28935 * 1 2 3 25 25 H 1.08994 * 109.47441 * 55.29908 * 1 2 3 26 26 H 1.08999 * 109.46552 * 240.00338 * 2 1 3 27 27 H 1.08997 * 109.47007 * 120.00513 * 2 1 3 28 28 H 1.08000 * 122.53878 * 359.97438 * 5 4 3 29 29 H 1.07997 * 122.53920 * 179.97438 * 6 5 4 30 30 H 1.07996 * 125.20045 * 180.02562 * 7 6 5 31 31 H 1.08999 * 109.52018 * 182.27538 * 9 3 2 32 32 H 1.08997 * 109.52440 * 302.46340 * 9 3 2 33 33 H 1.09005 * 109.53749 * 176.84646 * 10 9 3 34 34 H 1.08993 * 109.54580 * 297.11142 * 10 9 3 35 35 H 1.08998 * 109.53675 * 183.11434 * 11 10 9 36 36 H 1.08998 * 109.51809 * 62.92124 * 11 10 9 37 37 H 0.97007 * 119.99906 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.3900 2.2056 -1.1252 5 6 1.8725 2.3077 -2.3645 6 6 1.1002 3.0622 -3.2309 7 6 -0.0092 3.5732 -2.6949 8 16 -0.1244 3.0924 -1.0070 9 6 1.6926 2.1067 1.3349 10 6 2.4053 1.3616 2.4677 11 6 3.9127 1.3599 2.1941 12 6 4.1740 0.7246 0.8260 13 1 5.2412 0.7592 0.6070 14 6 3.7103 -0.7092 0.8409 15 1 3.1959 -1.1014 1.7056 16 6 3.9428 -1.5203 -0.2496 17 7 4.4820 -1.0186 -1.3392 18 14 3.4920 -3.3317 -0.1794 19 1 4.6482 -4.1101 0.3331 20 1 2.3296 -3.5177 0.7259 21 1 3.1398 -3.8073 -1.5413 22 8 3.4579 1.4467 -0.1779 23 1 -0.3633 -1.0243 -0.0843 24 1 -0.3633 0.4390 0.9292 25 1 -0.3634 0.5850 -0.8448 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.7958 1.8374 -2.6690 29 1 1.3755 3.2254 -4.2623 30 1 -0.7291 4.1846 -3.2186 31 1 2.0196 3.1464 1.3204 32 1 0.6149 2.0651 1.4930 33 1 2.2073 1.8631 3.4151 34 1 2.0420 0.3351 2.5142 35 1 4.4227 0.7842 2.9665 36 1 4.2845 2.3845 2.1970 37 1 4.6453 -1.5892 -2.1065 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309365993.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:05 Heat of formation + Delta-G solvation = -19.596728 kcal Electronic energy + Delta-G solvation = -19673.329191 eV Core-core repulsion = 16928.121421 eV Total energy + Delta-G solvation = -2745.207770 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.98740 -38.32571 -34.99821 -34.40935 -34.02672 -31.05872 -29.53464 -27.51115 -25.56045 -24.67168 -23.91589 -22.16871 -20.02453 -19.78402 -18.64100 -17.75498 -16.77309 -16.61521 -15.96609 -15.85861 -15.59262 -15.00584 -14.54129 -14.31157 -13.78352 -13.58379 -13.42175 -13.27666 -13.11213 -12.93811 -12.80528 -12.72974 -12.50836 -12.37710 -12.12876 -11.74195 -11.61708 -11.44975 -11.23645 -10.98450 -10.51048 -10.31271 -9.71715 -9.29743 -9.17530 -8.04344 -6.06775 0.20548 0.76704 1.17502 1.37905 1.41878 1.47747 1.96894 2.42323 3.15081 3.67771 3.92020 4.14861 4.22312 4.31122 4.43242 4.50758 4.54220 4.68954 4.73035 4.84341 4.86155 4.87655 4.94364 5.07448 5.22413 5.28152 5.31844 5.35047 5.40176 5.48348 5.58692 5.65731 5.70661 5.74873 5.87166 6.10338 6.24549 6.79918 7.20464 7.51131 9.00260 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021378 B = 0.008851 C = 0.007870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.413173 B = 3162.663459 C = 3556.773452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.134 4.134 3 C 0.202 3.798 4 C -0.164 4.164 5 C -0.150 4.150 6 C -0.142 4.142 7 C -0.220 4.220 8 S 0.120 5.880 9 C -0.134 4.134 10 C -0.106 4.106 11 C -0.137 4.137 12 C 0.205 3.795 13 H 0.027 0.973 14 C -0.538 4.538 15 H 0.068 0.932 16 C 0.039 3.961 17 N -0.892 5.892 18 Si 0.923 3.077 19 H -0.277 1.277 20 H -0.259 1.259 21 H -0.293 1.293 22 O -0.389 6.389 23 H 0.048 0.952 24 H 0.064 0.936 25 H 0.050 0.950 26 H 0.031 0.969 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.154 0.846 30 H 0.196 0.804 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.042 7.149 2.058 12.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.172 4.172 3 C 0.160 3.840 4 C -0.281 4.281 5 C -0.180 4.180 6 C -0.172 4.172 7 C -0.355 4.355 8 S 0.383 5.617 9 C -0.171 4.171 10 C -0.143 4.143 11 C -0.175 4.175 12 C 0.149 3.851 13 H 0.044 0.956 14 C -0.575 4.575 15 H 0.085 0.915 16 C -0.163 4.163 17 N -0.530 5.530 18 Si 0.749 3.251 19 H -0.202 1.202 20 H -0.183 1.183 21 H -0.220 1.220 22 O -0.309 6.309 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.130 0.870 28 H 0.128 0.872 29 H 0.171 0.829 30 H 0.213 0.787 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.937 7.494 2.862 13.563 hybrid contribution 1.440 -1.642 -1.511 2.656 sum -9.497 5.851 1.351 11.236 Atomic orbital electron populations 1.22147 0.96878 1.01075 1.01749 1.22694 0.93617 0.96291 1.04582 1.19352 0.82475 0.92844 0.89322 1.24620 1.00055 1.04413 0.98986 1.20183 1.01739 1.02418 0.93629 1.20292 0.95366 0.99918 1.01635 1.25955 1.03364 1.08332 0.97836 1.83638 1.19937 1.47749 1.10366 1.22159 1.00711 0.99132 0.95143 1.21482 0.94673 1.00723 0.97456 1.22092 0.97204 0.99513 0.98720 1.19669 0.91303 0.89809 0.84305 0.95562 1.21504 1.37983 0.96477 1.01554 0.91465 1.25484 0.95044 1.00643 0.95127 1.70179 1.43222 1.35914 1.03638 0.86109 0.79163 0.82604 0.77251 1.20246 1.18260 1.21954 1.87886 1.15967 1.74285 1.52774 0.93303 0.91717 0.93120 0.94982 0.87044 0.87247 0.82884 0.78726 0.92332 0.90263 0.90474 0.91718 0.91506 0.93289 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.70 9.09 71.98 0.65 -5.05 16 2 C -0.13 -5.87 3.31 30.59 0.10 -5.77 16 3 C 0.20 8.56 0.82 -11.51 -0.01 8.55 16 4 C -0.16 -6.42 4.18 24.59 0.10 -6.32 16 5 C -0.15 -6.06 9.63 21.22 0.20 -5.86 16 6 C -0.14 -4.43 10.18 21.22 0.22 -4.21 16 7 C -0.22 -5.80 11.23 66.72 0.75 -5.05 16 8 S 0.12 3.52 20.46 -56.49 -1.16 2.36 16 9 C -0.13 -4.75 4.21 30.69 0.13 -4.62 16 10 C -0.11 -3.69 5.63 30.72 0.17 -3.52 16 11 C -0.14 -5.47 5.60 30.69 0.17 -5.29 16 12 C 0.21 10.21 3.11 29.88 0.09 10.30 16 13 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 14 C -0.54 -27.36 4.62 25.60 0.12 -27.25 16 15 H 0.07 3.30 6.03 -2.91 -0.02 3.28 16 16 C 0.04 2.09 3.55 84.65 0.30 2.39 16 17 N -0.89 -51.54 12.96 21.45 0.28 -51.26 16 18 Si 0.92 42.30 29.54 68.60 2.03 44.32 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 22 O -0.39 -19.85 9.21 -148.98 -1.37 -21.22 16 23 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 24 H 0.06 1.99 6.82 -2.39 -0.02 1.97 16 25 H 0.05 1.75 5.63 -2.39 -0.01 1.73 16 26 H 0.03 1.64 6.61 -2.39 -0.02 1.63 16 27 H 0.11 5.10 2.95 -2.39 -0.01 5.09 16 28 H 0.11 5.21 7.91 -2.91 -0.02 5.18 16 29 H 0.15 3.99 8.06 -2.91 -0.02 3.96 16 30 H 0.20 3.54 8.06 -2.91 -0.02 3.51 16 31 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.08 2.46 6.19 -2.39 -0.01 2.45 16 33 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.06 2.36 5.53 -2.39 -0.01 2.34 16 35 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 Total: -1.00 -60.29 289.59 3.85 -56.45 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 1.07 Total: 21.03 kcal Atomic # 6 Polarization: -54.68 SS G_CDS: 3.00 Total: -51.68 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 0.28 Total: -51.26 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -1.37 Total: -21.22 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -1.16 Total: 2.36 kcal Total: -60.29 3.85 -56.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309365993.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.849 kcal (2) G-P(sol) polarization free energy of solvation -60.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds