Wall clock time and date at job start Mon Mar 30 2020 06:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33388 * 125.20360 * 2 1 4 4 C 1.38418 * 114.91895 * 179.86003 * 3 2 1 5 5 C 1.33385 * 114.92370 * 0.43296 * 4 3 2 6 6 C 1.50702 * 125.20601 * 179.79376 * 5 4 3 7 7 C 1.53000 * 109.82074 * 270.69927 * 6 5 4 8 8 C 1.54383 * 109.83434 * 149.81507 * 6 5 4 9 9 C 1.55448 * 102.18359 * 219.18422 * 8 6 5 10 10 C 1.54938 * 100.99385 * 34.03615 * 9 8 6 11 11 C 1.53002 * 110.31052 * 204.69192 * 10 9 8 12 12 C 1.50701 * 110.39497 * 82.56734 * 10 9 8 13 13 H 1.08002 * 119.99956 * 2.77980 * 12 10 9 14 14 C 1.37875 * 119.99993 * 182.78698 * 12 10 9 15 15 N 1.31515 * 120.00138 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99890 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47015 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47021 * 119.99858 * 16 14 12 19 19 H 1.48498 * 109.47010 * 239.99989 * 16 14 12 20 20 O 1.43243 * 109.83209 * 31.58397 * 6 5 4 21 21 S 1.75884 * 109.59557 * 359.76992 * 5 4 3 22 22 H 1.09002 * 109.47152 * 269.69149 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.69249 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.69230 * 1 2 3 25 25 H 1.07997 * 122.53840 * 0.02562 * 3 2 1 26 26 H 1.08010 * 122.54076 * 180.20340 * 4 3 2 27 27 H 1.08999 * 109.47150 * 59.30381 * 7 6 5 28 28 H 1.09007 * 109.46940 * 179.29670 * 7 6 5 29 29 H 1.08997 * 109.47266 * 299.29902 * 7 6 5 30 30 H 1.09005 * 110.84601 * 337.31780 * 8 6 5 31 31 H 1.08993 * 110.85024 * 100.93869 * 8 6 5 32 32 H 1.09003 * 111.05870 * 276.11801 * 9 8 6 33 33 H 1.09002 * 111.18276 * 152.01406 * 9 8 6 34 34 H 1.09004 * 109.47125 * 177.16305 * 11 10 9 35 35 H 1.09000 * 109.47190 * 297.16835 * 11 10 9 36 36 H 1.09000 * 109.47381 * 57.16427 * 11 10 9 37 37 H 0.96998 * 120.00122 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6379 0.8428 0.0031 5 6 3.9750 -0.4477 -0.0036 6 6 5.3860 -0.9771 -0.0065 7 6 5.8777 -1.1355 -1.4466 8 6 5.4356 -2.3402 0.7167 9 6 6.7744 -2.2469 1.5011 10 6 6.8094 -0.7371 1.8474 11 6 8.2515 -0.2761 2.0680 12 6 5.9793 -0.4604 3.0744 13 1 5.5044 -1.2755 3.6002 14 6 5.8259 0.8334 3.5255 15 7 6.4044 1.8260 2.8854 16 14 4.7963 1.1765 5.0460 17 1 4.2584 -0.1012 5.5781 18 1 5.6416 1.8259 6.0799 19 1 3.6712 2.0774 4.6889 20 8 6.2444 -0.0767 0.7037 21 16 2.5210 -1.4372 -0.0078 22 1 -0.3633 -0.0055 1.0277 23 1 -0.3633 -0.8872 -0.5186 24 1 -0.3633 0.8928 -0.5091 25 1 1.8669 2.0894 0.0004 26 1 4.3721 1.6350 0.0066 27 1 5.8436 -0.1696 -1.9506 28 1 6.9026 -1.5067 -1.4419 29 1 5.2375 -1.8431 -1.9734 30 1 4.5928 -2.4478 1.3997 31 1 5.4614 -3.1596 -0.0014 32 1 7.6184 -2.5248 0.8698 33 1 6.7451 -2.8566 2.4042 34 1 8.2646 0.7967 2.2608 35 1 8.6751 -0.8041 2.9224 36 1 8.8424 -0.4925 1.1780 37 1 6.2969 2.7362 3.2030 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309434452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:33 Heat of formation + Delta-G solvation = -20.792695 kcal Electronic energy + Delta-G solvation = -19106.313123 eV Core-core repulsion = 16361.053492 eV Total energy + Delta-G solvation = -2745.259631 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.94923 -37.02181 -33.54095 -31.79508 -31.05408 -30.36802 -27.64469 -26.03651 -25.07399 -23.27908 -22.11837 -20.02528 -19.64055 -17.95215 -16.73676 -16.08980 -15.04993 -14.59484 -14.41013 -13.75691 -13.56620 -13.38542 -12.81972 -12.68393 -12.48295 -12.24734 -12.00829 -11.72163 -11.36844 -11.26183 -11.17378 -11.05902 -10.82090 -10.69930 -10.55961 -10.38288 -10.22439 -10.10555 -9.86498 -9.55346 -9.05952 -8.44547 -7.93801 -7.86709 -7.75381 -5.91198 -4.05780 1.61584 2.16796 2.58015 3.30965 3.39731 3.42895 3.46534 4.46131 4.99523 5.22698 5.35109 5.45830 5.47798 5.56486 5.62377 5.68253 5.92935 5.97390 6.07785 6.12001 6.16394 6.37790 6.41362 6.50191 6.56070 6.63687 6.77111 6.86497 6.90294 6.96446 7.09727 7.15135 7.21607 7.43596 7.81725 8.06580 8.37925 8.66990 9.04142 9.65453 11.10915 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016598 B = 0.009933 C = 0.007358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.572810 B = 2818.209408 C = 3804.680501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.204 4.204 3 C -0.129 4.129 4 C -0.118 4.118 5 C -0.140 4.140 6 C 0.178 3.822 7 C -0.142 4.142 8 C -0.138 4.138 9 C -0.144 4.144 10 C 0.231 3.769 11 C -0.128 4.128 12 C -0.534 4.534 13 H 0.054 0.946 14 C 0.087 3.913 15 N -0.859 5.859 16 Si 0.879 3.121 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.284 1.284 20 O -0.338 6.338 21 S 0.064 5.936 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.129 0.871 26 H 0.144 0.856 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.040 0.960 36 H 0.015 0.985 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.031 -4.825 -6.954 10.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.321 4.321 3 C -0.160 4.160 4 C -0.146 4.146 5 C -0.257 4.257 6 C 0.135 3.865 7 C -0.200 4.200 8 C -0.176 4.176 9 C -0.182 4.182 10 C 0.194 3.806 11 C -0.185 4.185 12 C -0.572 4.572 13 H 0.073 0.927 14 C -0.118 4.118 15 N -0.495 5.495 16 Si 0.707 3.293 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 O -0.258 6.258 21 S 0.327 5.673 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.147 0.853 26 H 0.161 0.839 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.059 0.941 36 H 0.034 0.966 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.243 -5.953 -7.018 11.120 hybrid contribution -0.468 1.643 1.103 2.034 sum -6.710 -4.310 -5.915 9.929 Atomic orbital electron populations 1.20218 0.88663 1.02247 1.02109 1.24265 0.99178 0.96040 1.12621 1.20081 0.93401 0.98582 1.03942 1.20006 0.95352 0.96892 1.02365 1.24870 0.97496 0.96190 1.07110 1.19994 0.84830 0.89435 0.92253 1.22053 1.00858 1.01617 0.95478 1.23117 0.99800 0.95774 0.98888 1.23325 0.95016 1.00914 0.98938 1.19901 0.91443 0.84452 0.84806 1.21712 0.94740 1.04883 0.97211 1.21270 1.32615 0.92859 1.10459 0.92729 1.24876 0.94672 0.96344 0.95886 1.69965 1.42079 0.99071 1.38417 0.86760 0.80592 0.78413 0.83568 1.19838 1.21046 1.20961 1.88645 1.60130 1.36242 1.40778 1.83785 0.97687 1.10393 1.75418 0.91402 0.91943 0.91198 0.85304 0.83856 0.92289 0.92135 0.92756 0.90704 0.92125 0.92912 0.91366 0.89384 0.94130 0.96628 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.38 36.01 0.37 -0.55 16 2 C -0.20 -3.40 6.51 -36.00 -0.23 -3.64 16 3 C -0.13 -2.34 10.05 -41.21 -0.41 -2.76 16 4 C -0.12 -2.46 9.65 -41.21 -0.40 -2.86 16 5 C -0.14 -2.86 5.22 -36.00 -0.19 -3.05 16 6 C 0.18 3.68 1.18 -91.05 -0.11 3.58 16 7 C -0.14 -2.47 8.71 37.16 0.32 -2.15 16 8 C -0.14 -2.68 5.44 -24.71 -0.13 -2.82 16 9 C -0.14 -2.99 6.03 -24.41 -0.15 -3.13 16 10 C 0.23 5.67 0.73 -90.75 -0.07 5.61 16 11 C -0.13 -3.06 8.72 37.16 0.32 -2.73 16 12 C -0.53 -14.49 8.04 -34.44 -0.28 -14.77 16 13 H 0.05 1.50 7.72 -52.49 -0.41 1.09 16 14 C 0.09 2.40 5.28 -17.82 -0.09 2.31 16 15 N -0.86 -24.24 11.07 55.43 0.61 -23.62 16 16 Si 0.88 21.55 29.54 -169.99 -5.02 16.53 16 17 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 20 O -0.34 -8.39 9.10 -35.23 -0.32 -8.71 16 21 S 0.06 1.12 21.98 -107.50 -2.36 -1.24 16 22 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 26 H 0.14 3.25 7.95 -52.48 -0.42 2.83 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.54 7.14 -51.93 -0.37 1.17 16 31 H 0.06 1.01 7.82 -51.93 -0.41 0.60 16 32 H 0.05 0.99 8.06 -51.93 -0.42 0.57 16 33 H 0.07 1.38 7.99 -51.93 -0.41 0.96 16 34 H 0.09 2.33 6.21 -51.93 -0.32 2.01 16 35 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 313.33 15.07 4.72 4.72 Total: -1.00 -29.07 313.33 -9.10 -38.18 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.69 Total: 1.11 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: -1.04 Total: -26.96 kcal Atomic # 7 Polarization: -24.24 SS G_CDS: 0.61 Total: -23.62 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -0.32 Total: -8.71 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.36 Total: -1.24 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.07 -9.10 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309434452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.383 kcal (2) G-P(sol) polarization free energy of solvation -29.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds