Wall clock time and date at job start Mon Mar 30 2020 06:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33388 * 125.20360 * 2 1 4 4 C 1.38418 * 114.91895 * 179.86003 * 3 2 1 5 5 C 1.33385 * 114.92370 * 0.43296 * 4 3 2 6 6 C 1.50702 * 125.20601 * 179.79376 * 5 4 3 7 7 C 1.53000 * 109.82074 * 270.69927 * 6 5 4 8 8 C 1.54383 * 109.83434 * 149.81507 * 6 5 4 9 9 C 1.55448 * 102.18359 * 219.18422 * 8 6 5 10 10 C 1.54938 * 100.99385 * 34.03615 * 9 8 6 11 11 C 1.53002 * 110.31052 * 204.69192 * 10 9 8 12 12 C 1.50701 * 110.39497 * 82.56734 * 10 9 8 13 13 H 1.08002 * 119.99956 * 2.77980 * 12 10 9 14 14 C 1.37875 * 119.99993 * 182.78698 * 12 10 9 15 15 N 1.31515 * 120.00138 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 119.99890 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47015 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47021 * 119.99858 * 16 14 12 19 19 H 1.48498 * 109.47010 * 239.99989 * 16 14 12 20 20 O 1.43243 * 109.83209 * 31.58397 * 6 5 4 21 21 S 1.75884 * 109.59557 * 359.76992 * 5 4 3 22 22 H 1.09002 * 109.47152 * 269.69149 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.69249 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.69230 * 1 2 3 25 25 H 1.07997 * 122.53840 * 0.02562 * 3 2 1 26 26 H 1.08010 * 122.54076 * 180.20340 * 4 3 2 27 27 H 1.08999 * 109.47150 * 59.30381 * 7 6 5 28 28 H 1.09007 * 109.46940 * 179.29670 * 7 6 5 29 29 H 1.08997 * 109.47266 * 299.29902 * 7 6 5 30 30 H 1.09005 * 110.84601 * 337.31780 * 8 6 5 31 31 H 1.08993 * 110.85024 * 100.93869 * 8 6 5 32 32 H 1.09003 * 111.05870 * 276.11801 * 9 8 6 33 33 H 1.09002 * 111.18276 * 152.01406 * 9 8 6 34 34 H 1.09004 * 109.47125 * 177.16305 * 11 10 9 35 35 H 1.09000 * 109.47190 * 297.16835 * 11 10 9 36 36 H 1.09000 * 109.47381 * 57.16427 * 11 10 9 37 37 H 0.96998 * 120.00122 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6379 0.8428 0.0031 5 6 3.9750 -0.4477 -0.0036 6 6 5.3860 -0.9771 -0.0065 7 6 5.8777 -1.1355 -1.4466 8 6 5.4356 -2.3402 0.7167 9 6 6.7744 -2.2469 1.5011 10 6 6.8094 -0.7371 1.8474 11 6 8.2515 -0.2761 2.0680 12 6 5.9793 -0.4604 3.0744 13 1 5.5044 -1.2755 3.6002 14 6 5.8259 0.8334 3.5255 15 7 6.4044 1.8260 2.8854 16 14 4.7963 1.1765 5.0460 17 1 4.2584 -0.1012 5.5781 18 1 5.6416 1.8259 6.0799 19 1 3.6712 2.0774 4.6889 20 8 6.2444 -0.0767 0.7037 21 16 2.5210 -1.4372 -0.0078 22 1 -0.3633 -0.0055 1.0277 23 1 -0.3633 -0.8872 -0.5186 24 1 -0.3633 0.8928 -0.5091 25 1 1.8669 2.0894 0.0004 26 1 4.3721 1.6350 0.0066 27 1 5.8436 -0.1696 -1.9506 28 1 6.9026 -1.5067 -1.4419 29 1 5.2375 -1.8431 -1.9734 30 1 4.5928 -2.4478 1.3997 31 1 5.4614 -3.1596 -0.0014 32 1 7.6184 -2.5248 0.8698 33 1 6.7451 -2.8566 2.4042 34 1 8.2646 0.7967 2.2608 35 1 8.6751 -0.8041 2.9224 36 1 8.8424 -0.4925 1.1780 37 1 6.2969 2.7362 3.2030 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309434452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:32 Heat of formation + Delta-G solvation = -35.616826 kcal Electronic energy + Delta-G solvation = -19106.955946 eV Core-core repulsion = 16361.053492 eV Total energy + Delta-G solvation = -2745.902454 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.60536 -38.48695 -35.33938 -33.51447 -32.75103 -31.83206 -29.29533 -27.41934 -27.08481 -24.81061 -23.57220 -21.60601 -21.42196 -19.49008 -18.60354 -17.58575 -16.64996 -16.45233 -16.11789 -15.44883 -14.92187 -14.74179 -14.62358 -14.00338 -13.87175 -13.72664 -13.49785 -13.22675 -13.13927 -12.95220 -12.73706 -12.68325 -12.55003 -12.43362 -12.19135 -12.13645 -12.03624 -11.67639 -11.44037 -11.26042 -10.86603 -10.53863 -9.79523 -9.25103 -9.19191 -7.98954 -6.18612 0.19196 0.78032 1.13719 1.33886 1.37836 1.45826 1.96762 2.42579 3.16527 3.56659 3.79816 4.01972 4.06039 4.13104 4.47862 4.49023 4.54920 4.65291 4.69268 4.76022 4.84773 4.91660 4.93576 5.04217 5.06280 5.11237 5.14451 5.16282 5.28337 5.35029 5.45500 5.55210 5.65603 5.70576 5.77512 6.10196 6.36213 6.75323 7.12430 7.55868 9.01322 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016598 B = 0.009933 C = 0.007358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.572810 B = 2818.209408 C = 3804.680501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.192 4.192 3 C -0.154 4.154 4 C -0.137 4.137 5 C -0.169 4.169 6 C 0.164 3.836 7 C -0.135 4.135 8 C -0.130 4.130 9 C -0.138 4.138 10 C 0.217 3.783 11 C -0.122 4.122 12 C -0.543 4.543 13 H 0.044 0.956 14 C 0.045 3.955 15 N -0.882 5.882 16 Si 0.928 3.072 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.288 1.288 20 O -0.367 6.367 21 S 0.099 5.901 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.090 0.910 25 H 0.145 0.855 26 H 0.109 0.891 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.046 0.954 36 H 0.033 0.967 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.622 -6.546 -7.565 12.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.309 4.309 3 C -0.184 4.184 4 C -0.166 4.166 5 C -0.286 4.286 6 C 0.122 3.878 7 C -0.193 4.193 8 C -0.168 4.168 9 C -0.176 4.176 10 C 0.179 3.821 11 C -0.180 4.180 12 C -0.581 4.581 13 H 0.063 0.937 14 C -0.158 4.158 15 N -0.520 5.520 16 Si 0.755 3.245 17 H -0.195 1.195 18 H -0.204 1.204 19 H -0.215 1.215 20 O -0.288 6.288 21 S 0.362 5.638 22 H 0.096 0.904 23 H 0.100 0.900 24 H 0.108 0.892 25 H 0.163 0.837 26 H 0.127 0.873 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.833 -7.683 -7.627 13.363 hybrid contribution -0.016 2.161 1.267 2.505 sum -7.849 -5.522 -6.360 11.513 Atomic orbital electron populations 1.20400 0.85364 1.04278 1.03304 1.24849 1.01269 0.95071 1.09725 1.20182 0.92389 1.00139 1.05656 1.19970 0.96223 0.96545 1.03879 1.25012 0.98881 0.96844 1.07879 1.20345 0.84656 0.89287 0.93517 1.22000 1.01804 1.01928 0.93564 1.23091 0.98411 0.96260 0.99054 1.23246 0.96631 0.98086 0.99649 1.19963 0.90892 0.87012 0.84200 1.21616 0.95364 1.02796 0.98239 1.21548 1.32552 0.92491 1.11504 0.93732 1.25465 0.95739 0.96467 0.98085 1.70092 1.43254 0.99066 1.39579 0.85992 0.79256 0.78106 0.81194 1.19465 1.20363 1.21471 1.88588 1.61175 1.38101 1.40889 1.83533 0.95753 1.09764 1.74707 0.90433 0.89969 0.89168 0.83739 0.87251 0.93214 0.91305 0.90152 0.92193 0.88639 0.90758 0.91215 0.92547 0.93534 0.94822 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.60 10.38 71.24 0.74 -0.86 16 2 C -0.19 -5.98 6.51 24.59 0.16 -5.82 16 3 C -0.15 -5.50 10.05 21.21 0.21 -5.28 16 4 C -0.14 -5.86 9.65 21.21 0.20 -5.66 16 5 C -0.17 -6.88 5.22 24.59 0.13 -6.75 16 6 C 0.16 6.68 1.18 -11.07 -0.01 6.67 16 7 C -0.14 -4.50 8.71 71.98 0.63 -3.87 16 8 C -0.13 -4.82 5.44 31.91 0.17 -4.65 16 9 C -0.14 -5.51 6.03 32.10 0.19 -5.32 16 10 C 0.22 10.65 0.73 -10.88 -0.01 10.65 16 11 C -0.12 -5.89 8.72 71.98 0.63 -5.27 16 12 C -0.54 -29.78 8.04 25.60 0.21 -29.57 16 13 H 0.04 2.46 7.72 -2.91 -0.02 2.44 16 14 C 0.04 2.51 5.28 84.65 0.45 2.96 16 15 N -0.88 -51.37 11.07 21.45 0.24 -51.13 16 16 Si 0.93 44.78 29.54 68.60 2.03 46.80 16 17 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 19 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 20 O -0.37 -18.48 9.10 -148.98 -1.36 -19.84 16 21 S 0.10 3.26 21.98 -56.49 -1.24 2.02 16 22 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 25 H 0.14 4.53 8.06 -2.91 -0.02 4.51 16 26 H 0.11 5.31 7.95 -2.91 -0.02 5.29 16 27 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 29 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.06 2.38 7.14 -2.38 -0.02 2.36 16 31 H 0.10 2.83 7.82 -2.39 -0.02 2.81 16 32 H 0.07 2.61 8.06 -2.39 -0.02 2.59 16 33 H 0.07 2.71 7.99 -2.39 -0.02 2.70 16 34 H 0.06 3.06 6.21 -2.39 -0.01 3.05 16 35 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -63.64 313.33 4.40 -59.24 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 1.04 Total: 15.68 kcal Atomic # 6 Polarization: -56.47 SS G_CDS: 3.70 Total: -52.77 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 0.24 Total: -51.13 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -1.36 Total: -19.84 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: 3.26 SS G_CDS: -1.24 Total: 2.02 kcal Total: -63.64 4.40 -59.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309434452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.622 kcal (2) G-P(sol) polarization free energy of solvation -63.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds