Wall clock time and date at job start Mon Mar 30 2020 06:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.47096 * 2 1 4 4 C 1.50690 * 109.89354 * 305.93002 * 3 2 1 5 5 C 1.33396 * 125.20321 * 88.78997 * 4 3 2 6 6 C 1.38424 * 114.92076 * 179.85474 * 5 4 3 7 7 C 1.33383 * 114.92098 * 0.43213 * 6 5 4 8 8 S 1.75878 * 109.59442 * 359.76786 * 7 6 5 9 9 C 1.54378 * 109.82830 * 184.99915 * 3 2 1 10 10 C 1.55302 * 102.25652 * 261.84198 * 9 3 2 11 11 C 1.54951 * 100.94111 * 325.87179 * 10 9 3 12 12 C 1.53003 * 110.30669 * 277.42607 * 11 10 9 13 13 C 1.50694 * 110.31121 * 155.35677 * 11 10 9 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 11 10 15 15 C 1.37885 * 119.99902 * 179.97438 * 13 11 10 16 16 N 1.31516 * 119.99913 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 119.99854 * 179.72538 * 15 13 11 18 18 H 1.48504 * 109.47032 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46816 * 120.00323 * 17 15 13 20 20 H 1.48495 * 109.46630 * 240.00111 * 17 15 13 21 21 O 1.43234 * 109.83075 * 66.86700 * 3 2 1 22 22 H 1.09000 * 109.46829 * 59.99921 * 1 2 3 23 23 H 1.09001 * 109.46896 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47035 * 300.00226 * 1 2 3 25 25 H 1.08998 * 109.47449 * 240.00088 * 2 1 3 26 26 H 1.09000 * 109.47196 * 119.99680 * 2 1 3 27 27 H 1.07998 * 122.53640 * 0.02562 * 5 4 3 28 28 H 1.08002 * 122.53769 * 180.19954 * 6 5 4 29 29 H 1.08003 * 125.19961 * 179.79475 * 7 6 5 30 30 H 1.09004 * 110.84812 * 143.65232 * 9 3 2 31 31 H 1.09008 * 111.02688 * 20.11346 * 9 3 2 32 32 H 1.08998 * 111.13338 * 207.94993 * 10 9 3 33 33 H 1.09006 * 111.16549 * 83.79927 * 10 9 3 34 34 H 1.08994 * 109.47475 * 298.61101 * 12 11 10 35 35 H 1.09008 * 109.46818 * 58.61155 * 12 11 10 36 36 H 1.09001 * 109.46942 * 178.60210 * 12 11 10 37 37 H 0.97001 * 119.99646 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4270 2.2032 -1.1474 5 6 0.2706 2.8666 -1.0998 6 6 -0.0907 3.4942 -2.2794 7 6 0.7677 3.3331 -3.2876 8 16 2.1228 2.3459 -2.7563 9 6 3.5785 1.4540 -0.1266 10 6 4.0294 1.6281 1.3493 11 6 2.8957 2.5302 1.8988 12 6 3.1703 3.9959 1.5564 13 6 2.7663 2.3577 3.3902 14 1 3.4196 1.6754 3.9137 15 6 1.8138 3.0711 4.0867 16 7 1.0179 3.9017 3.4492 17 14 1.6483 2.8515 5.9344 18 1 2.6501 1.8624 6.4070 19 1 1.8814 4.1530 6.6103 20 1 0.2823 2.3650 6.2545 21 8 1.7029 2.0771 1.2391 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 -0.3362 2.9128 -0.2076 28 1 -1.0006 4.0677 -2.3772 29 1 0.6489 3.7461 -4.2784 30 1 3.9114 2.2946 -0.7356 31 1 3.9444 0.5121 -0.5354 32 1 4.9949 2.1306 1.4086 33 1 4.0554 0.6700 1.8685 34 1 4.1042 4.3093 2.0231 35 1 3.2491 4.1078 0.4750 36 1 2.3532 4.6149 1.9271 37 1 0.3481 4.4038 3.9393 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309438571.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:25 Heat of formation + Delta-G solvation = -17.841889 kcal Electronic energy + Delta-G solvation = -19264.653492 eV Core-core repulsion = 16519.521818 eV Total energy + Delta-G solvation = -2745.131675 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.24790 -36.94322 -33.94439 -32.07973 -31.12996 -29.36973 -28.30536 -25.49904 -24.95837 -23.03707 -22.07629 -20.08221 -19.56867 -18.24519 -16.63702 -16.46757 -15.19101 -14.89675 -14.51322 -14.11581 -13.77648 -13.14571 -12.85952 -12.56545 -12.22939 -12.16008 -12.03931 -11.75026 -11.50746 -11.18919 -11.01361 -10.92552 -10.79504 -10.57003 -10.45495 -10.32175 -10.24190 -10.07953 -9.98681 -9.43798 -9.02288 -8.50502 -8.13383 -8.01741 -7.98292 -5.96849 -4.13223 1.47018 2.05013 2.42939 3.28442 3.29151 3.37539 3.40641 4.41157 4.90668 5.18902 5.33703 5.40313 5.45145 5.51451 5.78476 5.86357 5.98326 6.00158 6.11322 6.22149 6.29707 6.40731 6.49194 6.52320 6.64044 6.68446 6.73942 6.83259 6.90259 6.95888 6.99780 7.01661 7.16978 7.36091 7.77489 8.16296 8.36271 8.64327 9.02909 9.57469 11.04435 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025491 B = 0.006996 C = 0.006822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.167533 B = 4001.492377 C = 4103.530946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C 0.169 3.831 4 C -0.144 4.144 5 C -0.126 4.126 6 C -0.126 4.126 7 C -0.234 4.234 8 S 0.063 5.937 9 C -0.150 4.150 10 C -0.140 4.140 11 C 0.233 3.767 12 C -0.147 4.147 13 C -0.521 4.521 14 H 0.062 0.938 15 C 0.081 3.919 16 N -0.858 5.858 17 Si 0.888 3.112 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 O -0.328 6.328 22 H 0.052 0.948 23 H 0.041 0.959 24 H 0.067 0.933 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.147 0.853 28 H 0.133 0.867 29 H 0.155 0.845 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.032 0.968 35 H 0.010 0.990 36 H 0.092 0.908 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.526 -3.409 -10.553 11.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C 0.125 3.875 4 C -0.261 4.261 5 C -0.155 4.155 6 C -0.157 4.157 7 C -0.369 4.369 8 S 0.325 5.675 9 C -0.188 4.188 10 C -0.178 4.178 11 C 0.196 3.804 12 C -0.205 4.205 13 C -0.559 4.559 14 H 0.080 0.920 15 C -0.124 4.124 16 N -0.494 5.494 17 Si 0.716 3.284 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.209 1.209 21 O -0.247 6.247 22 H 0.071 0.929 23 H 0.060 0.940 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.164 0.836 28 H 0.151 0.849 29 H 0.173 0.827 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.029 0.971 36 H 0.111 0.889 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.463 -3.771 -11.160 11.871 hybrid contribution -1.237 0.585 1.415 1.968 sum 0.226 -3.186 -9.745 10.256 Atomic orbital electron populations 1.21736 0.95618 1.00284 1.02734 1.21718 0.96914 0.94984 1.01289 1.20233 0.91822 0.90615 0.84780 1.25082 0.99036 1.04983 0.96971 1.20161 0.97453 0.98922 0.98965 1.20225 1.00780 1.01902 0.92795 1.25424 0.99738 1.08351 1.03367 1.83957 1.25373 1.51595 1.06567 1.23244 0.95120 1.01324 0.99154 1.23300 1.00328 1.01122 0.93041 1.19917 0.79558 0.89388 0.91574 1.22105 1.01700 1.00355 0.96301 1.21026 1.19057 1.25660 0.90130 0.91991 1.25012 0.95041 0.94344 0.98037 1.69961 1.19276 1.25147 1.35032 0.86615 0.78050 0.77967 0.85788 1.19726 1.21000 1.20913 1.88876 1.32887 1.75179 1.27759 0.92945 0.93973 0.91422 0.92640 0.91010 0.83577 0.84940 0.82725 0.91327 0.91584 0.91879 0.91624 0.94844 0.97073 0.88947 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.19 37.15 0.34 -2.15 16 2 C -0.11 -1.95 5.12 -26.73 -0.14 -2.09 16 3 C 0.17 3.32 0.86 -91.05 -0.08 3.24 16 4 C -0.14 -2.65 4.44 -36.01 -0.16 -2.81 16 5 C -0.13 -2.34 7.99 -41.21 -0.33 -2.67 16 6 C -0.13 -1.97 10.18 -41.21 -0.42 -2.39 16 7 C -0.23 -3.37 11.23 29.04 0.33 -3.04 16 8 S 0.06 0.97 21.99 -107.50 -2.36 -1.39 16 9 C -0.15 -2.76 5.25 -24.79 -0.13 -2.89 16 10 C -0.14 -2.90 6.01 -24.48 -0.15 -3.04 16 11 C 0.23 5.70 0.73 -90.74 -0.07 5.64 16 12 C -0.15 -3.60 8.61 37.16 0.32 -3.28 16 13 C -0.52 -14.06 8.30 -34.44 -0.29 -14.35 16 14 H 0.06 1.65 7.75 -52.49 -0.41 1.25 16 15 C 0.08 2.20 5.28 -17.82 -0.09 2.11 16 16 N -0.86 -24.05 10.98 55.43 0.61 -23.44 16 17 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 O -0.33 -7.98 8.91 -35.23 -0.31 -8.29 16 22 H 0.05 0.87 6.19 -51.93 -0.32 0.55 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.07 1.31 7.90 -51.93 -0.41 0.90 16 25 H 0.05 0.86 8.09 -51.93 -0.42 0.44 16 26 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 27 H 0.15 2.97 7.96 -52.49 -0.42 2.56 16 28 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 29 H 0.16 1.77 8.06 -52.48 -0.42 1.35 16 30 H 0.07 1.25 6.79 -51.93 -0.35 0.90 16 31 H 0.07 1.06 7.80 -51.92 -0.40 0.65 16 32 H 0.06 1.22 8.03 -51.93 -0.42 0.81 16 33 H 0.07 1.34 8.04 -51.93 -0.42 0.92 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.01 0.24 7.50 -51.92 -0.39 -0.15 16 36 H 0.09 2.51 5.96 -51.93 -0.31 2.20 16 37 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 LS Contribution 306.78 15.07 4.62 4.62 Total: -1.00 -28.21 306.78 -8.84 -37.05 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.52 Total: 3.27 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: -0.86 Total: -27.72 kcal Atomic # 7 Polarization: -24.05 SS G_CDS: 0.61 Total: -23.44 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -0.31 Total: -8.29 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.36 Total: -1.39 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.21 -8.84 -37.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309438571.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.208 kcal (2) G-P(sol) polarization free energy of solvation -28.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds