Wall clock time and date at job start Mon Mar 30 2020 06:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.47096 * 2 1 4 4 C 1.50690 * 109.89354 * 305.93002 * 3 2 1 5 5 C 1.33396 * 125.20321 * 88.78997 * 4 3 2 6 6 C 1.38424 * 114.92076 * 179.85474 * 5 4 3 7 7 C 1.33383 * 114.92098 * 0.43213 * 6 5 4 8 8 S 1.75878 * 109.59442 * 359.76786 * 7 6 5 9 9 C 1.54378 * 109.82830 * 184.99915 * 3 2 1 10 10 C 1.55302 * 102.25652 * 261.84198 * 9 3 2 11 11 C 1.54951 * 100.94111 * 325.87179 * 10 9 3 12 12 C 1.53003 * 110.30669 * 277.42607 * 11 10 9 13 13 C 1.50694 * 110.31121 * 155.35677 * 11 10 9 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 11 10 15 15 C 1.37885 * 119.99902 * 179.97438 * 13 11 10 16 16 N 1.31516 * 119.99913 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 119.99854 * 179.72538 * 15 13 11 18 18 H 1.48504 * 109.47032 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46816 * 120.00323 * 17 15 13 20 20 H 1.48495 * 109.46630 * 240.00111 * 17 15 13 21 21 O 1.43234 * 109.83075 * 66.86700 * 3 2 1 22 22 H 1.09000 * 109.46829 * 59.99921 * 1 2 3 23 23 H 1.09001 * 109.46896 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47035 * 300.00226 * 1 2 3 25 25 H 1.08998 * 109.47449 * 240.00088 * 2 1 3 26 26 H 1.09000 * 109.47196 * 119.99680 * 2 1 3 27 27 H 1.07998 * 122.53640 * 0.02562 * 5 4 3 28 28 H 1.08002 * 122.53769 * 180.19954 * 6 5 4 29 29 H 1.08003 * 125.19961 * 179.79475 * 7 6 5 30 30 H 1.09004 * 110.84812 * 143.65232 * 9 3 2 31 31 H 1.09008 * 111.02688 * 20.11346 * 9 3 2 32 32 H 1.08998 * 111.13338 * 207.94993 * 10 9 3 33 33 H 1.09006 * 111.16549 * 83.79927 * 10 9 3 34 34 H 1.08994 * 109.47475 * 298.61101 * 12 11 10 35 35 H 1.09008 * 109.46818 * 58.61155 * 12 11 10 36 36 H 1.09001 * 109.46942 * 178.60210 * 12 11 10 37 37 H 0.97001 * 119.99646 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4270 2.2032 -1.1474 5 6 0.2706 2.8666 -1.0998 6 6 -0.0907 3.4942 -2.2794 7 6 0.7677 3.3331 -3.2876 8 16 2.1228 2.3459 -2.7563 9 6 3.5785 1.4540 -0.1266 10 6 4.0294 1.6281 1.3493 11 6 2.8957 2.5302 1.8988 12 6 3.1703 3.9959 1.5564 13 6 2.7663 2.3577 3.3902 14 1 3.4196 1.6754 3.9137 15 6 1.8138 3.0711 4.0867 16 7 1.0179 3.9017 3.4492 17 14 1.6483 2.8515 5.9344 18 1 2.6501 1.8624 6.4070 19 1 1.8814 4.1530 6.6103 20 1 0.2823 2.3650 6.2545 21 8 1.7029 2.0771 1.2391 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 -0.3362 2.9128 -0.2076 28 1 -1.0006 4.0677 -2.3772 29 1 0.6489 3.7461 -4.2784 30 1 3.9114 2.2946 -0.7356 31 1 3.9444 0.5121 -0.5354 32 1 4.9949 2.1306 1.4086 33 1 4.0554 0.6700 1.8685 34 1 4.1042 4.3093 2.0231 35 1 3.2491 4.1078 0.4750 36 1 2.3532 4.6149 1.9271 37 1 0.3481 4.4038 3.9393 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309438571.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:24 Heat of formation + Delta-G solvation = -32.168925 kcal Electronic energy + Delta-G solvation = -19265.274759 eV Core-core repulsion = 16519.521818 eV Total energy + Delta-G solvation = -2745.752941 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.83686 -38.31489 -35.63351 -33.89710 -32.82547 -30.90080 -29.82888 -27.40797 -26.65005 -24.35092 -23.61786 -21.67496 -21.15360 -19.64984 -18.43617 -17.98914 -16.75178 -16.46286 -16.24039 -15.67626 -15.29207 -14.72604 -14.43972 -14.11504 -13.91388 -13.63096 -13.40423 -13.24599 -13.01495 -12.92281 -12.76924 -12.56392 -12.44972 -12.32075 -12.11119 -11.98521 -11.82382 -11.66336 -11.51632 -11.07769 -10.86338 -10.54578 -9.79272 -9.41930 -9.24097 -8.01560 -6.24568 0.20421 0.79519 1.17323 1.40234 1.42996 1.53089 1.97459 2.43799 3.09984 3.59944 3.76514 3.96171 3.99967 4.30480 4.33816 4.49237 4.53811 4.61417 4.72573 4.83540 4.84433 4.90685 4.94632 5.00114 5.03839 5.13016 5.17251 5.25707 5.33476 5.39266 5.46063 5.53010 5.62470 5.68240 5.73582 6.16578 6.37537 6.69927 7.17965 7.50329 8.98435 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025491 B = 0.006996 C = 0.006822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.167533 B = 4001.492377 C = 4103.530946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.158 3.842 4 C -0.173 4.173 5 C -0.138 4.138 6 C -0.143 4.143 7 C -0.216 4.216 8 S 0.103 5.897 9 C -0.140 4.140 10 C -0.136 4.136 11 C 0.220 3.780 12 C -0.135 4.135 13 C -0.541 4.541 14 H 0.057 0.943 15 C 0.035 3.965 16 N -0.886 5.886 17 Si 0.947 3.053 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.285 1.285 21 O -0.359 6.359 22 H 0.054 0.946 23 H 0.065 0.935 24 H 0.031 0.969 25 H 0.084 0.916 26 H 0.061 0.939 27 H 0.112 0.888 28 H 0.152 0.848 29 H 0.192 0.808 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.035 0.965 35 H 0.019 0.981 36 H 0.060 0.940 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.344 -4.191 -12.533 13.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C 0.116 3.884 4 C -0.290 4.290 5 C -0.168 4.168 6 C -0.174 4.174 7 C -0.351 4.351 8 S 0.365 5.635 9 C -0.178 4.178 10 C -0.174 4.174 11 C 0.183 3.817 12 C -0.193 4.193 13 C -0.578 4.578 14 H 0.075 0.925 15 C -0.168 4.168 16 N -0.523 5.523 17 Si 0.773 3.227 18 H -0.190 1.190 19 H -0.205 1.205 20 H -0.211 1.211 21 O -0.279 6.279 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.050 0.950 25 H 0.103 0.897 26 H 0.079 0.921 27 H 0.130 0.870 28 H 0.170 0.830 29 H 0.209 0.791 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.038 0.962 36 H 0.079 0.921 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.292 -4.562 -13.142 14.099 hybrid contribution -1.500 0.833 1.943 2.592 sum 0.793 -3.729 -11.199 11.830 Atomic orbital electron populations 1.21637 0.95584 1.01243 1.01067 1.21733 0.96974 0.94008 1.02081 1.20478 0.92924 0.91432 0.83609 1.25000 0.99577 1.05719 0.98667 1.20109 0.97584 1.00093 0.99037 1.20324 1.02268 1.02681 0.92081 1.25883 0.98292 1.06549 1.04400 1.83735 1.24972 1.51242 1.03534 1.23218 0.94028 1.02982 0.97570 1.23198 0.99436 1.00266 0.94501 1.19923 0.81155 0.89872 0.90776 1.21951 1.00416 1.00387 0.96589 1.21394 1.18929 1.25382 0.92141 0.92454 1.25713 0.94914 0.94231 1.01942 1.70108 1.19823 1.26013 1.36334 0.85689 0.77774 0.78030 0.81169 1.19037 1.20505 1.21116 1.88796 1.33093 1.75798 1.30180 0.92725 0.91577 0.94955 0.89737 0.92067 0.87022 0.83032 0.79057 0.91087 0.88584 0.90829 0.91719 0.94577 0.96179 0.92114 0.93392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 9.19 71.98 0.66 -4.02 16 2 C -0.11 -3.75 5.12 30.59 0.16 -3.59 16 3 C 0.16 6.13 0.86 -11.07 -0.01 6.12 16 4 C -0.17 -6.20 4.44 24.59 0.11 -6.09 16 5 C -0.14 -5.16 7.99 21.22 0.17 -4.99 16 6 C -0.14 -4.25 10.18 21.21 0.22 -4.03 16 7 C -0.22 -5.48 11.23 66.72 0.75 -4.73 16 8 S 0.10 2.86 21.99 -56.49 -1.24 1.62 16 9 C -0.14 -4.88 5.25 31.85 0.17 -4.71 16 10 C -0.14 -5.51 6.01 32.05 0.19 -5.32 16 11 C 0.22 10.94 0.73 -10.87 -0.01 10.94 16 12 C -0.14 -6.77 8.61 71.98 0.62 -6.15 16 13 C -0.54 -29.79 8.30 25.60 0.21 -29.58 16 14 H 0.06 3.11 7.75 -2.91 -0.02 3.08 16 15 C 0.03 1.92 5.28 84.66 0.45 2.37 16 16 N -0.89 -51.51 10.98 21.45 0.24 -51.27 16 17 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 21 O -0.36 -17.93 8.91 -148.98 -1.33 -19.25 16 22 H 0.05 1.80 6.19 -2.39 -0.01 1.79 16 23 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.03 1.29 7.90 -2.39 -0.02 1.27 16 25 H 0.08 2.37 8.09 -2.39 -0.02 2.35 16 26 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.11 4.86 7.96 -2.91 -0.02 4.84 16 28 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 29 H 0.19 3.40 8.06 -2.91 -0.02 3.38 16 30 H 0.07 2.42 6.79 -2.38 -0.02 2.40 16 31 H 0.10 2.74 7.80 -2.38 -0.02 2.73 16 32 H 0.07 2.76 8.03 -2.39 -0.02 2.75 16 33 H 0.06 2.59 8.04 -2.38 -0.02 2.57 16 34 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.02 0.91 7.50 -2.38 -0.02 0.89 16 36 H 0.06 3.42 5.96 -2.39 -0.01 3.40 16 37 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -62.36 306.78 4.42 -57.94 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 1.04 Total: 18.89 kcal Atomic # 6 Polarization: -57.48 SS G_CDS: 3.68 Total: -53.80 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.24 Total: -51.27 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -1.33 Total: -19.25 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -1.24 Total: 1.62 kcal Total: -62.36 4.42 -57.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309438571.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.773 kcal (2) G-P(sol) polarization free energy of solvation -62.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds