Wall clock time and date at job start Mon Mar 30 2020 06:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47378 * 2 1 4 4 C 1.50695 * 109.82410 * 305.70068 * 3 2 1 5 5 C 1.33389 * 125.20134 * 89.14576 * 4 3 2 6 6 C 1.38433 * 114.92022 * 180.26674 * 5 4 3 7 7 C 1.33388 * 114.91766 * 0.02562 * 6 5 4 8 8 S 1.75879 * 109.59837 * 0.02562 * 7 6 5 9 9 C 1.54388 * 109.90684 * 184.76631 * 3 2 1 10 10 C 1.55308 * 102.25039 * 219.08775 * 9 3 2 11 11 C 1.54944 * 100.94147 * 34.13463 * 10 9 3 12 12 C 1.53001 * 110.39503 * 82.51213 * 11 10 9 13 13 C 1.50704 * 110.30781 * 204.63842 * 11 10 9 14 14 H 1.08007 * 119.99835 * 357.16698 * 13 11 10 15 15 C 1.37878 * 120.00180 * 177.16697 * 13 11 10 16 16 N 1.31515 * 119.99882 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00114 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47275 * 59.99528 * 17 15 13 19 19 H 1.48495 * 109.47318 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46689 * 299.99923 * 17 15 13 21 21 O 1.43240 * 109.82787 * 66.58769 * 3 2 1 22 22 H 1.08999 * 109.46870 * 59.99754 * 1 2 3 23 23 H 1.08999 * 109.47367 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47099 * 300.00086 * 1 2 3 25 25 H 1.08999 * 109.47099 * 239.99914 * 2 1 3 26 26 H 1.09007 * 109.47155 * 120.00436 * 2 1 3 27 27 H 1.07998 * 122.54399 * 0.25181 * 5 4 3 28 28 H 1.08000 * 122.53671 * 180.02562 * 6 5 4 29 29 H 1.08007 * 125.20125 * 179.97438 * 7 6 5 30 30 H 1.09002 * 110.84449 * 337.27579 * 9 3 2 31 31 H 1.08998 * 110.84662 * 100.89314 * 9 3 2 32 32 H 1.08994 * 111.12171 * 276.21036 * 10 9 3 33 33 H 1.08999 * 111.12077 * 152.04951 * 10 9 3 34 34 H 1.08995 * 109.47263 * 302.77931 * 12 11 10 35 35 H 1.09006 * 109.46867 * 62.78740 * 12 11 10 36 36 H 1.09006 * 109.47144 * 182.78082 * 12 11 10 37 37 H 0.96996 * 120.00093 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4305 2.2001 -1.1512 5 6 0.2769 2.8683 -1.1072 6 6 -0.0859 3.4845 -2.2925 7 6 0.7727 3.3160 -3.2992 8 16 2.1265 2.3305 -2.7613 9 6 3.5791 1.4558 -0.1206 10 6 3.9750 2.6097 0.8406 11 6 2.8905 2.4638 1.9376 12 6 3.2896 1.3801 2.9411 13 6 2.6812 3.7783 2.6442 14 1 3.2880 4.6334 2.3850 15 6 1.7150 3.8895 3.6215 16 7 0.9758 2.8485 3.9368 17 14 1.4550 5.5191 4.4969 18 1 1.0835 6.5600 3.5051 19 1 0.3663 5.3759 5.4964 20 1 2.7093 5.9167 5.1854 21 8 1.6972 2.0790 1.2365 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 -0.3283 2.9244 -0.2144 28 1 -0.9954 4.0580 -2.3944 29 1 0.6543 3.7219 -4.2931 30 1 4.0027 0.5090 0.2146 31 1 3.8862 1.6793 -1.1423 32 1 3.9035 3.5770 0.3435 33 1 4.9726 2.4539 1.2513 34 1 3.4485 0.4387 2.4153 35 1 4.2097 1.6740 3.4465 36 1 2.4949 1.2557 3.6768 37 1 0.2958 2.9267 4.6241 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309438573.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:30 Heat of formation + Delta-G solvation = -18.077871 kcal Electronic energy + Delta-G solvation = -19273.768800 eV Core-core repulsion = 16528.626892 eV Total energy + Delta-G solvation = -2745.141908 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.24802 -36.94103 -33.91011 -32.06184 -31.14198 -29.51920 -28.13343 -25.60371 -24.93807 -23.19961 -21.75011 -20.17949 -19.57274 -18.34359 -16.73826 -16.32265 -15.29979 -14.77747 -14.49644 -14.18464 -13.48056 -13.45154 -12.65131 -12.40193 -12.36640 -12.17003 -12.01672 -12.00292 -11.54748 -11.27631 -10.92340 -10.87912 -10.67423 -10.65112 -10.46161 -10.44116 -10.24063 -10.04674 -9.83073 -9.55847 -8.99331 -8.48913 -8.13548 -8.01716 -7.98355 -5.96162 -4.10719 1.47662 2.04753 2.42176 3.28873 3.32419 3.36997 3.40044 4.42852 4.92157 5.20116 5.31804 5.40352 5.46900 5.52239 5.76435 5.87479 5.97586 5.97973 6.11050 6.23106 6.28447 6.41321 6.50690 6.54474 6.62904 6.65985 6.76182 6.77394 6.88144 6.93169 6.99519 7.02393 7.14068 7.33930 7.78583 8.10242 8.35934 8.63574 9.04325 9.59247 11.06630 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020750 B = 0.007809 C = 0.007114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.065442 B = 3584.623393 C = 3935.226914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C 0.168 3.832 4 C -0.140 4.140 5 C -0.127 4.127 6 C -0.126 4.126 7 C -0.235 4.235 8 S 0.065 5.935 9 C -0.148 4.148 10 C -0.140 4.140 11 C 0.233 3.767 12 C -0.145 4.145 13 C -0.523 4.523 14 H 0.060 0.940 15 C 0.083 3.917 16 N -0.859 5.859 17 Si 0.887 3.113 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.277 1.277 21 O -0.325 6.325 22 H 0.051 0.949 23 H 0.041 0.959 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.146 0.854 28 H 0.132 0.868 29 H 0.155 0.845 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.012 0.988 35 H 0.035 0.965 36 H 0.087 0.913 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.734 -3.511 -10.455 11.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C 0.125 3.875 4 C -0.257 4.257 5 C -0.156 4.156 6 C -0.157 4.157 7 C -0.370 4.370 8 S 0.327 5.673 9 C -0.186 4.186 10 C -0.178 4.178 11 C 0.196 3.804 12 C -0.203 4.203 13 C -0.560 4.560 14 H 0.078 0.922 15 C -0.123 4.123 16 N -0.495 5.495 17 Si 0.714 3.286 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 O -0.244 6.244 22 H 0.070 0.930 23 H 0.060 0.940 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.163 0.837 28 H 0.150 0.850 29 H 0.173 0.827 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.031 0.969 35 H 0.054 0.946 36 H 0.106 0.894 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.666 -4.076 -10.959 11.810 hybrid contribution -1.277 1.515 0.930 2.189 sum 0.389 -2.561 -10.029 10.358 Atomic orbital electron populations 1.21733 0.95534 1.00281 1.02821 1.21778 0.97073 0.95135 1.01170 1.20237 0.91751 0.90364 0.85175 1.24967 0.99010 1.04847 0.96881 1.20136 0.97547 0.99022 0.98882 1.20221 1.00764 1.01975 0.92757 1.25458 0.99757 1.08456 1.03335 1.83913 1.25362 1.51810 1.06170 1.23255 0.95261 1.00270 0.99789 1.23294 1.00301 0.96877 0.97287 1.19898 0.79959 0.93169 0.87360 1.22100 1.01243 0.95847 1.01127 1.20939 1.20212 0.95736 1.19152 0.92188 1.24977 0.95180 0.96098 0.96037 1.69955 1.20571 1.28829 1.30129 0.86763 0.77790 0.84595 0.79431 1.20188 1.21236 1.20240 1.88888 1.32212 1.76263 1.27057 0.93005 0.94020 0.91215 0.92706 0.91170 0.83664 0.84977 0.82736 0.91019 0.91930 0.91729 0.91881 0.96915 0.94574 0.89409 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.20 37.16 0.34 -2.17 16 2 C -0.11 -2.00 5.11 -26.73 -0.14 -2.13 16 3 C 0.17 3.31 0.87 -91.05 -0.08 3.24 16 4 C -0.14 -2.60 4.52 -36.01 -0.16 -2.77 16 5 C -0.13 -2.37 8.01 -41.20 -0.33 -2.70 16 6 C -0.13 -1.98 10.18 -41.20 -0.42 -2.40 16 7 C -0.24 -3.41 11.23 29.04 0.33 -3.08 16 8 S 0.07 1.01 21.49 -107.50 -2.31 -1.30 16 9 C -0.15 -2.71 5.66 -24.78 -0.14 -2.85 16 10 C -0.14 -2.93 6.01 -24.48 -0.15 -3.08 16 11 C 0.23 5.70 0.72 -90.74 -0.07 5.63 16 12 C -0.15 -3.44 8.64 37.16 0.32 -3.12 16 13 C -0.52 -14.23 8.28 -34.44 -0.29 -14.51 16 14 H 0.06 1.62 7.77 -52.48 -0.41 1.22 16 15 C 0.08 2.26 5.28 -17.82 -0.09 2.16 16 16 N -0.86 -24.06 11.07 55.43 0.61 -23.44 16 17 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 O -0.32 -7.91 8.73 -35.23 -0.31 -8.22 16 22 H 0.05 0.87 6.19 -51.93 -0.32 0.54 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.07 1.37 7.89 -51.93 -0.41 0.96 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 1.27 8.06 -51.93 -0.42 0.86 16 27 H 0.15 2.96 7.95 -52.49 -0.42 2.54 16 28 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 29 H 0.16 1.78 8.06 -52.48 -0.42 1.36 16 30 H 0.07 1.22 7.49 -51.93 -0.39 0.83 16 31 H 0.06 1.05 6.20 -51.93 -0.32 0.73 16 32 H 0.06 1.40 8.05 -51.93 -0.42 0.98 16 33 H 0.06 1.22 8.04 -51.93 -0.42 0.80 16 34 H 0.01 0.26 7.38 -51.93 -0.38 -0.13 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 2.30 6.21 -51.93 -0.32 1.98 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 305.92 15.07 4.61 4.61 Total: -1.00 -28.26 305.92 -8.76 -37.02 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.48 Total: 3.03 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: -0.87 Total: -27.79 kcal Atomic # 7 Polarization: -24.06 SS G_CDS: 0.61 Total: -23.44 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.31 Total: -8.22 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.31 Total: -1.30 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.26 -8.76 -37.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309438573.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.945 kcal (2) G-P(sol) polarization free energy of solvation -28.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds