Wall clock time and date at job start Mon Mar 30 2020 06:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47378 * 2 1 4 4 C 1.50695 * 109.82410 * 305.70068 * 3 2 1 5 5 C 1.33389 * 125.20134 * 89.14576 * 4 3 2 6 6 C 1.38433 * 114.92022 * 180.26674 * 5 4 3 7 7 C 1.33388 * 114.91766 * 0.02562 * 6 5 4 8 8 S 1.75879 * 109.59837 * 0.02562 * 7 6 5 9 9 C 1.54388 * 109.90684 * 184.76631 * 3 2 1 10 10 C 1.55308 * 102.25039 * 219.08775 * 9 3 2 11 11 C 1.54944 * 100.94147 * 34.13463 * 10 9 3 12 12 C 1.53001 * 110.39503 * 82.51213 * 11 10 9 13 13 C 1.50704 * 110.30781 * 204.63842 * 11 10 9 14 14 H 1.08007 * 119.99835 * 357.16698 * 13 11 10 15 15 C 1.37878 * 120.00180 * 177.16697 * 13 11 10 16 16 N 1.31515 * 119.99882 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00114 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47275 * 59.99528 * 17 15 13 19 19 H 1.48495 * 109.47318 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46689 * 299.99923 * 17 15 13 21 21 O 1.43240 * 109.82787 * 66.58769 * 3 2 1 22 22 H 1.08999 * 109.46870 * 59.99754 * 1 2 3 23 23 H 1.08999 * 109.47367 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47099 * 300.00086 * 1 2 3 25 25 H 1.08999 * 109.47099 * 239.99914 * 2 1 3 26 26 H 1.09007 * 109.47155 * 120.00436 * 2 1 3 27 27 H 1.07998 * 122.54399 * 0.25181 * 5 4 3 28 28 H 1.08000 * 122.53671 * 180.02562 * 6 5 4 29 29 H 1.08007 * 125.20125 * 179.97438 * 7 6 5 30 30 H 1.09002 * 110.84449 * 337.27579 * 9 3 2 31 31 H 1.08998 * 110.84662 * 100.89314 * 9 3 2 32 32 H 1.08994 * 111.12171 * 276.21036 * 10 9 3 33 33 H 1.08999 * 111.12077 * 152.04951 * 10 9 3 34 34 H 1.08995 * 109.47263 * 302.77931 * 12 11 10 35 35 H 1.09006 * 109.46867 * 62.78740 * 12 11 10 36 36 H 1.09006 * 109.47144 * 182.78082 * 12 11 10 37 37 H 0.96996 * 120.00093 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4305 2.2001 -1.1512 5 6 0.2769 2.8683 -1.1072 6 6 -0.0859 3.4845 -2.2925 7 6 0.7727 3.3160 -3.2992 8 16 2.1265 2.3305 -2.7613 9 6 3.5791 1.4558 -0.1206 10 6 3.9750 2.6097 0.8406 11 6 2.8905 2.4638 1.9376 12 6 3.2896 1.3801 2.9411 13 6 2.6812 3.7783 2.6442 14 1 3.2880 4.6334 2.3850 15 6 1.7150 3.8895 3.6215 16 7 0.9758 2.8485 3.9368 17 14 1.4550 5.5191 4.4969 18 1 1.0835 6.5600 3.5051 19 1 0.3663 5.3759 5.4964 20 1 2.7093 5.9167 5.1854 21 8 1.6972 2.0790 1.2365 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 -0.3283 2.9244 -0.2144 28 1 -0.9954 4.0580 -2.3944 29 1 0.6543 3.7219 -4.2931 30 1 4.0027 0.5090 0.2146 31 1 3.8862 1.6793 -1.1423 32 1 3.9035 3.5770 0.3435 33 1 4.9726 2.4539 1.2513 34 1 3.4485 0.4387 2.4153 35 1 4.2097 1.6740 3.4465 36 1 2.4949 1.2557 3.6768 37 1 0.2958 2.9267 4.6241 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309438573.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:29 Heat of formation + Delta-G solvation = -32.468400 kcal Electronic energy + Delta-G solvation = -19274.392820 eV Core-core repulsion = 16528.626892 eV Total energy + Delta-G solvation = -2745.765928 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.83776 -38.31859 -35.59567 -33.88775 -32.83542 -31.08981 -29.60773 -27.45044 -26.69242 -24.52754 -23.30282 -21.72789 -21.17472 -19.76826 -18.46534 -17.95595 -16.69965 -16.57910 -16.17266 -15.58096 -15.22343 -15.00830 -14.10601 -14.00749 -13.97432 -13.79032 -13.39015 -13.37458 -13.05925 -12.99207 -12.80110 -12.52803 -12.37128 -12.30031 -12.21621 -11.98905 -11.82671 -11.65857 -11.35008 -11.20364 -10.83617 -10.53350 -9.78765 -9.42315 -9.25060 -8.02172 -6.23058 0.20210 0.78462 1.15476 1.40563 1.41855 1.48552 1.96800 2.43549 3.11257 3.58488 3.81103 3.93841 3.95674 4.29874 4.33658 4.47079 4.52234 4.62357 4.71826 4.79682 4.83035 4.88917 4.96485 5.02944 5.06904 5.11871 5.16018 5.25251 5.33483 5.37456 5.44299 5.54537 5.62295 5.68453 5.73492 6.15766 6.37626 6.68296 7.19033 7.50919 8.98870 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020750 B = 0.007809 C = 0.007114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.065442 B = 3584.623393 C = 3935.226914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 C 0.157 3.843 4 C -0.171 4.171 5 C -0.141 4.141 6 C -0.143 4.143 7 C -0.218 4.218 8 S 0.105 5.895 9 C -0.138 4.138 10 C -0.136 4.136 11 C 0.221 3.779 12 C -0.136 4.136 13 C -0.545 4.545 14 H 0.051 0.949 15 C 0.038 3.962 16 N -0.883 5.883 17 Si 0.942 3.058 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.268 1.268 21 O -0.356 6.356 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.032 0.968 25 H 0.083 0.917 26 H 0.061 0.939 27 H 0.112 0.888 28 H 0.152 0.848 29 H 0.192 0.808 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.033 0.967 35 H 0.038 0.962 36 H 0.056 0.944 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.521 -3.651 -12.772 13.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C 0.115 3.885 4 C -0.288 4.288 5 C -0.171 4.171 6 C -0.173 4.173 7 C -0.352 4.352 8 S 0.367 5.633 9 C -0.176 4.176 10 C -0.174 4.174 11 C 0.183 3.817 12 C -0.194 4.194 13 C -0.582 4.582 14 H 0.070 0.930 15 C -0.165 4.165 16 N -0.520 5.520 17 Si 0.768 3.232 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.194 1.194 21 O -0.276 6.276 22 H 0.072 0.928 23 H 0.083 0.917 24 H 0.051 0.949 25 H 0.101 0.899 26 H 0.079 0.921 27 H 0.130 0.870 28 H 0.170 0.830 29 H 0.210 0.790 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.463 -4.217 -13.279 14.149 hybrid contribution -1.529 1.559 1.565 2.686 sum 0.935 -2.658 -11.714 12.048 Atomic orbital electron populations 1.21626 0.95578 1.01196 1.01085 1.21779 0.97049 0.94125 1.02005 1.20484 0.92858 0.91220 0.83955 1.24949 0.99600 1.05599 0.98625 1.20107 0.97704 1.00223 0.99028 1.20323 1.02256 1.02761 0.92001 1.25916 0.98296 1.06636 1.04399 1.83673 1.25022 1.51455 1.03142 1.23240 0.94221 0.99864 1.00244 1.23173 0.99935 0.97409 0.96850 1.19919 0.81225 0.92094 0.88447 1.21952 1.00068 0.96864 1.00495 1.21310 1.20150 0.96940 1.19821 0.93049 1.25636 0.95114 0.98891 0.96835 1.70092 1.20989 1.30349 1.30574 0.85882 0.77920 0.81021 0.78343 1.20381 1.20915 1.19350 1.88811 1.32466 1.77082 1.29218 0.92792 0.91663 0.94860 0.89857 0.92071 0.87017 0.83010 0.79049 0.89386 0.89964 0.93047 0.90460 0.94839 0.94291 0.92534 0.93344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.71 9.20 71.98 0.66 -4.05 16 2 C -0.11 -3.80 5.11 30.59 0.16 -3.65 16 3 C 0.16 6.11 0.87 -11.07 -0.01 6.10 16 4 C -0.17 -6.19 4.52 24.59 0.11 -6.08 16 5 C -0.14 -5.28 8.01 21.22 0.17 -5.11 16 6 C -0.14 -4.27 10.18 21.22 0.22 -4.05 16 7 C -0.22 -5.54 11.23 66.72 0.75 -4.80 16 8 S 0.10 2.93 21.49 -56.49 -1.21 1.71 16 9 C -0.14 -4.80 5.66 31.86 0.18 -4.62 16 10 C -0.14 -5.60 6.01 32.05 0.19 -5.40 16 11 C 0.22 10.93 0.72 -10.87 -0.01 10.92 16 12 C -0.14 -6.50 8.64 71.98 0.62 -5.88 16 13 C -0.54 -30.35 8.28 25.60 0.21 -30.14 16 14 H 0.05 2.85 7.77 -2.91 -0.02 2.83 16 15 C 0.04 2.13 5.28 84.65 0.45 2.58 16 16 N -0.88 -51.24 11.07 21.45 0.24 -51.00 16 17 Si 0.94 44.23 29.54 68.60 2.03 46.26 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 21 O -0.36 -17.76 8.73 -148.98 -1.30 -19.06 16 22 H 0.05 1.79 6.19 -2.39 -0.01 1.78 16 23 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.03 1.35 7.89 -2.39 -0.02 1.33 16 25 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.06 2.17 8.06 -2.38 -0.02 2.15 16 27 H 0.11 4.85 7.95 -2.91 -0.02 4.83 16 28 H 0.15 3.80 8.06 -2.91 -0.02 3.77 16 29 H 0.19 3.43 8.06 -2.91 -0.02 3.40 16 30 H 0.09 2.75 7.49 -2.39 -0.02 2.74 16 31 H 0.08 2.51 6.20 -2.39 -0.01 2.50 16 32 H 0.05 2.21 8.05 -2.39 -0.02 2.19 16 33 H 0.08 2.90 8.04 -2.39 -0.02 2.88 16 34 H 0.03 1.40 7.38 -2.39 -0.02 1.38 16 35 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.06 3.05 6.21 -2.38 -0.01 3.04 16 37 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -62.50 305.92 4.49 -58.00 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 1.04 Total: 18.26 kcal Atomic # 6 Polarization: -57.87 SS G_CDS: 3.70 Total: -54.17 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.24 Total: -51.00 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -1.30 Total: -19.06 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -1.21 Total: 1.71 kcal Total: -62.50 4.49 -58.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309438573.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.536 kcal (2) G-P(sol) polarization free energy of solvation -62.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds