Wall clock time and date at job start Mon Mar 30 2020 06:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47194 * 2 1 4 4 C 1.50707 * 109.82083 * 59.43474 * 3 2 1 5 5 C 1.33379 * 125.20399 * 270.28428 * 4 3 2 6 6 C 1.38422 * 114.92253 * 179.86046 * 5 4 3 7 7 C 1.33392 * 114.91930 * 0.43354 * 6 5 4 8 8 S 1.75881 * 109.59420 * 359.76841 * 7 6 5 9 9 C 1.54379 * 109.82952 * 180.41283 * 3 2 1 10 10 C 1.55310 * 102.25184 * 98.15941 * 9 3 2 11 11 C 1.54938 * 100.94066 * 34.13057 * 10 9 3 12 12 C 1.53009 * 110.39483 * 82.51456 * 11 10 9 13 13 C 1.50700 * 110.31120 * 204.64050 * 11 10 9 14 14 H 1.08002 * 119.99651 * 352.68918 * 13 11 10 15 15 C 1.37874 * 120.00395 * 172.69292 * 13 11 10 16 16 N 1.31518 * 119.99724 * 353.69430 * 15 13 11 17 17 Si 1.86795 * 120.00411 * 173.69614 * 15 13 11 18 18 H 1.48500 * 109.47006 * 269.99973 * 17 15 13 19 19 H 1.48501 * 109.47585 * 150.00011 * 17 15 13 20 20 H 1.48502 * 109.46953 * 29.99715 * 17 15 13 21 21 O 1.43234 * 109.82904 * 298.54927 * 3 2 1 22 22 H 1.09005 * 109.46803 * 299.99679 * 1 2 3 23 23 H 1.08996 * 109.47416 * 59.99783 * 1 2 3 24 24 H 1.08999 * 109.47018 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47435 * 240.00212 * 2 1 3 26 26 H 1.08996 * 109.47416 * 120.00217 * 2 1 3 27 27 H 1.08002 * 122.54074 * 0.02562 * 5 4 3 28 28 H 1.08003 * 122.53910 * 180.19987 * 6 5 4 29 29 H 1.08001 * 125.20104 * 179.79228 * 7 6 5 30 30 H 1.09001 * 110.85102 * 216.34913 * 9 3 2 31 31 H 1.08999 * 110.85154 * 339.97154 * 9 3 2 32 32 H 1.08996 * 111.12434 * 276.21222 * 10 9 3 33 33 H 1.08998 * 111.12559 * 152.05089 * 10 9 3 34 34 H 1.09001 * 109.46940 * 177.06701 * 12 11 10 35 35 H 1.08999 * 109.46840 * 297.07084 * 12 11 10 36 36 H 1.08995 * 109.46890 * 57.06468 * 12 11 10 37 37 H 0.97000 * 120.00100 * 2.95172 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5306 2.1647 1.2208 5 6 0.3834 2.8414 1.2910 6 6 0.1228 3.4216 2.5205 7 6 1.0627 3.2235 3.4460 8 16 2.3617 2.2503 2.7686 9 6 3.5837 1.4522 -0.0105 10 6 3.9017 1.6733 -1.5145 11 6 2.7250 2.5906 -1.9321 12 6 3.0284 4.0457 -1.5692 13 6 2.4632 2.4650 -3.4109 14 1 3.1376 1.8943 -4.0321 15 6 1.3627 3.0786 -3.9708 16 7 0.4753 3.6682 -3.1997 17 14 1.1321 3.0725 -5.8244 18 1 1.7872 4.2704 -6.4086 19 1 -0.3181 3.0966 -6.1430 20 1 1.7441 1.8458 -6.3953 21 8 1.5948 2.1153 -1.1836 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 -0.2923 2.9279 0.4529 28 1 -0.7720 3.9945 2.7144 29 1 1.0307 3.6025 4.4568 30 1 3.9707 2.2736 0.5926 31 1 3.9800 0.4968 0.3334 32 1 3.8798 0.7317 -2.0632 33 1 4.8588 2.1787 -1.6435 34 1 2.2154 4.6837 -1.9158 35 1 3.1265 4.1374 -0.4875 36 1 3.9595 4.3524 -2.0457 37 1 0.6166 3.7087 -2.2409 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309438574.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:32 Heat of formation + Delta-G solvation = -24.006626 kcal Electronic energy + Delta-G solvation = -19361.326055 eV Core-core repulsion = 16615.927058 eV Total energy + Delta-G solvation = -2745.398998 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.44088 -37.07359 -34.17187 -32.00673 -31.35306 -29.40459 -28.33390 -25.67084 -24.65186 -23.09685 -22.05080 -20.32127 -19.68633 -18.40204 -17.13853 -16.68446 -15.28041 -14.87255 -14.32820 -14.01756 -13.70724 -13.26470 -13.16389 -12.75050 -12.44844 -12.24091 -12.01501 -11.84975 -11.63564 -11.24606 -11.11298 -10.80760 -10.79409 -10.69889 -10.54972 -10.40823 -10.35877 -10.15785 -10.05520 -9.64553 -8.79150 -8.39191 -8.22784 -8.12791 -8.06464 -6.26250 -4.07472 1.36649 1.94849 2.32917 3.17737 3.45097 3.48034 3.64002 4.54500 4.80507 5.07330 5.28023 5.32140 5.36228 5.50947 5.70312 5.77613 5.90093 5.91818 6.01077 6.09330 6.19527 6.32836 6.36345 6.38338 6.52413 6.56454 6.60062 6.66786 6.71869 6.84128 6.87711 6.89567 6.94308 7.03713 7.56077 8.18861 8.32490 8.60342 8.97813 9.75114 11.13782 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.025750 B = 0.007072 C = 0.006888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.114293 B = 3958.524878 C = 4064.040384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C 0.172 3.828 4 C -0.149 4.149 5 C -0.128 4.128 6 C -0.126 4.126 7 C -0.231 4.231 8 S 0.068 5.932 9 C -0.151 4.151 10 C -0.131 4.131 11 C 0.215 3.785 12 C -0.149 4.149 13 C -0.602 4.602 14 H 0.055 0.945 15 C 0.036 3.964 16 N -0.890 5.890 17 Si 1.066 2.934 18 H -0.288 1.288 19 H -0.285 1.285 20 H -0.290 1.290 21 O -0.341 6.341 22 H 0.051 0.949 23 H 0.069 0.931 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.146 0.854 28 H 0.134 0.866 29 H 0.157 0.843 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.021 0.979 36 H 0.043 0.957 37 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.508 -3.493 10.537 11.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C 0.129 3.871 4 C -0.266 4.266 5 C -0.157 4.157 6 C -0.157 4.157 7 C -0.366 4.366 8 S 0.330 5.670 9 C -0.189 4.189 10 C -0.169 4.169 11 C 0.178 3.822 12 C -0.207 4.207 13 C -0.639 4.639 14 H 0.073 0.927 15 C -0.173 4.173 16 N -0.526 5.526 17 Si 0.895 3.105 18 H -0.215 1.215 19 H -0.211 1.211 20 H -0.216 1.216 21 O -0.261 6.261 22 H 0.070 0.930 23 H 0.088 0.912 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.164 0.836 28 H 0.152 0.848 29 H 0.174 0.826 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.611 -3.534 9.869 10.803 hybrid contribution -0.033 0.177 0.918 0.936 sum 2.579 -3.357 10.787 11.588 Atomic orbital electron populations 1.21703 0.95384 1.00401 1.02867 1.21700 0.97159 0.94689 1.01260 1.20237 0.91941 0.90831 0.84110 1.25083 0.98697 1.05082 0.97762 1.20172 0.98113 0.99194 0.98211 1.20231 1.00328 1.02113 0.93067 1.25458 0.99262 1.08245 1.03683 1.83979 1.24491 1.52593 1.05927 1.23256 0.95068 1.01474 0.99091 1.23189 0.99985 1.00974 0.92771 1.20155 0.81594 0.88864 0.91602 1.22179 1.01040 1.00085 0.97357 1.21855 1.14486 1.37587 0.90016 0.92676 1.25693 0.92171 0.93097 1.06361 1.70626 1.33360 1.40060 1.08596 0.83597 0.76219 0.76060 0.74630 1.21523 1.21066 1.21581 1.88804 1.33202 1.73232 1.30853 0.93009 0.91200 0.93863 0.91100 0.92558 0.83638 0.84785 0.82582 0.91274 0.91332 0.91351 0.91861 0.91914 0.95965 0.93750 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.33 37.16 0.35 -2.20 16 2 C -0.11 -1.94 5.06 -26.73 -0.14 -2.08 16 3 C 0.17 3.34 0.86 -91.04 -0.08 3.26 16 4 C -0.15 -2.70 4.58 -36.00 -0.16 -2.86 16 5 C -0.13 -2.32 8.11 -41.21 -0.33 -2.66 16 6 C -0.13 -1.93 10.18 -41.21 -0.42 -2.35 16 7 C -0.23 -3.24 11.23 29.04 0.33 -2.92 16 8 S 0.07 1.02 22.01 -107.50 -2.37 -1.34 16 9 C -0.15 -2.73 5.27 -24.78 -0.13 -2.86 16 10 C -0.13 -2.71 6.02 -24.48 -0.15 -2.86 16 11 C 0.21 5.23 0.67 -90.74 -0.06 5.17 16 12 C -0.15 -3.52 8.50 37.16 0.32 -3.21 16 13 C -0.60 -16.50 8.25 -34.44 -0.28 -16.78 16 14 H 0.06 1.51 7.78 -52.49 -0.41 1.10 16 15 C 0.04 1.00 5.20 -17.82 -0.09 0.91 16 16 N -0.89 -26.27 12.92 55.43 0.72 -25.55 16 17 Si 1.07 24.91 29.91 -169.99 -5.08 19.82 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 21 O -0.34 -8.19 7.17 -35.23 -0.25 -8.44 16 22 H 0.05 0.87 6.28 -51.93 -0.33 0.55 16 23 H 0.07 1.41 7.74 -51.93 -0.40 1.01 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.15 2.91 7.94 -52.49 -0.42 2.50 16 28 H 0.13 1.74 8.06 -52.48 -0.42 1.32 16 29 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.07 1.23 6.91 -51.93 -0.36 0.87 16 31 H 0.07 1.08 7.82 -51.93 -0.41 0.68 16 32 H 0.07 1.42 8.05 -51.93 -0.42 1.00 16 33 H 0.06 1.22 8.04 -51.93 -0.42 0.80 16 34 H 0.06 1.63 6.21 -51.93 -0.32 1.31 16 35 H 0.02 0.48 7.63 -51.93 -0.40 0.08 16 36 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.29 8.49 4.97 -40.82 -0.20 8.29 16 LS Contribution 304.62 15.07 4.59 4.59 Total: -1.00 -29.24 304.62 -8.66 -37.90 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -5.41 Total: 4.45 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: -0.86 Total: -31.43 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 0.72 Total: -25.55 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: -0.25 Total: -8.44 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.08 Total: 19.82 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.37 Total: -1.34 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.24 -8.66 -37.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309438574.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.896 kcal (2) G-P(sol) polarization free energy of solvation -29.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds