Wall clock time and date at job start Mon Mar 30 2020 06:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33391 * 125.20292 * 2 1 4 4 C 1.38419 * 114.91926 * 179.86277 * 3 2 1 5 5 C 1.50700 * 122.53686 * 180.20011 * 4 3 2 6 6 H 1.09003 * 109.48075 * 215.24098 * 5 4 3 7 7 C 1.53094 * 109.48081 * 95.22260 * 5 4 3 8 8 C 1.53181 * 109.16490 * 182.40996 * 7 5 4 9 9 C 1.53179 * 109.03857 * 56.97591 * 8 7 5 10 10 C 1.53092 * 109.16195 * 303.02202 * 9 8 7 11 11 H 1.08993 * 109.48237 * 297.61087 * 10 9 8 12 12 C 1.50695 * 109.47801 * 177.58932 * 10 9 8 13 13 H 1.08000 * 120.00185 * 0.02562 * 12 10 9 14 14 C 1.37876 * 119.99959 * 180.02562 * 12 10 9 15 15 N 1.31510 * 120.00282 * 359.97438 * 14 12 10 16 16 Si 1.86809 * 120.00028 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47325 * 59.99651 * 16 14 12 18 18 H 1.48501 * 109.46860 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46587 * 299.99640 * 16 14 12 20 20 O 1.42904 * 109.48321 * 335.26735 * 5 4 3 21 21 C 1.33386 * 114.92491 * 0.42683 * 4 3 2 22 22 C 1.50697 * 125.20591 * 179.79393 * 21 4 3 23 23 S 1.75883 * 125.20454 * 180.30592 * 2 1 3 24 24 H 1.09002 * 109.47152 * 179.71913 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.72014 * 1 2 3 26 26 H 1.09004 * 109.47113 * 299.71995 * 1 2 3 27 27 H 1.08003 * 122.53814 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.52160 * 302.30898 * 7 5 4 29 29 H 1.09001 * 109.52295 * 62.43885 * 7 5 4 30 30 H 1.08996 * 109.54342 * 176.84704 * 8 7 5 31 31 H 1.09008 * 109.53964 * 297.11121 * 8 7 5 32 32 H 1.09002 * 109.51560 * 62.92706 * 9 8 7 33 33 H 1.09000 * 109.51976 * 183.11490 * 9 8 7 34 34 H 0.97003 * 120.00496 * 179.97438 * 15 14 12 35 35 H 1.09006 * 109.46908 * 179.97438 * 22 21 4 36 36 H 1.08994 * 109.47163 * 299.99855 * 22 21 4 37 37 H 1.09005 * 109.46921 * 60.00233 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6380 0.8429 0.0030 5 6 4.6623 1.9482 0.0079 6 1 5.5265 1.6456 -0.5834 7 6 5.1019 2.2305 1.4469 8 6 6.0973 3.3948 1.4495 9 6 5.4423 4.6135 0.7921 10 6 4.9896 4.2392 -0.6217 11 1 5.8580 3.9670 -1.2214 12 6 4.2912 5.4155 -1.2536 13 1 4.1814 6.3380 -0.7029 14 6 3.7924 5.3141 -2.5350 15 7 3.9266 4.1910 -3.2059 16 14 2.9273 6.7726 -3.3187 17 1 3.8624 7.9242 -3.3877 18 1 2.4882 6.4092 -4.6900 19 1 1.7442 7.1438 -2.5015 20 8 4.0902 3.1307 -0.5548 21 6 3.9751 -0.4477 -0.0036 22 6 5.3861 -0.9770 -0.0065 23 16 2.5210 -1.4371 -0.0077 24 1 -0.3633 -1.0277 -0.0050 25 1 -0.3633 0.5182 -0.8875 26 1 -0.3633 0.5095 0.8925 27 1 1.8669 2.0895 0.0004 28 1 4.2320 2.4938 2.0486 29 1 5.5776 1.3425 1.8633 30 1 6.3717 3.6377 2.4760 31 1 6.9890 3.1134 0.8891 32 1 4.5793 4.9248 1.3805 33 1 6.1625 5.4301 0.7397 34 1 3.5753 4.1195 -4.1073 35 1 5.3652 -2.0668 -0.0115 36 1 5.9065 -0.6191 -0.8948 37 1 5.9069 -0.6280 0.8852 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309443161.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:57 Heat of formation + Delta-G solvation = -36.816587 kcal Electronic energy + Delta-G solvation = -18576.346559 eV Core-core repulsion = 15830.392080 eV Total energy + Delta-G solvation = -2745.954479 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.95750 -36.95220 -33.23661 -32.54226 -32.33637 -30.00512 -28.96753 -25.94719 -24.53074 -23.34024 -22.05766 -20.66516 -19.33791 -17.81717 -16.70032 -16.47067 -14.90377 -14.48391 -14.42301 -14.27574 -14.08520 -13.52448 -13.21437 -13.03840 -12.79446 -12.64064 -12.57992 -12.10524 -11.81094 -11.56407 -11.20872 -11.02494 -10.92387 -10.82993 -10.63701 -10.49169 -10.35674 -10.23652 -9.83653 -9.55685 -8.86011 -8.50111 -8.03289 -7.97103 -7.67739 -5.99274 -4.11954 1.40725 2.00060 2.33164 3.23861 3.32954 3.37596 3.39825 4.42703 4.97955 5.15098 5.27158 5.42196 5.48034 5.53597 5.57836 5.61441 5.73612 5.75163 5.78025 5.97115 6.05583 6.12030 6.15028 6.22600 6.31254 6.36362 6.51400 6.64887 6.74403 6.82489 6.87661 6.92353 7.00048 7.12531 7.53372 7.90963 8.29939 8.79584 9.14963 9.58288 11.07862 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018381 B = 0.006862 C = 0.005619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.973944 B = 4079.702567 C = 4982.001972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.195 4.195 3 C -0.094 4.094 4 C -0.069 4.069 5 C 0.143 3.857 6 H 0.049 0.951 7 C -0.137 4.137 8 C -0.120 4.120 9 C -0.144 4.144 10 C 0.220 3.780 11 H 0.013 0.987 12 C -0.528 4.528 13 H 0.063 0.937 14 C 0.079 3.921 15 N -0.857 5.857 16 Si 0.890 3.110 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.275 1.275 20 O -0.348 6.348 21 C -0.188 4.188 22 C -0.076 4.076 23 S 0.054 5.946 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.147 0.853 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.261 0.739 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.686 -9.774 7.390 12.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.311 4.311 3 C -0.124 4.124 4 C -0.081 4.081 5 C 0.082 3.918 6 H 0.067 0.933 7 C -0.175 4.175 8 C -0.158 4.158 9 C -0.182 4.182 10 C 0.165 3.835 11 H 0.031 0.969 12 C -0.565 4.565 13 H 0.081 0.919 14 C -0.127 4.127 15 N -0.493 5.493 16 Si 0.717 3.283 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 O -0.267 6.267 21 C -0.304 4.304 22 C -0.135 4.135 23 S 0.318 5.682 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.165 0.835 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.213 -11.437 7.140 13.537 hybrid contribution 0.014 2.190 -0.417 2.229 sum -1.199 -9.247 6.723 11.495 Atomic orbital electron populations 1.20242 0.88312 1.01971 1.02819 1.24255 0.99384 0.95105 1.12345 1.19992 0.92386 0.99636 1.00379 1.18750 0.95026 0.93106 1.01225 1.20290 0.92325 0.86875 0.92350 0.93278 1.22103 0.99397 0.97897 0.98107 1.21623 0.97996 0.96384 0.99747 1.22265 0.99617 0.96165 1.00161 1.19689 0.90189 0.84762 0.88865 0.96938 1.20946 1.40567 0.96408 0.98555 0.91892 1.25061 0.95081 0.95505 0.97067 1.70029 1.43391 1.24795 1.11078 0.86716 0.80244 0.82928 0.78404 1.20125 1.21214 1.20090 1.88359 1.39254 1.18173 1.80913 1.23978 0.98389 0.95547 1.12526 1.20267 0.90258 1.00066 1.02875 1.83763 0.97327 1.10656 1.76466 0.92114 0.90762 0.90985 0.83537 0.91813 0.92647 0.93074 0.92664 0.92505 0.92478 0.92945 0.92033 0.90630 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.38 36.01 0.37 -0.59 16 2 C -0.19 -3.21 6.51 -36.00 -0.23 -3.44 16 3 C -0.09 -1.83 9.38 -41.21 -0.39 -2.21 16 4 C -0.07 -1.35 4.97 -106.25 -0.53 -1.87 16 5 C 0.14 2.98 2.61 -27.83 -0.07 2.91 16 6 H 0.05 1.05 7.52 -51.93 -0.39 0.66 16 7 C -0.14 -2.44 5.40 -26.59 -0.14 -2.59 16 8 C -0.12 -2.12 6.03 -26.55 -0.16 -2.28 16 9 C -0.14 -3.04 5.36 -26.59 -0.14 -3.19 16 10 C 0.22 5.67 2.50 -27.84 -0.07 5.60 16 11 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 12 C -0.53 -14.77 8.79 -34.44 -0.30 -15.07 16 13 H 0.06 1.71 7.74 -52.49 -0.41 1.30 16 14 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 15 N -0.86 -25.33 12.84 55.43 0.71 -24.62 16 16 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 O -0.35 -8.91 8.61 -35.23 -0.30 -9.21 16 21 C -0.19 -3.15 6.50 -36.01 -0.23 -3.38 16 22 C -0.08 -1.03 9.53 36.00 0.34 -0.69 16 23 S 0.05 0.82 23.31 -107.50 -2.51 -1.69 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.15 3.07 7.71 -52.48 -0.40 2.67 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.05 0.86 7.48 -51.93 -0.39 0.47 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 1.04 7.96 -51.93 -0.41 0.63 16 37 H 0.07 0.90 7.48 -51.93 -0.39 0.51 16 LS Contribution 314.59 15.07 4.74 4.74 Total: -1.00 -30.16 314.59 -9.79 -39.95 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -5.75 Total: -0.84 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -1.65 Total: -24.67 kcal Atomic # 7 Polarization: -25.33 SS G_CDS: 0.71 Total: -24.62 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.30 Total: -9.21 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.51 Total: -1.69 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.16 -9.79 -39.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309443161.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.132 kcal (2) G-P(sol) polarization free energy of solvation -30.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds