Wall clock time and date at job start Mon Mar 30 2020 06:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33391 * 125.20292 * 2 1 4 4 C 1.38419 * 114.91926 * 179.86277 * 3 2 1 5 5 C 1.50700 * 122.53686 * 180.20011 * 4 3 2 6 6 H 1.09003 * 109.48075 * 215.24098 * 5 4 3 7 7 C 1.53094 * 109.48081 * 95.22260 * 5 4 3 8 8 C 1.53181 * 109.16490 * 182.40996 * 7 5 4 9 9 C 1.53179 * 109.03857 * 56.97591 * 8 7 5 10 10 C 1.53092 * 109.16195 * 303.02202 * 9 8 7 11 11 H 1.08993 * 109.48237 * 297.61087 * 10 9 8 12 12 C 1.50695 * 109.47801 * 177.58932 * 10 9 8 13 13 H 1.08000 * 120.00185 * 0.02562 * 12 10 9 14 14 C 1.37876 * 119.99959 * 180.02562 * 12 10 9 15 15 N 1.31510 * 120.00282 * 359.97438 * 14 12 10 16 16 Si 1.86809 * 120.00028 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47325 * 59.99651 * 16 14 12 18 18 H 1.48501 * 109.46860 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46587 * 299.99640 * 16 14 12 20 20 O 1.42904 * 109.48321 * 335.26735 * 5 4 3 21 21 C 1.33386 * 114.92491 * 0.42683 * 4 3 2 22 22 C 1.50697 * 125.20591 * 179.79393 * 21 4 3 23 23 S 1.75883 * 125.20454 * 180.30592 * 2 1 3 24 24 H 1.09002 * 109.47152 * 179.71913 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.72014 * 1 2 3 26 26 H 1.09004 * 109.47113 * 299.71995 * 1 2 3 27 27 H 1.08003 * 122.53814 * 0.02562 * 3 2 1 28 28 H 1.09004 * 109.52160 * 302.30898 * 7 5 4 29 29 H 1.09001 * 109.52295 * 62.43885 * 7 5 4 30 30 H 1.08996 * 109.54342 * 176.84704 * 8 7 5 31 31 H 1.09008 * 109.53964 * 297.11121 * 8 7 5 32 32 H 1.09002 * 109.51560 * 62.92706 * 9 8 7 33 33 H 1.09000 * 109.51976 * 183.11490 * 9 8 7 34 34 H 0.97003 * 120.00496 * 179.97438 * 15 14 12 35 35 H 1.09006 * 109.46908 * 179.97438 * 22 21 4 36 36 H 1.08994 * 109.47163 * 299.99855 * 22 21 4 37 37 H 1.09005 * 109.46921 * 60.00233 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0900 0.0000 4 6 3.6380 0.8429 0.0030 5 6 4.6623 1.9482 0.0079 6 1 5.5265 1.6456 -0.5834 7 6 5.1019 2.2305 1.4469 8 6 6.0973 3.3948 1.4495 9 6 5.4423 4.6135 0.7921 10 6 4.9896 4.2392 -0.6217 11 1 5.8580 3.9670 -1.2214 12 6 4.2912 5.4155 -1.2536 13 1 4.1814 6.3380 -0.7029 14 6 3.7924 5.3141 -2.5350 15 7 3.9266 4.1910 -3.2059 16 14 2.9273 6.7726 -3.3187 17 1 3.8624 7.9242 -3.3877 18 1 2.4882 6.4092 -4.6900 19 1 1.7442 7.1438 -2.5015 20 8 4.0902 3.1307 -0.5548 21 6 3.9751 -0.4477 -0.0036 22 6 5.3861 -0.9770 -0.0065 23 16 2.5210 -1.4371 -0.0077 24 1 -0.3633 -1.0277 -0.0050 25 1 -0.3633 0.5182 -0.8875 26 1 -0.3633 0.5095 0.8925 27 1 1.8669 2.0895 0.0004 28 1 4.2320 2.4938 2.0486 29 1 5.5776 1.3425 1.8633 30 1 6.3717 3.6377 2.4760 31 1 6.9890 3.1134 0.8891 32 1 4.5793 4.9248 1.3805 33 1 6.1625 5.4301 0.7397 34 1 3.5753 4.1195 -4.1073 35 1 5.3652 -2.0668 -0.0115 36 1 5.9065 -0.6191 -0.8948 37 1 5.9069 -0.6280 0.8852 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309443161.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:57 Heat of formation + Delta-G solvation = -52.943504 kcal Electronic energy + Delta-G solvation = -18577.045875 eV Core-core repulsion = 15830.392080 eV Total energy + Delta-G solvation = -2746.653795 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.52199 -38.51259 -34.96506 -34.12924 -34.04649 -31.68509 -30.18354 -27.80895 -26.04725 -24.74952 -23.81473 -22.12997 -20.98905 -19.25384 -18.62631 -17.93556 -16.75655 -16.24496 -16.08696 -15.85762 -15.47490 -14.95339 -14.67509 -14.39874 -14.11851 -13.98120 -13.94879 -13.69348 -13.23936 -12.93945 -12.83793 -12.64694 -12.51037 -12.41367 -12.27790 -12.09321 -11.82762 -11.80730 -11.71381 -11.17964 -10.85898 -10.55215 -9.78999 -9.26120 -9.08426 -8.14170 -6.34806 0.07585 0.73641 1.00024 1.39284 1.42249 1.49669 1.80508 2.40016 3.03818 3.64475 3.88705 4.02753 4.12213 4.14274 4.19402 4.40685 4.43630 4.48837 4.50001 4.65048 4.71166 4.72173 4.85196 4.91602 4.97419 5.01681 5.10110 5.16204 5.17518 5.22834 5.28107 5.38317 5.49204 5.58677 5.72229 5.78205 6.22075 6.67795 7.23411 7.41756 8.92952 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.018381 B = 0.006862 C = 0.005619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.973944 B = 4079.702567 C = 4982.001972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.194 4.194 3 C -0.132 4.132 4 C -0.103 4.103 5 C 0.139 3.861 6 H 0.035 0.965 7 C -0.128 4.128 8 C -0.114 4.114 9 C -0.137 4.137 10 C 0.217 3.783 11 H -0.022 1.022 12 C -0.552 4.552 13 H 0.064 0.936 14 C 0.026 3.974 15 N -0.895 5.895 16 Si 0.958 3.042 17 H -0.263 1.263 18 H -0.283 1.283 19 H -0.271 1.271 20 O -0.378 6.378 21 C -0.191 4.191 22 C -0.078 4.078 23 S 0.118 5.882 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.115 0.885 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.260 0.740 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.879 -11.133 8.598 14.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.311 4.311 3 C -0.161 4.161 4 C -0.115 4.115 5 C 0.078 3.922 6 H 0.053 0.947 7 C -0.165 4.165 8 C -0.151 4.151 9 C -0.175 4.175 10 C 0.161 3.839 11 H -0.005 1.005 12 C -0.589 4.589 13 H 0.082 0.918 14 C -0.177 4.177 15 N -0.531 5.531 16 Si 0.783 3.217 17 H -0.188 1.188 18 H -0.208 1.208 19 H -0.196 1.196 20 O -0.298 6.298 21 C -0.308 4.308 22 C -0.136 4.136 23 S 0.382 5.618 24 H 0.104 0.896 25 H 0.091 0.909 26 H 0.103 0.897 27 H 0.133 0.867 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.397 -12.790 8.364 15.346 hybrid contribution 0.064 2.496 -0.786 2.618 sum -1.333 -10.294 7.578 12.852 Atomic orbital electron populations 1.20377 0.85992 1.03757 1.03358 1.24719 1.01224 0.95268 1.09874 1.19846 0.93145 0.99203 1.03926 1.18720 0.94727 0.93806 1.04220 1.20441 0.92345 0.85682 0.93682 0.94710 1.22028 0.99339 0.99263 0.95917 1.21609 0.97651 0.94535 1.01347 1.22118 0.99766 0.98143 0.97489 1.19552 0.88743 0.84592 0.90990 1.00451 1.21401 1.40655 0.97558 0.99307 0.91760 1.25920 0.95770 0.98320 0.97647 1.70179 1.44687 1.26991 1.11293 0.85632 0.79177 0.79603 0.77317 1.18777 1.20846 1.19608 1.88254 1.39829 1.19671 1.82019 1.24423 1.00771 0.95129 1.10498 1.20396 0.88318 1.01648 1.03247 1.83481 0.95173 1.08346 1.74801 0.89615 0.90925 0.89743 0.86744 0.92487 0.89503 0.89610 0.92136 0.93100 0.91792 0.93128 0.89437 0.91305 0.89465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.86 10.38 71.24 0.74 -1.12 16 2 C -0.19 -6.25 6.51 24.59 0.16 -6.09 16 3 C -0.13 -5.26 9.38 21.22 0.20 -5.07 16 4 C -0.10 -4.06 4.97 -20.92 -0.10 -4.17 16 5 C 0.14 5.98 2.61 29.88 0.08 6.05 16 6 H 0.04 1.56 7.52 -2.39 -0.02 1.54 16 7 C -0.13 -4.45 5.40 30.69 0.17 -4.29 16 8 C -0.11 -3.88 6.03 30.71 0.19 -3.70 16 9 C -0.14 -5.86 5.36 30.68 0.16 -5.70 16 10 C 0.22 11.66 2.50 29.88 0.07 11.74 16 11 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 12 C -0.55 -32.05 8.79 25.60 0.23 -31.82 16 13 H 0.06 3.59 7.74 -2.91 -0.02 3.56 16 14 C 0.03 1.52 5.40 84.66 0.46 1.98 16 15 N -0.89 -55.09 12.84 21.45 0.28 -54.81 16 16 Si 0.96 44.87 29.54 68.60 2.03 46.89 16 17 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 20 O -0.38 -20.38 8.61 -148.98 -1.28 -21.66 16 21 C -0.19 -6.17 6.50 24.59 0.16 -6.01 16 22 C -0.08 -1.94 9.53 71.23 0.68 -1.26 16 23 S 0.12 3.27 23.31 -56.49 -1.32 1.95 16 24 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.11 5.19 7.71 -2.91 -0.02 5.17 16 28 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.09 2.47 7.48 -2.39 -0.02 2.45 16 30 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 35 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.07 1.83 7.96 -2.39 -0.02 1.81 16 37 H 0.09 1.92 7.48 -2.38 -0.02 1.90 16 Total: -1.00 -68.31 314.59 3.92 -64.39 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 1.04 Total: 12.69 kcal Atomic # 6 Polarization: -52.64 SS G_CDS: 3.18 Total: -49.45 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.28 Total: -54.81 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -1.28 Total: -21.66 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.32 Total: 1.95 kcal Total: -68.31 3.92 -64.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309443161.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.442 kcal (2) G-P(sol) polarization free energy of solvation -68.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds