Wall clock time and date at job start Mon Mar 30 2020 06:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33386 * 125.20234 * 2 1 4 4 C 1.38429 * 114.91786 * 179.97438 * 3 2 1 5 5 C 1.50701 * 122.53530 * 179.97438 * 4 3 2 6 6 H 1.08998 * 110.34954 * 142.88044 * 5 4 3 7 7 C 1.54952 * 110.30633 * 265.02206 * 5 4 3 8 8 C 1.55308 * 100.93825 * 155.36443 * 7 5 4 9 9 C 1.54388 * 102.43740 * 325.76522 * 8 7 5 10 10 C 1.52994 * 109.82990 * 140.97207 * 9 8 7 11 11 C 1.50704 * 109.82842 * 261.94617 * 9 8 7 12 12 H 1.07994 * 119.99822 * 0.02562 * 11 9 8 13 13 C 1.37872 * 119.99531 * 180.02562 * 11 9 8 14 14 N 1.31514 * 120.00271 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 119.99718 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47457 * 59.99692 * 15 13 11 17 17 H 1.48502 * 109.47035 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46791 * 299.99259 * 15 13 11 19 19 O 1.43640 * 110.31225 * 20.73782 * 5 4 3 20 20 C 1.33382 * 114.92060 * 0.25248 * 4 3 2 21 21 C 1.50707 * 125.20143 * 179.75525 * 20 4 3 22 22 S 1.75877 * 125.20143 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.47971 * 89.98932 * 1 2 3 24 24 H 1.09000 * 109.47292 * 209.99471 * 1 2 3 25 25 H 1.09001 * 109.47233 * 329.99464 * 1 2 3 26 26 H 1.08002 * 122.54307 * 359.95316 * 3 2 1 27 27 H 1.09000 * 111.12405 * 37.44436 * 7 5 4 28 28 H 1.08998 * 111.15965 * 273.29362 * 7 5 4 29 29 H 1.09002 * 110.84945 * 84.05895 * 8 7 5 30 30 H 1.09001 * 110.84573 * 207.47820 * 8 7 5 31 31 H 1.09011 * 109.47343 * 59.99948 * 10 9 8 32 32 H 1.08996 * 109.47368 * 179.97438 * 10 9 8 33 33 H 1.09001 * 109.47534 * 300.00312 * 10 9 8 34 34 H 0.97004 * 119.99966 * 179.97438 * 14 13 11 35 35 H 1.08999 * 109.46829 * 89.99874 * 21 20 4 36 36 H 1.08996 * 109.46857 * 210.00055 * 21 20 4 37 37 H 1.09002 * 109.47047 * 330.00011 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8428 0.0006 5 6 4.6623 1.9482 0.0001 6 1 5.5174 1.6727 0.6172 7 6 5.1207 2.2559 -1.4477 8 6 5.5962 3.7270 -1.2999 9 6 4.6153 4.2894 -0.2487 10 6 5.3591 5.2236 0.7078 11 6 3.5034 5.0390 -0.9365 12 1 3.4877 5.1127 -2.0138 13 6 2.5064 5.6306 -0.1903 14 7 2.5253 5.5403 1.1216 15 14 1.1277 6.5590 -1.0429 16 1 0.3979 5.6379 -1.9506 17 1 0.1895 7.0965 -0.0249 18 1 1.6995 7.6805 -1.8306 19 8 4.0770 3.1705 0.4761 20 6 3.9750 -0.4477 -0.0043 21 6 5.3860 -0.9771 -0.0101 22 16 2.5208 -1.4371 0.0006 23 1 -0.3635 0.0002 -1.0276 24 1 -0.3634 -0.8900 0.5137 25 1 -0.3634 0.8899 0.5139 26 1 1.8669 2.0895 -0.0007 27 1 4.2885 2.1804 -2.1477 28 1 5.9427 1.6055 -1.7468 29 1 6.6222 3.7681 -0.9343 30 1 5.5011 4.2622 -2.2447 31 1 5.7952 6.0486 0.1442 32 1 4.6615 5.6175 1.4468 33 1 6.1508 4.6706 1.2134 34 1 1.8240 5.9569 1.6466 35 1 5.7292 -1.1078 1.0162 36 1 5.4120 -1.9364 -0.5269 37 1 6.0373 -0.2699 -0.5238 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309497710.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:02 Heat of formation + Delta-G solvation = -25.617189 kcal Electronic energy + Delta-G solvation = -18788.721348 eV Core-core repulsion = 16043.252511 eV Total energy + Delta-G solvation = -2745.468837 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.02113 -37.03207 -33.23075 -32.52351 -30.93069 -29.76412 -28.94601 -25.64952 -25.06322 -23.69649 -21.81292 -20.33287 -19.43038 -17.67492 -16.94569 -16.39855 -14.98316 -14.79671 -14.29071 -13.95085 -13.53630 -13.10392 -13.05149 -12.89584 -12.71393 -12.42319 -12.36045 -11.81696 -11.53526 -11.25967 -11.24431 -11.13329 -10.85428 -10.67263 -10.55176 -10.43842 -10.36696 -10.20439 -9.87236 -9.50324 -9.10847 -8.46782 -7.99985 -7.94434 -7.68382 -5.92762 -4.09104 1.42121 2.01921 2.37033 3.26688 3.31615 3.36671 3.39081 4.43081 5.00343 5.18809 5.28206 5.44074 5.53146 5.54104 5.60191 5.70582 5.74396 5.76877 5.82065 6.03098 6.11478 6.18757 6.33209 6.37268 6.46858 6.60360 6.75119 6.82753 6.83388 6.94465 6.99866 7.12487 7.20597 7.41706 7.79798 8.12663 8.39907 8.64762 9.06196 9.61500 11.08530 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019278 B = 0.007643 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.089923 B = 3662.754683 C = 4675.394946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.194 4.194 3 C -0.093 4.093 4 C -0.075 4.075 5 C 0.133 3.867 6 H 0.055 0.945 7 C -0.136 4.136 8 C -0.143 4.143 9 C 0.229 3.771 10 C -0.140 4.140 11 C -0.529 4.529 12 H 0.057 0.943 13 C 0.082 3.918 14 N -0.859 5.859 15 Si 0.884 3.116 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 O -0.345 6.345 20 C -0.192 4.192 21 C -0.077 4.077 22 S 0.046 5.954 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.155 0.845 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.036 0.964 32 H 0.091 0.909 33 H 0.011 0.989 34 H 0.259 0.741 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.964 -11.114 -2.195 11.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.310 4.310 3 C -0.122 4.122 4 C -0.087 4.087 5 C 0.072 3.928 6 H 0.073 0.927 7 C -0.174 4.174 8 C -0.181 4.181 9 C 0.192 3.808 10 C -0.198 4.198 11 C -0.567 4.567 12 H 0.075 0.925 13 C -0.123 4.123 14 N -0.496 5.496 15 Si 0.711 3.289 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.203 1.203 19 O -0.265 6.265 20 C -0.308 4.308 21 C -0.135 4.135 22 S 0.310 5.690 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.172 0.828 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.109 0.891 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.411 -12.603 -1.849 12.816 hybrid contribution -0.408 1.963 -0.618 2.098 sum 1.003 -10.640 -2.467 10.968 Atomic orbital electron populations 1.20255 0.88331 1.02660 1.02219 1.24260 0.99397 0.94942 1.12374 1.20177 0.92346 1.00072 0.99600 1.18995 0.95361 0.93262 1.01121 1.21204 0.91469 0.86513 0.93657 0.92697 1.23097 1.00223 0.96886 0.97151 1.23224 0.98754 0.94759 1.01340 1.19738 0.90258 0.83924 0.86878 1.21990 0.98343 0.98438 1.01029 1.21172 1.09463 1.33456 0.92622 0.92489 1.24972 0.97448 0.95169 0.94706 1.69946 1.32781 1.42491 1.04352 0.86818 0.82349 0.80292 0.79427 1.20228 1.21241 1.20257 1.88863 1.65255 1.11855 1.60517 1.23968 0.98313 0.95563 1.12951 1.20268 0.90310 1.00680 1.02269 1.83734 0.97499 1.10867 1.76889 0.91298 0.92006 0.90514 0.82790 0.90950 0.92276 0.93040 0.91296 0.94530 0.89079 0.96989 0.93053 0.91222 0.91883 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.38 36.00 0.37 -0.68 16 2 C -0.19 -3.31 6.51 -36.00 -0.23 -3.54 16 3 C -0.09 -1.87 9.39 -41.21 -0.39 -2.26 16 4 C -0.08 -1.46 5.01 -106.25 -0.53 -2.00 16 5 C 0.13 2.73 3.05 -26.85 -0.08 2.65 16 6 H 0.06 1.07 7.69 -51.93 -0.40 0.68 16 7 C -0.14 -2.57 6.44 -24.48 -0.16 -2.73 16 8 C -0.14 -2.95 6.06 -24.78 -0.15 -3.10 16 9 C 0.23 5.66 0.83 -91.05 -0.08 5.58 16 10 C -0.14 -3.41 8.53 37.15 0.32 -3.09 16 11 C -0.53 -14.30 8.23 -34.44 -0.28 -14.58 16 12 H 0.06 1.52 7.49 -52.49 -0.39 1.13 16 13 C 0.08 2.24 5.26 -17.82 -0.09 2.15 16 14 N -0.86 -24.30 10.93 55.43 0.61 -23.70 16 15 Si 0.88 20.98 29.54 -169.99 -5.02 15.96 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 O -0.35 -8.74 9.07 -35.23 -0.32 -9.06 16 20 C -0.19 -3.16 6.50 -36.00 -0.23 -3.40 16 21 C -0.08 -0.99 9.83 36.01 0.35 -0.64 16 22 S 0.05 0.71 23.31 -107.50 -2.51 -1.80 16 23 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 26 H 0.15 3.57 7.66 -52.49 -0.40 3.16 16 27 H 0.07 1.45 8.05 -51.93 -0.42 1.03 16 28 H 0.06 0.93 7.58 -51.93 -0.39 0.54 16 29 H 0.05 0.96 7.85 -51.93 -0.41 0.56 16 30 H 0.07 1.40 7.61 -51.93 -0.40 1.00 16 31 H 0.04 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.09 2.46 6.01 -51.93 -0.31 2.14 16 33 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.95 6.80 -51.93 -0.35 0.60 16 LS Contribution 312.24 15.07 4.71 4.71 Total: -1.00 -28.95 312.24 -9.29 -38.24 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -5.57 Total: 1.28 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: -1.19 Total: -25.63 kcal Atomic # 7 Polarization: -24.30 SS G_CDS: 0.61 Total: -23.70 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.32 Total: -9.06 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -2.51 Total: -1.80 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.95 -9.29 -38.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309497710.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.619 kcal (2) G-P(sol) polarization free energy of solvation -28.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds