Wall clock time and date at job start Mon Mar 30 2020 06:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33386 * 125.20234 * 2 1 4 4 C 1.38429 * 114.91786 * 179.97438 * 3 2 1 5 5 C 1.50701 * 122.53530 * 179.97438 * 4 3 2 6 6 H 1.08998 * 110.34954 * 142.88044 * 5 4 3 7 7 C 1.54952 * 110.30633 * 265.02206 * 5 4 3 8 8 C 1.55308 * 100.93825 * 155.36443 * 7 5 4 9 9 C 1.54388 * 102.43740 * 325.76522 * 8 7 5 10 10 C 1.52994 * 109.82990 * 140.97207 * 9 8 7 11 11 C 1.50704 * 109.82842 * 261.94617 * 9 8 7 12 12 H 1.07994 * 119.99822 * 0.02562 * 11 9 8 13 13 C 1.37872 * 119.99531 * 180.02562 * 11 9 8 14 14 N 1.31514 * 120.00271 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 119.99718 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47457 * 59.99692 * 15 13 11 17 17 H 1.48502 * 109.47035 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46791 * 299.99259 * 15 13 11 19 19 O 1.43640 * 110.31225 * 20.73782 * 5 4 3 20 20 C 1.33382 * 114.92060 * 0.25248 * 4 3 2 21 21 C 1.50707 * 125.20143 * 179.75525 * 20 4 3 22 22 S 1.75877 * 125.20143 * 179.97438 * 2 1 3 23 23 H 1.09001 * 109.47971 * 89.98932 * 1 2 3 24 24 H 1.09000 * 109.47292 * 209.99471 * 1 2 3 25 25 H 1.09001 * 109.47233 * 329.99464 * 1 2 3 26 26 H 1.08002 * 122.54307 * 359.95316 * 3 2 1 27 27 H 1.09000 * 111.12405 * 37.44436 * 7 5 4 28 28 H 1.08998 * 111.15965 * 273.29362 * 7 5 4 29 29 H 1.09002 * 110.84945 * 84.05895 * 8 7 5 30 30 H 1.09001 * 110.84573 * 207.47820 * 8 7 5 31 31 H 1.09011 * 109.47343 * 59.99948 * 10 9 8 32 32 H 1.08996 * 109.47368 * 179.97438 * 10 9 8 33 33 H 1.09001 * 109.47534 * 300.00312 * 10 9 8 34 34 H 0.97004 * 119.99966 * 179.97438 * 14 13 11 35 35 H 1.08999 * 109.46829 * 89.99874 * 21 20 4 36 36 H 1.08996 * 109.46857 * 210.00055 * 21 20 4 37 37 H 1.09002 * 109.47047 * 330.00011 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8428 0.0006 5 6 4.6623 1.9482 0.0001 6 1 5.5174 1.6727 0.6172 7 6 5.1207 2.2559 -1.4477 8 6 5.5962 3.7270 -1.2999 9 6 4.6153 4.2894 -0.2487 10 6 5.3591 5.2236 0.7078 11 6 3.5034 5.0390 -0.9365 12 1 3.4877 5.1127 -2.0138 13 6 2.5064 5.6306 -0.1903 14 7 2.5253 5.5403 1.1216 15 14 1.1277 6.5590 -1.0429 16 1 0.3979 5.6379 -1.9506 17 1 0.1895 7.0965 -0.0249 18 1 1.6995 7.6805 -1.8306 19 8 4.0770 3.1705 0.4761 20 6 3.9750 -0.4477 -0.0043 21 6 5.3860 -0.9771 -0.0101 22 16 2.5208 -1.4371 0.0006 23 1 -0.3635 0.0002 -1.0276 24 1 -0.3634 -0.8900 0.5137 25 1 -0.3634 0.8899 0.5139 26 1 1.8669 2.0895 -0.0007 27 1 4.2885 2.1804 -2.1477 28 1 5.9427 1.6055 -1.7468 29 1 6.6222 3.7681 -0.9343 30 1 5.5011 4.2622 -2.2447 31 1 5.7952 6.0486 0.1442 32 1 4.6615 5.6175 1.4468 33 1 6.1508 4.6706 1.2134 34 1 1.8240 5.9569 1.6466 35 1 5.7292 -1.1078 1.0162 36 1 5.4120 -1.9364 -0.5269 37 1 6.0373 -0.2699 -0.5238 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309497710.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:02 Heat of formation + Delta-G solvation = -40.628942 kcal Electronic energy + Delta-G solvation = -18789.372307 eV Core-core repulsion = 16043.252511 eV Total energy + Delta-G solvation = -2746.119795 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.60066 -38.57179 -34.97149 -34.03848 -32.68550 -31.42967 -30.18557 -27.40579 -26.93164 -25.03927 -23.29829 -21.81715 -21.28039 -19.07960 -18.76288 -17.84651 -16.69293 -16.54642 -15.95880 -15.37879 -15.09304 -14.71362 -14.29116 -14.21187 -14.09732 -13.91549 -13.69605 -13.41836 -13.18892 -12.96236 -12.78876 -12.58370 -12.52553 -12.43129 -12.21089 -12.02200 -11.97675 -11.86964 -11.54469 -11.19533 -10.93629 -10.54602 -9.78188 -9.24562 -9.05933 -7.99579 -6.22050 0.08881 0.75015 1.03080 1.39472 1.40358 1.47337 1.82051 2.43174 3.13750 3.65261 3.89081 3.99931 4.07562 4.23634 4.26697 4.41760 4.49798 4.60078 4.68566 4.76845 4.78548 4.81438 4.92990 4.99133 5.03774 5.04868 5.10785 5.18473 5.26551 5.31527 5.39780 5.45767 5.57398 5.67772 5.82200 6.14160 6.38415 6.69743 7.16703 7.52940 9.00154 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019278 B = 0.007643 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.089923 B = 3662.754683 C = 4675.394946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.199 4.199 3 C -0.129 4.129 4 C -0.110 4.110 5 C 0.128 3.872 6 H 0.067 0.933 7 C -0.123 4.123 8 C -0.138 4.138 9 C 0.214 3.786 10 C -0.134 4.134 11 C -0.545 4.545 12 H 0.051 0.949 13 C 0.037 3.963 14 N -0.887 5.887 15 Si 0.940 3.060 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.268 1.268 19 O -0.380 6.380 20 C -0.186 4.186 21 C -0.079 4.079 22 S 0.114 5.886 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.066 0.934 26 H 0.107 0.893 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.028 0.972 34 H 0.256 0.744 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.725 -13.521 -3.070 14.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.315 4.315 3 C -0.159 4.159 4 C -0.122 4.122 5 C 0.068 3.932 6 H 0.084 0.916 7 C -0.161 4.161 8 C -0.176 4.176 9 C 0.177 3.823 10 C -0.192 4.192 11 C -0.583 4.583 12 H 0.069 0.931 13 C -0.166 4.166 14 N -0.524 5.524 15 Si 0.766 3.234 16 H -0.202 1.202 17 H -0.210 1.210 18 H -0.193 1.193 19 O -0.300 6.300 20 C -0.303 4.303 21 C -0.138 4.138 22 S 0.378 5.622 23 H 0.101 0.899 24 H 0.106 0.894 25 H 0.085 0.915 26 H 0.125 0.875 27 H 0.072 0.928 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.179 -15.010 -2.736 15.412 hybrid contribution -0.645 2.595 -0.326 2.694 sum 1.534 -12.415 -3.062 12.878 Atomic orbital electron populations 1.20369 0.86482 1.03447 1.03342 1.24666 1.01076 0.95514 1.10274 1.19926 0.93640 0.98914 1.03413 1.18916 0.94677 0.94246 1.04315 1.21388 0.92083 0.85297 0.94480 0.91588 1.23026 1.00726 0.96434 0.95913 1.23140 0.98889 0.95585 0.99975 1.19826 0.90488 0.84173 0.87844 1.21883 0.98034 0.98812 1.00473 1.21532 1.10499 1.33764 0.92506 0.93105 1.25643 0.99559 0.96124 0.95242 1.70097 1.33334 1.43519 1.05496 0.85920 0.79805 0.79225 0.78457 1.20237 1.21038 1.19323 1.88792 1.66390 1.13603 1.61214 1.24454 1.00758 0.94867 1.10220 1.20443 0.87914 1.01855 1.03577 1.83451 0.95421 1.08147 1.75171 0.89916 0.89437 0.91518 0.87481 0.92782 0.88329 0.90797 0.91452 0.93896 0.92285 0.95295 0.93459 0.89902 0.89397 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.09 10.38 71.24 0.74 -1.35 16 2 C -0.20 -6.68 6.51 24.59 0.16 -6.52 16 3 C -0.13 -5.40 9.39 21.22 0.20 -5.20 16 4 C -0.11 -4.25 5.01 -20.92 -0.10 -4.35 16 5 C 0.13 5.24 3.05 30.52 0.09 5.34 16 6 H 0.07 2.50 7.69 -2.39 -0.02 2.48 16 7 C -0.12 -4.52 6.44 32.05 0.21 -4.31 16 8 C -0.14 -5.58 6.06 31.86 0.19 -5.39 16 9 C 0.21 10.77 0.83 -11.07 -0.01 10.76 16 10 C -0.13 -6.63 8.53 71.98 0.61 -6.02 16 11 C -0.55 -30.36 8.23 25.60 0.21 -30.15 16 12 H 0.05 2.79 7.49 -2.91 -0.02 2.77 16 13 C 0.04 2.06 5.26 84.65 0.45 2.50 16 14 N -0.89 -52.36 10.93 21.45 0.23 -52.13 16 15 Si 0.94 44.34 29.54 68.60 2.03 46.37 16 16 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 17 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 O -0.38 -19.85 9.07 -148.98 -1.35 -21.20 16 20 C -0.19 -5.71 6.50 24.59 0.16 -5.55 16 21 C -0.08 -1.76 9.83 71.24 0.70 -1.05 16 22 S 0.11 3.14 23.31 -56.49 -1.32 1.82 16 23 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.11 5.41 7.66 -2.91 -0.02 5.39 16 27 H 0.05 2.16 8.05 -2.39 -0.02 2.14 16 28 H 0.10 2.80 7.58 -2.39 -0.02 2.78 16 29 H 0.07 2.62 7.85 -2.39 -0.02 2.60 16 30 H 0.07 2.70 7.61 -2.39 -0.02 2.68 16 31 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.06 3.29 6.01 -2.39 -0.01 3.28 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.25 16 34 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 1.72 6.80 -2.39 -0.02 1.71 16 Total: -1.00 -65.20 312.24 4.25 -60.95 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 1.05 Total: 15.48 kcal Atomic # 6 Polarization: -54.90 SS G_CDS: 3.61 Total: -51.29 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.23 Total: -52.13 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -1.35 Total: -21.20 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -1.32 Total: 1.82 kcal Total: -65.20 4.25 -60.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309497710.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.324 kcal (2) G-P(sol) polarization free energy of solvation -65.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds