Wall clock time and date at job start Mon Mar 30 2020 06:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33386 * 125.20733 * 2 1 4 4 C 1.38421 * 114.92502 * 180.20671 * 3 2 1 5 5 C 1.50698 * 122.54087 * 179.76603 * 4 3 2 6 6 H 1.09007 * 110.54740 * 217.59132 * 5 4 3 7 7 C 1.54994 * 110.62327 * 94.70737 * 5 4 3 8 8 C 1.54806 * 102.09486 * 204.31596 * 7 5 4 9 9 C 1.54103 * 104.18845 * 20.88159 * 8 7 5 10 10 C 1.52999 * 109.88145 * 242.45742 * 9 8 7 11 11 C 1.50694 * 109.88042 * 121.45170 * 9 8 7 12 12 H 1.08002 * 120.00179 * 0.30610 * 11 9 8 13 13 C 1.37879 * 120.00472 * 180.30928 * 11 9 8 14 14 N 1.31514 * 119.99350 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 120.00608 * 179.97438 * 13 11 9 16 16 H 1.48490 * 109.47339 * 179.97438 * 15 13 11 17 17 H 1.48493 * 109.47239 * 300.00306 * 15 13 11 18 18 H 1.48504 * 109.46636 * 59.99865 * 15 13 11 19 19 O 1.43745 * 107.41881 * 1.95298 * 9 8 7 20 20 C 1.33388 * 114.91868 * 359.49098 * 4 3 2 21 21 C 1.50698 * 125.20408 * 180.25076 * 20 4 3 22 22 S 1.75885 * 109.59456 * 0.27230 * 20 4 3 23 23 H 1.09003 * 109.46902 * 180.28464 * 1 2 3 24 24 H 1.08993 * 109.47019 * 300.28692 * 1 2 3 25 25 H 1.08996 * 109.46875 * 60.29080 * 1 2 3 26 26 H 1.08005 * 122.53668 * 359.97399 * 3 2 1 27 27 H 1.09001 * 110.90635 * 86.12047 * 7 5 4 28 28 H 1.08998 * 110.93767 * 322.53237 * 7 5 4 29 29 H 1.08998 * 110.49055 * 262.20727 * 8 7 5 30 30 H 1.08994 * 110.59935 * 139.61220 * 8 7 5 31 31 H 1.08998 * 109.46670 * 299.69058 * 10 9 8 32 32 H 1.08996 * 109.47020 * 59.69099 * 10 9 8 33 33 H 1.08999 * 109.47131 * 179.69049 * 10 9 8 34 34 H 0.97005 * 119.99661 * 179.97438 * 14 13 11 35 35 H 1.08994 * 109.47577 * 89.99971 * 21 20 4 36 36 H 1.09002 * 109.47076 * 210.00643 * 21 20 4 37 37 H 1.09001 * 109.46688 * 330.00086 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 -0.0045 5 6 4.6623 1.9481 -0.0104 6 1 5.5133 1.6777 -0.6357 7 6 5.1261 2.2704 1.4330 8 6 5.6142 3.7332 1.2978 9 6 4.9113 4.2501 0.0275 10 6 5.9536 4.6223 -1.0289 11 6 4.0686 5.4538 0.3619 12 1 4.0349 5.8247 1.3757 13 6 3.3404 6.0817 -0.6262 14 7 3.3817 5.6303 -1.8608 15 14 2.2951 7.5733 -0.2116 16 1 1.6171 8.0596 -1.4400 17 1 1.2761 7.1976 0.8011 18 1 3.1618 8.6488 0.3336 19 8 4.0751 3.1891 -0.4635 20 6 3.9751 -0.4478 0.0025 21 6 5.3860 -0.9772 0.0051 22 16 2.5210 -1.4372 0.0078 23 1 -0.3633 -1.0277 0.0051 24 1 -0.3633 0.5183 0.8873 25 1 -0.3633 0.5093 -0.8926 26 1 1.8670 2.0894 -0.0004 27 1 5.9425 1.6143 1.7349 28 1 4.2943 2.2010 2.1339 29 1 6.6967 3.7644 1.1743 30 1 5.3131 4.3197 2.1658 31 1 6.6028 5.4059 -0.6384 32 1 6.5510 3.7445 -1.2749 33 1 5.4494 4.9816 -1.9260 34 1 2.8691 6.0718 -2.5560 35 1 5.7266 -1.0991 1.0332 36 1 5.4134 -1.9409 -0.5035 37 1 6.0386 -0.2743 -0.5129 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309497713.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:05 Heat of formation + Delta-G solvation = -25.371386 kcal Electronic energy + Delta-G solvation = -18653.788455 eV Core-core repulsion = 15908.330277 eV Total energy + Delta-G solvation = -2745.458178 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.05763 -37.12979 -33.24312 -32.55804 -30.91711 -29.72238 -28.94305 -25.84226 -25.06469 -23.75907 -21.89878 -20.32225 -19.37105 -17.74318 -16.87750 -16.46151 -15.02296 -14.81040 -14.27625 -13.95337 -13.46322 -13.30191 -13.14109 -12.95497 -12.74242 -12.59477 -12.31984 -11.97868 -11.59987 -11.37739 -11.19895 -11.10237 -10.86376 -10.64444 -10.61928 -10.49532 -10.36960 -10.11779 -9.79129 -9.50826 -9.06640 -8.49487 -8.06884 -8.01173 -7.78601 -5.94432 -4.10247 1.35514 1.95250 2.29415 3.18244 3.32328 3.37256 3.39535 4.42974 4.99036 5.11022 5.24399 5.41859 5.45752 5.53898 5.64868 5.65506 5.71187 5.72671 5.83084 6.02641 6.04312 6.16436 6.28514 6.37487 6.40342 6.61272 6.72249 6.73912 6.83506 6.91523 6.92382 7.03977 7.21230 7.32754 7.79224 8.13752 8.37033 8.59174 9.02953 9.59843 11.07699 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021594 B = 0.006634 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.365954 B = 4219.436552 C = 5073.453617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.192 4.192 3 C -0.098 4.098 4 C -0.072 4.072 5 C 0.122 3.878 6 H 0.059 0.941 7 C -0.137 4.137 8 C -0.141 4.141 9 C 0.226 3.774 10 C -0.149 4.149 11 C -0.523 4.523 12 H 0.060 0.940 13 C 0.080 3.920 14 N -0.859 5.859 15 Si 0.888 3.112 16 H -0.287 1.287 17 H -0.276 1.276 18 H -0.277 1.277 19 O -0.335 6.335 20 C -0.190 4.190 21 C -0.077 4.077 22 S 0.053 5.947 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.151 0.849 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.034 0.966 32 H 0.009 0.991 33 H 0.090 0.910 34 H 0.260 0.740 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.258 -11.921 3.595 12.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.308 4.308 3 C -0.128 4.128 4 C -0.084 4.084 5 C 0.061 3.939 6 H 0.076 0.924 7 C -0.175 4.175 8 C -0.179 4.179 9 C 0.188 3.812 10 C -0.207 4.207 11 C -0.560 4.560 12 H 0.078 0.922 13 C -0.125 4.125 14 N -0.496 5.496 15 Si 0.715 3.285 16 H -0.212 1.212 17 H -0.202 1.202 18 H -0.202 1.202 19 O -0.254 6.254 20 C -0.306 4.306 21 C -0.136 4.136 22 S 0.317 5.683 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.168 0.832 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.028 0.972 33 H 0.109 0.891 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.303 -13.430 3.276 13.827 hybrid contribution -0.131 2.261 0.273 2.281 sum -0.433 -11.169 3.549 11.727 Atomic orbital electron populations 1.20251 0.88239 1.01981 1.02946 1.24280 0.99437 0.95032 1.12052 1.20074 0.92355 0.99920 1.00447 1.18787 0.95061 0.93145 1.01369 1.21461 0.91892 0.86835 0.93713 0.92389 1.23003 1.00099 0.97205 0.97213 1.23078 0.99158 0.94436 1.01253 1.19644 0.88183 0.86078 0.87301 1.22169 0.97543 0.97546 1.03401 1.21031 1.29580 1.10497 0.94933 0.92173 1.25017 0.95904 0.96593 0.95004 1.69952 1.39698 1.39384 1.00527 0.86747 0.80770 0.83152 0.77801 1.21233 1.20198 1.20209 1.89335 1.49530 1.11380 1.75193 1.23976 0.98438 0.95541 1.12657 1.20277 0.90265 1.00778 1.02256 1.83782 0.97330 1.10670 1.76540 0.92088 0.90857 0.90737 0.83163 0.92305 0.91497 0.92918 0.91566 0.94645 0.97199 0.89150 0.93010 0.91163 0.91862 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.38 36.01 0.37 -0.59 16 2 C -0.19 -3.10 6.51 -36.00 -0.23 -3.34 16 3 C -0.10 -1.89 9.41 -41.21 -0.39 -2.28 16 4 C -0.07 -1.36 5.04 -106.25 -0.54 -1.89 16 5 C 0.12 2.51 3.19 -26.83 -0.09 2.42 16 6 H 0.06 1.16 6.97 -51.93 -0.36 0.80 16 7 C -0.14 -2.58 6.57 -24.73 -0.16 -2.74 16 8 C -0.14 -2.96 6.26 -25.20 -0.16 -3.11 16 9 C 0.23 5.63 0.74 -91.20 -0.07 5.56 16 10 C -0.15 -3.63 8.39 37.16 0.31 -3.32 16 11 C -0.52 -14.32 8.26 -34.44 -0.28 -14.61 16 12 H 0.06 1.62 7.33 -52.49 -0.38 1.23 16 13 C 0.08 2.21 5.26 -17.82 -0.09 2.12 16 14 N -0.86 -24.59 10.93 55.43 0.61 -23.99 16 15 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 O -0.34 -8.55 9.24 -35.23 -0.33 -8.88 16 20 C -0.19 -3.06 6.50 -36.00 -0.23 -3.29 16 21 C -0.08 -0.99 10.05 36.00 0.36 -0.63 16 22 S 0.05 0.77 23.31 -107.50 -2.51 -1.73 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.15 3.22 7.66 -52.48 -0.40 2.81 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 1.28 8.05 -51.93 -0.42 0.86 16 29 H 0.05 1.00 7.70 -51.93 -0.40 0.60 16 30 H 0.07 1.38 7.40 -51.93 -0.38 1.00 16 31 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.09 2.45 6.03 -51.93 -0.31 2.14 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.99 6.83 -51.93 -0.35 0.64 16 LS Contribution 312.30 15.07 4.71 4.71 Total: -1.00 -29.39 312.30 -9.27 -38.66 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.54 Total: 0.82 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: -1.20 Total: -25.70 kcal Atomic # 7 Polarization: -24.59 SS G_CDS: 0.61 Total: -23.99 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.33 Total: -8.88 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.51 Total: -1.73 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.39 -9.27 -38.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309497713.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.290 kcal (2) G-P(sol) polarization free energy of solvation -29.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds